RchiOBHm_Chr2g0127561

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
42414749 .. 42420070
5322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49941

Sequence Viewer

Length: 1623 bp
ATGTTCAAGTCGAAGCTGCAGGAGCTGTGCCAGAAGAAGGCGTGGCCGTTACCGGAGTACAGCAGCAACAAGGAGGGCCTCGACCACGACCCTCGTTTCTCAGCCACCGTCAAAATCAACGGCCGTGAATTCAACACTGTCGACCCCTTCAGATCCTCCAAGTTGGCCCAAAACGACGCCGCTAGGCTCGCCTTCGATCACTTCTCTGCCCCCGCTACCCGCCCCATTCCTTTCGATTTCCCTCAGCCGAGTCTTGTCGCTATCGCTCCCGCTCCCACTCCCACTCCCTCAGGACTTCCCACAGGACTGGGCACTGATTGGAGTTTTACAAACACACCACTGCAATTGCAAAAGACTCAAGAAACACATCAACCTCCTCAGGTCAGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGGTAATGCAACAAATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGCAACAGGTTCCAGTTCTCAGATCAGTGGCAGAGCATTAGGTGTTGAAGGTGATAATAGATCTAAAGGTATACAACATTTGCATAAGAACCAGCTGCAGCGTTATGCTCACAAGAGGAATCTCATTTTACCTGTCTACTCTTGTGAGCGGGAAGGTCCTCCTCATGCCGCTCGTTTCAAATGTACAGTAACAATCGATGGAAAAACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCAGAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTCCAAGAAGATGATTCCGGTTTGTACAAGAACCTTTTACAAGAACTAATTCAAAAAGAAGGTCAACATGTACCACTCTATAGCACAAGGACATCCGGTGAACCTCACATGCTTACTTTTGTTTCAACCGTGGAGATTGGAGGAGAATCTTTTACCGGTCAAGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGCTGCCTATAATACTTTGAGAGATCGTAAGTCAAGTCCGATCCCGTTGTTTCTGACCCAGGCTTCACAAGGGCAAGAAGGATTGCAGTTCTTATCTTCGAATGCTCCATCATACATGGCTCCTGATCTACAACAACAAGTGAGACCTAACGCTCCCAAGATTTCAATTCCAAATTCAGTTACTAGGGAACAAGAAAAGGAGATCAGCGTGGCTGCTGTGGGAACCAGTCATCAGTCTACAACTGTATCTTCAGGAGTTGATAATCATACAGTAGGTGGAGGATCCACTTCGTCTGACACTGTACCTGGCCGTGTACTGAAGACTTCACGTTCTGCTTCCCCTCCATCCCAAAGTGGATCCTCTTCGACTTTGACTTATTTCTGTACTTCAAATATGGACTCTACTCTTCAGCCACCAGCGAAAAGAAGTACATCATACACTAACATAGTTGCTGTACATCCACGGATGTCGAATATGACACTCCCAGAAGACTGCGTTGTGTTGTCCCTTAGTGATGAAACTTGGGTTGCTGTATCACCCATGAAGACCGAAGGTATAACAAATCACTCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

57.34

Weight (kDa)

