FvH4_6g26590

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001836
Physical Location & Seq
Reverse (-)
20297877 .. 20302739
4863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26590.t3

Sequence Viewer

Length: 1341 bp
ATGTTCAAGTCGAAGCTGCAGGAGGTGTGCCAGAAGAAGGCTTGGGCCTTACCGGAGTACAGCAGCACCAAGGAGGGCGTCGATCACGACCCTAGCTTCTCCGCCTCCGTCCTCGTCAACGGCCTCACTTTCCACACTCCCCAATCCTTCCGCTCCTCTAAGCTCGCCCAAAACGACGCCGCTCGCCTCGCATTCGAGCACTTTTCTGCCGCCGCGCCCCTCCCTGTTTCCCGCCCCGCTCCTTCCACTTTCCCTCAGCCCAGTCTTATCGCAGGACTTCCCGTAGGATCTCAGATCAGCGACAATACGACAGTTGTCGGTTCTCAGAACAGTGGCAGCACATTAAGTGATAACTATTCCAAAGATGTACAGCATCATAAGAACCAGCTGCAATATTATGCTCAAAAGAGGAACCTAAATTTACCTGTGTACTCTTGTGAGCGTGAAGGTCCTCCTCATGCCGCTCGTTTCAAATGTACTGTAACAATTGATGGACAGACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCAAAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTCCAAGAAGATGATACTGGTTTGTACAAGAACCTTCTACAAGAACTACTTCAAAAAGAAGGTCAACATGTGCCTCTTTATAGCACAACGACATCAGGTGAACCTCACATGCCTAGGTTTGTTTCAACCGTGGAGATTGGAGGCGAATACTTTACAGGTGAGGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGTTGCTTACAACACTCTGAGAGATCGTAAGTTGAGTCATATTCCATTGTTTCCCACCCCGGCTACTGAAGGTCAAGTCTGTTCTGAGTTATTATCATCTAAGGCTCCATCAGTTGTAGCGGCTGATCTACAACAACAAATGAGACCCAACACAATTCCAAATTCAGTTAAAAGGGAACCAGAATCGGAGATGAGTGTGGCTGCAGTGGGAACCAGTCGTCAGGGGACAACTCCATCTTTGGGAGTTATTAGTGTTACTGTTGGTGGAGGATCCACTTTATCTGGCACTGTACATGCCCGTCAACCGGAGACTTCACGTTCTGCTTCCCCTGAGCCCCAAAACGATTTGTTTTCGACGTTGGCTTCAGACTATAACTCAGATGTGGACTCTACTCTTGAGCCAGCAGCAAAGAGATTCTTCTCTAACAAGGTTTCTGTGCATCCACGGATGGCGGCGGCACTCCCTGAAGACTGTATCGTGTTACCCTTTAGTGATGAAAATTGGGTTGCTGTATCACCTATGAAGTCAGAATGTAGAATGGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

447

Amino Acids

48.28

Weight (kDa)

6.24

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 41 - 105 3.9e-14 Double-stranded RNA binding motif
dsrm PF00035 119 - 184 1.3e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 153, 182, 239, 464
AccII CGCG 1 cut(s) 215
AclWI GGATC 3 cut(s) 295, 1056, 1069
AcsI RAATTY 3 cut(s) 418, 515, 952
AcuI CTGAAG 3 cut(s) 879, 1140, 1278
AcyI GRCGYC 2 cut(s) 78, 177
AfaI GTAC 6 cut(s) 59, 369, 431, 478, 614, 1083
AfiI CCNNNNNNNGG 3 cut(s) 37, 1031, 1096
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 4 cut(s) 7, 472, 641, 714
AluBI AGCT 6 cut(s) 16, 96, 163, 388, 551, 769
AluI AGCT 6 cut(s) 16, 96, 163, 388, 551, 769
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 928, 1094
AlwI GGATC 3 cut(s) 295, 1056, 1069
AoxI GGCC 2 cut(s) 45, 121
ApeKI GCWGC 9 cut(s) 16, 63, 336, 388, 548, 551, 785, 992, 1196
ApoI RAATTY 3 cut(s) 418, 515, 952
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
Asp700I GAANNNNTTC 2 cut(s) 519, 636
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 45, 449
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 3 cut(s) 698, 758, 1299
AvaII GGWCC 1 cut(s) 449
AvrII CCTAGG 1 cut(s) 701
BamHI GGATCC 1 cut(s) 1061
BanII GRGCYC 1 cut(s) 1128
BbsI GAAGAC 1 cut(s) 1266
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 9 cut(s) 3, 75, 348, 375, 538, 560, 797, 979, 1208
BccI CCATC 4 cut(s) 485, 907, 1033, 1234
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 2 cut(s) 928, 1094
BfaI CTAG 2 cut(s) 93, 702
BfmI CTRYAG 2 cut(s) 17, 993
BlnI CCTAGG 1 cut(s) 701
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 45, 449
BmiI GGNNCC 5 cut(s) 413, 897, 969, 1003, 1063
BmrFI CCNGG 1 cut(s) 851
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 3 cut(s) 382, 526, 1240
BmuI ACTGGG 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 1266
Bpu10I CCTNAGC 2 cut(s) 255, 1122
BpuEI CTTGAG 1 cut(s) 1208
BpuMI CCSGG 1 cut(s) 851
BsaHI GRCGYC 2 cut(s) 78, 177
BsaI GGTCTC 1 cut(s) 928
BsaJI CCNNGG 5 cut(s) 69, 701, 717, 849, 1235
BsaWI WCCGGW 2 cut(s) 52, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 1031, 1096
Bse1I ACTGG 3 cut(s) 261, 610, 1005
BseDI CCNNGG 5 cut(s) 69, 701, 717, 849, 1235
BseGI GGATG 3 cut(s) 541, 1231, 1245
BseLI CCNNNNNNNGG 3 cut(s) 37, 1031, 1096
BseMII CTCAG 7 cut(s) 269, 305, 338, 800, 867, 1113, 1182
BseNI ACTGG 3 cut(s) 261, 610, 1005
BseRI GAGGAG 2 cut(s) 145, 444
BseXI GCAGC 9 cut(s) 3, 75, 348, 375, 538, 560, 797, 979, 1208
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 2 cut(s) 47, 123
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 3 cut(s) 53, 851, 1097
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 3 cut(s) 37, 1031, 1096
BsmAI GTCTC 2 cut(s) 928, 1094
BsmFI GGGAC 1 cut(s) 1030
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 2 cut(s) 47, 123
Bso31I GGTCTC 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 201, 1128
Bsp1407I TGTACA 3 cut(s) 367, 612, 1081
Bsp143I GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
BspANI GGCC 2 cut(s) 47, 123
BspCNI CTCAG 7 cut(s) 268, 304, 337, 801, 868, 1114, 1181