7.72

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 3 - 65 8.5e-12 Double-stranded RNA binding motif
dsrm PF00035 213 - 277 1.8e-14 Double-stranded RNA binding motif
dsrm PF00035 291 - 356 6.2e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 272, 700, 722
AccI GTMKAC 4 cut(s) 141, 622, 687, 1286
AciI CCGC 6 cut(s) 180, 213, 220, 270, 700, 720
AclWI GGATC 6 cut(s) 147, 1084, 1326, 1339, 1401, 1414
AcoI YGGCCR 3 cut(s) 44, 121, 1357
AcsI RAATTY 3 cut(s) 128, 773, 1222
AcuI CTGAAG 4 cut(s) 133, 1284, 1388, 1442
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 9 cut(s) 59, 736, 872, 918, 1353, 1365, 1435, 1480, 1506
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 913
AgeI ACCGGT 1 cut(s) 1001
AgsI TTSAA 8 cut(s) 7, 133, 599, 730, 899, 972, 1215, 1440
AjnI CCWGG 2 cut(s) 1107, 1354
AluBI AGCT 5 cut(s) 16, 25, 646, 809, 1027
AluI AGCT 5 cut(s) 16, 25, 646, 809, 1027
Alw26I GTCTC 1 cut(s) 1186
AlwI GGATC 6 cut(s) 147, 1084, 1326, 1339, 1401, 1414
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 5 cut(s) 44, 76, 121, 165, 1357
ApeKI GCWGC 9 cut(s) 16, 63, 646, 649, 806, 809, 1043, 1052, 1262
ApoI RAATTY 3 cut(s) 128, 773, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
AsiGI ACCGGT 1 cut(s) 1001
Asp700I GAANNNNTTC 2 cut(s) 777, 894
AspS9I GGNCC 3 cut(s) 76, 166, 707
AsuHPI GGTGA 3 cut(s) 614, 956, 1578
AsuII TTCGAA 1 cut(s) 1148
AvaII GGWCC 1 cut(s) 707
AxyI CCTNAGG 2 cut(s) 289, 378
BaeGI GKGCMC 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 1278, 1311
BamHI GGATCC 2 cut(s) 1331, 1406
BbsI GAAGAC 3 cut(s) 1376, 1545, 1601
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 9 cut(s) 3, 75, 633, 661, 796, 818, 1039, 1055, 1249
BccI CCATC 4 cut(s) 395, 743, 1165, 1402
BceAI ACGGC 4 cut(s) 31, 108, 136, 1344
BciT130I CCWGG 2 cut(s) 1109, 1356
BcoDI GTCTC 1 cut(s) 1186
BfaI CTAG 2 cut(s) 183, 1233
BfmI CTRYAG 4 cut(s) 17, 647, 810, 925
BglII AGATCT 1 cut(s) 611
Bme1390I CCNGG 2 cut(s) 1109, 1356
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 3 cut(s) 76, 166, 707
BmiI GGNNCC 5 cut(s) 562, 1170, 1273, 1333, 1408
BmrFI CCNGG 2 cut(s) 1109, 1356
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 784
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 3 cut(s) 1376, 1545, 1601
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1148
BpuEI CTTGAG 1 cut(s) 342
Bsa29I ATCGAT 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1186
BsaJI CCNNGG 3 cut(s) 975, 1107, 1511
BsaWI WCCGGW 4 cut(s) 52, 863, 941, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 4 cut(s) 437, 470, 536, 1001
Bse1I ACTGG 3 cut(s) 312, 564, 1275
Bse21I CCTNAGG 2 cut(s) 289, 378
BseBI CCWGG 2 cut(s) 1109, 1356
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 975, 1107, 1511
BseGI GGATG 5 cut(s) 799, 938, 1394, 1507, 1521
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 3 cut(s) 312, 564, 1275
BseRI GAGGAG 3 cut(s) 366, 702, 1002
BseSI GKGCMC 1 cut(s) 314
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 9 cut(s) 3, 75, 633, 661, 796, 818, 1039, 1055, 1249
BsgI GTGCAG 1 cut(s) 1062
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 5 cut(s) 46, 78, 123, 167, 1359
BshTI ACCGGT 1 cut(s) 1001
BshVI ATCGAT 1 cut(s) 747
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 7 cut(s) 53, 438, 471, 537, 864, 942, 1002
BslFI GGGAC 1 cut(s) 1540
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 1186
BsmFI GGGAC 1 cut(s) 1540
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 5 cut(s) 46, 78, 123, 167, 1359
Bso31I GGTCTC 1 cut(s) 1186
Bsp119I TTCGAA 1 cut(s) 1148
Bsp1286I GDGCHC 1 cut(s) 314
Bsp1407I TGTACA 3 cut(s) 734, 870, 1504
BspACI CCGC 6 cut(s) 180, 213, 220, 270, 700, 720
BspANI GGCC 5 cut(s) 46, 78, 123, 167, 1359
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 5 cut(s) 562, 1170, 1273, 1333, 1408
BspMAI CTGCAG 3 cut(s) 21, 651, 814
BspPI GGATC 6 cut(s) 147, 1084, 1326, 1339, 1401, 1414
BspT104I TTCGAA 1 cut(s) 1148
BspTNI GGTCTC 1 cut(s) 1186
BsrBI CCGCTC 3 cut(s) 272, 700, 722
BsrFI RCCGGY 4 cut(s) 437, 470, 536, 1001
BsrGI TGTACA 3 cut(s) 734, 870, 1504
BsrI ACTGG 3 cut(s) 312, 564, 1275
BssAI RCCGGY 4 cut(s) 437, 470, 536, 1001
BssECI CCNNGG 3 cut(s) 975, 1107, 1511
BssNAI GTATAC 1 cut(s) 623
BssNI GRCGYC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 1109, 1356
Bst6I CTCTTC 2 cut(s) 1417, 1461
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 5 cut(s) 434, 467, 533, 818, 1052
BstAUI TGTACA 3 cut(s) 734, 870, 1504
BstBI TTCGAA 1 cut(s) 1148
BstC8I GCNNGC 2 cut(s) 189, 1029
BstDSI CCRYGG 2 cut(s) 975, 1511
BstF5I GGATG 5 cut(s) 799, 938, 1394, 1507, 1521
BstMAI GTCTC 1 cut(s) 1186
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 9 cut(s) 22, 188, 434, 467, 533, 803, 818, 1049, 1052
BstNI CCWGG 2 cut(s) 1109, 1356
BstNSI RCATGY 3 cut(s) 806, 917, 958
BstSCI CCNGG 2 cut(s) 1107, 1354
BstSFI CTRYAG 4 cut(s) 17, 647, 810, 925
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 9 cut(s) 3, 75, 633, 661, 796, 818, 1039, 1055, 1249
BstV2I GAAGAC 3 cut(s) 1376, 1545, 1601
BstX2I RGATCY 4 cut(s) 152, 611, 1331, 1406
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 4 cut(s) 152, 611, 1331, 1406
BstZ17I GTATAC 1 cut(s) 623
BstZI CGGCCG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 747
Bsu36I CCTNAGG 2 cut(s) 289, 378
BsuRI GGCC 5 cut(s) 46, 78, 123, 167, 1359
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 2 cut(s) 975, 1511
BtsCI GGATG 5 cut(s) 799, 938, 1394, 1507, 1521
BtsI GCAGTG 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 189, 1029
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 4 cut(s) 437, 470, 536, 1001
Cfr13I GGNCC 3 cut(s) 76, 166, 707
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 1 cut(s) 185
Csp6I GTAC 9 cut(s) 58, 735, 871, 917, 1352, 1364, 1434, 1479, 1505
CspAI ACCGGT 1 cut(s) 1001
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 6 cut(s) 716, 803, 914, 955, 1165, 1591
CviQI GTAC 9 cut(s) 58, 735, 871, 917, 1352, 1364, 1434, 1479, 1505
EaeI YGGCCR 3 cut(s) 44, 121, 1357
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 1417, 1461
EarI CTCTTC 2 cut(s) 1417, 1461
EclXI CGGCCG 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 1186
Eco47I GGWCC 1 cut(s) 707
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 4 cut(s) 133, 1284, 1388, 1442
Eco81I CCTNAGG 2 cut(s) 289, 378
EcoO109I RGGNCCY 2 cut(s) 76, 707
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 1107, 1354
FaeI CATG 6 cut(s) 719, 806, 917, 958, 1168, 1594
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 1540
FatI CATG 6 cut(s) 715, 802, 913, 954, 1164, 1590
FauI CCCGC 4 cut(s) 220, 227, 277, 693
FblI GTMKAC 4 cut(s) 141, 622, 687, 1286
FokI GGATG 5 cut(s) 806, 925, 1381, 1494, 1528
FspBI CTAG 2 cut(s) 183, 1233
HaeIII GGCC 5 cut(s) 46, 78, 123, 167, 1359
HapII CCGG 7 cut(s) 53, 438, 471, 537, 864, 942, 1002
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 719, 806, 917, 958, 1168, 1594
HincII GTYRAC 2 cut(s) 142, 911
HindII GTYRAC 2 cut(s) 142, 911
HinfI GANTC 7 cut(s) 250, 355, 670, 846, 860, 992, 1448
HpaII CCGG 7 cut(s) 53, 438, 471, 537, 864, 942, 1002