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 5 cut(s) 413, 897, 969, 1003, 1063
BspMAI CTGCAG 2 cut(s) 21, 997
BspPI GGATC 3 cut(s) 295, 1056, 1069
BspTNI GGTCTC 1 cut(s) 928
BsrBI CCGCTC 4 cut(s) 153, 182, 239, 464
BsrGI TGTACA 3 cut(s) 367, 612, 1081
BsrI ACTGG 3 cut(s) 261, 610, 1005
BssECI CCNNGG 5 cut(s) 69, 701, 717, 849, 1235
BssMI GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
BssNI GRCGYC 2 cut(s) 78, 177
BssT1I CCWWGG 2 cut(s) 69, 701
Bst4CI ACNGT 8 cut(s) 313, 332, 481, 529, 718, 1051, 1081, 1265
BstACI GRCGYC 2 cut(s) 78, 177
BstAPI GCANNNNNTGC 2 cut(s) 560, 794
BstAUI TGTACA 3 cut(s) 367, 612, 1081
BstC8I GCNNGC 4 cut(s) 165, 184, 771, 1194
BstDEI CTNAG 9 cut(s) 159, 255, 291, 324, 809, 876, 891, 1122, 1168
BstDSI CCRYGG 2 cut(s) 717, 1235
BstF5I GGATG 3 cut(s) 541, 1231, 1245
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 8 cut(s) 85, 290, 297, 570, 817, 919, 1064, 1336
BstMAI GTCTC 2 cut(s) 928, 1094
BstMBI GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
BstMWI GCNNNNNNNGC 4 cut(s) 188, 545, 560, 794
BstNSI RCATGY 4 cut(s) 548, 659, 700, 1088
BstPAI GACNNNNGTC 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 2 cut(s) 17, 993
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 9 cut(s) 3, 75, 348, 375, 538, 560, 797, 979, 1208
BstV2I GAAGAC 1 cut(s) 1266
BstX2I RGATCY 2 cut(s) 287, 1061
BstYI RGATCY 2 cut(s) 287, 1061
BsuRI GGCC 2 cut(s) 47, 123
BtgI CCRYGG 2 cut(s) 717, 1235
BtsCI GGATG 3 cut(s) 541, 1231, 1245
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 4 cut(s) 337, 525, 1002, 1077
Cac8I GCNNGC 4 cut(s) 165, 184, 771, 1194
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 45, 449
CseI GACGC 2 cut(s) 67, 185
Csp6I GTAC 6 cut(s) 58, 368, 430, 477, 613, 1082
CviAII CATG 5 cut(s) 458, 545, 656, 697, 1085
CviQI GTAC 6 cut(s) 58, 368, 430, 477, 613, 1082
DdeI CTNAG 9 cut(s) 159, 255, 291, 324, 809, 876, 891, 1122, 1168
DpnI GATC 8 cut(s) 84, 289, 296, 569, 816, 918, 1063, 1335
DpnII GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 69, 701
Eco24I GRGCYC 1 cut(s) 1128
Eco31I GGTCTC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 3 cut(s) 879, 1140, 1278
EcoO109I RGGNCCY 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 69, 701
EcoT38I GRGCYC 1 cut(s) 1128
ErhI CCWWGG 2 cut(s) 69, 701
FaeI CATG 5 cut(s) 461, 548, 659, 700, 1088
FalI AAGNNNNNCTT 6 cut(s) 504, 536, 621, 653, 1193, 1225
FaqI GGGAC 1 cut(s) 1030
FatI CATG 5 cut(s) 457, 544, 655, 696, 1084
FauI CCCGC 2 cut(s) 239, 244
FokI GGATG 3 cut(s) 548, 1218, 1252
FriOI GRGCYC 1 cut(s) 1128
FspBI CTAG 2 cut(s) 93, 702
GlaI GCGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 47, 123
HapII CCGG 3 cut(s) 53, 851, 1097
HgaI GACGC 2 cut(s) 67, 185
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 2 cut(s) 78, 177
Hin1II CATG 5 cut(s) 461, 548, 659, 700, 1088
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 3 cut(s) 118, 653, 1094
HindII GTYRAC 3 cut(s) 118, 653, 1094
HinfI GANTC 5 cut(s) 588, 826, 974, 1178, 1206
HpaII CCGG 3 cut(s) 53, 851, 1097