HphI GGTGA 3 cut(s) 614, 956, 1578
Hpy166II GTNNAC 7 cut(s) 142, 623, 688, 911, 947, 1287, 1364
Hpy188I TCNGA 5 cut(s) 152, 573, 1089, 1104, 1345
Hpy188III TCNNGA 5 cut(s) 291, 359, 770, 1172, 1302
Hpy8I GTNNAC 7 cut(s) 142, 623, 688, 911, 947, 1287, 1364
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 9 cut(s) 31, 157, 202, 593, 698, 784, 899, 1121, 1595
HpyCH4IV ACGT 1 cut(s) 1378
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 188, 434, 467, 533, 803, 818, 1049, 1052
HpySE526I ACGT 1 cut(s) 1378
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 719, 806, 917, 958, 1168, 1594
LmnI GCTCC 6 cut(s) 22, 271, 277, 1159, 1174, 1207
Lsp1109I GCAGC 9 cut(s) 3, 75, 633, 661, 796, 818, 1039, 1055, 1249
LweI GCATC 1 cut(s) 784
MaeI CTAG 2 cut(s) 183, 1233
MaeII ACGT 1 cut(s) 1378
MaeIII GTNAC 3 cut(s) 48, 739, 1228
MbiI CCGCTC 3 cut(s) 272, 700, 722
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 4 cut(s) 152, 611, 1331, 1406
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 6 cut(s) 128, 344, 773, 894, 1215, 1222
MlyI GAGTC 4 cut(s) 259, 349, 855, 1442
MroXI GAANNNNTTC 2 cut(s) 777, 894
MspA1I CMGCKG 2 cut(s) 646, 809
MspI CCGG 7 cut(s) 53, 438, 471, 537, 864, 942, 1002
MspR9I CCNGG 2 cut(s) 1109, 1356
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 2 cut(s) 1109, 1356
MwoI GCNNNNNNNGC 9 cut(s) 22, 188, 434, 467, 533, 803, 818, 1049, 1052
NlaIII CATG 6 cut(s) 719, 806, 917, 958, 1168, 1594
NlaIV GGNNCC 5 cut(s) 562, 1170, 1273, 1333, 1408
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 3 cut(s) 806, 917, 958
NspV TTCGAA 1 cut(s) 1148
PciI ACATGT 1 cut(s) 913
PctI GAATGC 1 cut(s) 1156
PdmI GAANNNNTTC 2 cut(s) 777, 894
PfeI GAWTC 3 cut(s) 670, 860, 992
PinAI ACCGGT 1 cut(s) 1001
PleI GAGTC 4 cut(s) 258, 349, 854, 1442
PpsI GAGTC 4 cut(s) 258, 349, 854, 1442
PpuMI RGGWCCY 1 cut(s) 707
PscI ACATGT 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 2 cut(s) 1107, 1354
PspGI CCWGG 2 cut(s) 1107, 1354
PspN4I GGNNCC 5 cut(s) 562, 1170, 1273, 1333, 1408
PspPI GGNCC 3 cut(s) 76, 166, 707
PspPPI RGGWCCY 1 cut(s) 707
PstI CTGCAG 3 cut(s) 21, 651, 814
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 4 cut(s) 152, 611, 1331, 1406
PvuII CAGCTG 2 cut(s) 646, 809
RsaI GTAC 9 cut(s) 59, 736, 872, 918, 1353, 1365, 1435, 1480, 1506
RsaNI GTAC 9 cut(s) 58, 735, 871, 917, 1352, 1364, 1434, 1479, 1505
SalI GTCGAC 1 cut(s) 140
Sau96I GGNCC 3 cut(s) 76, 166, 707
SchI GAGTC 4 cut(s) 259, 349, 855, 1442
ScrFI CCNGG 2 cut(s) 1109, 1356
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 1 cut(s) 784
SfcI CTRYAG 4 cut(s) 17, 647, 810, 925
SfuI TTCGAA 1 cut(s) 1148
SinI GGWCC 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 6 cut(s) 128, 344, 773, 894, 1215, 1222
SsiI CCGC 6 cut(s) 180, 213, 220, 270, 700, 720
SspMI CTAG 2 cut(s) 183, 1233
StyD4I CCNGG 2 cut(s) 1107, 1354
TaiI ACGT 1 cut(s) 1381
TaqI TCGA 9 cut(s) 11, 81, 141, 195, 234, 747, 1148, 1415, 1520
TaqII GACCGA 1 cut(s) 1613
TasI AATT 6 cut(s) 128, 344, 773, 894, 1215, 1222
TatI WGTACW 7 cut(s) 57, 734, 870, 1363, 1433, 1478, 1504
TauI GCSGC 2 cut(s) 182, 722
TfiI GAWTC 3 cut(s) 670, 860, 992
TseI GCWGC 9 cut(s) 16, 63, 646, 649, 806, 809, 1043, 1052, 1262
TspDTI ATGAA 2 cut(s) 1581, 1607
TspGWI ACGGA 1 cut(s) 1528
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 128, 773, 1222
XceI RCATGY 3 cut(s) 806, 917, 958
XmiI GTMKAC 4 cut(s) 141, 622, 687, 1286
XmnI GAANNNNTTC 2 cut(s) 777, 894
XspI CTAG 2 cut(s) 183, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.