HphI GGTGA 3 cut(s) 698, 758, 1299
Hpy166II GTNNAC 6 cut(s) 118, 430, 653, 689, 1094, 1177
Hpy188I TCNGA 8 cut(s) 294, 327, 810, 877, 979, 1159, 1171, 1321
Hpy188III TCNNGA 3 cut(s) 86, 512, 1187
Hpy8I GTNNAC 6 cut(s) 118, 430, 653, 689, 1094, 1177
Hpy99I CGWCG 3 cut(s) 83, 179, 1150
HpyAV CCTTC 8 cut(s) 31, 157, 252, 440, 526, 632, 641, 854
HpyCH4III ACNGT 8 cut(s) 313, 332, 481, 529, 718, 1051, 1081, 1265
HpyCH4IV ACGT 2 cut(s) 1108, 1148
HpyCH4V TGCA 7 cut(s) 19, 391, 548, 554, 785, 995, 1231
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 545, 560, 794
HpyF3I CTNAG 9 cut(s) 159, 255, 291, 324, 809, 876, 891, 1122, 1168
HpySE526I ACGT 2 cut(s) 1108, 1148
Hsp92I GRCGYC 2 cut(s) 78, 177
Hsp92II CATG 5 cut(s) 461, 548, 659, 700, 1088
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
LmnI GCTCC 3 cut(s) 158, 244, 901
Lsp1109I GCAGC 9 cut(s) 3, 75, 348, 375, 538, 560, 797, 979, 1208
LweI GCATC 3 cut(s) 382, 526, 1240
MaeI CTAG 2 cut(s) 93, 702
MaeII ACGT 2 cut(s) 1108, 1148
MaeIII GTNAC 3 cut(s) 481, 1045, 1272
MalI GATC 8 cut(s) 84, 289, 296, 569, 816, 918, 1063, 1335
MbiI CCGCTC 4 cut(s) 153, 182, 239, 464
MboI GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
MboII GAAGA 5 cut(s) 46, 512, 608, 1201, 1271
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 287, 1061
MhlI GDGCHC 2 cut(s) 201, 1128
MluCI AATT 6 cut(s) 418, 486, 515, 945, 952, 1291
MlyI GAGTC 3 cut(s) 597, 835, 1172
MroXI GAANNNNTTC 2 cut(s) 519, 636
MseI TTAA 2 cut(s) 344, 960
MspA1I CMGCKG 2 cut(s) 388, 551
MspI CCGG 3 cut(s) 53, 851, 1097
MspR9I CCNGG 1 cut(s) 851
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 191
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 188, 545, 560, 794
NciI CCSGG 1 cut(s) 851
NdeII GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
NlaIII CATG 5 cut(s) 461, 548, 659, 700, 1088
NlaIV GGNNCC 5 cut(s) 413, 897, 969, 1003, 1063
NspI RCATGY 4 cut(s) 548, 659, 700, 1088
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 191
PdmI GAANNNNTTC 2 cut(s) 519, 636
PfeI GAWTC 2 cut(s) 974, 1206
PleI GAGTC 3 cut(s) 596, 834, 1172
PpsI GAGTC 3 cut(s) 596, 834, 1172
PpuMI RGGWCCY 1 cut(s) 449
PscI ACATGT 1 cut(s) 655
PshAI GACNNNNGTC 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 449
PspN4I GGNNCC 5 cut(s) 413, 897, 969, 1003, 1063
PspPI GGNCC 2 cut(s) 45, 449
PspPPI RGGWCCY 1 cut(s) 449
PstI CTGCAG 2 cut(s) 21, 997
PsuI RGATCY 2 cut(s) 287, 1061
PvuII CAGCTG 2 cut(s) 388, 551
RsaI GTAC 6 cut(s) 59, 369, 431, 478, 614, 1083
RsaNI GTAC 6 cut(s) 58, 368, 430, 477, 613, 1082
SaqAI TTAA 2 cut(s) 344, 960
Sau3AI GATC 8 cut(s) 82, 287, 294, 567, 814, 916, 1061, 1333
Sau96I GGNCC 2 cut(s) 45, 449
SchI GAGTC 3 cut(s) 597, 835, 1172
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 2 cut(s) 201, 1128
SfaNI GCATC 3 cut(s) 382, 526, 1240
SfcI CTRYAG 2 cut(s) 17, 993
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 6 cut(s) 418, 486, 515, 945, 952, 1291
SspI AATATT 1 cut(s) 395
SspMI CTAG 2 cut(s) 93, 702
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 2 cut(s) 69, 701
TaaI ACNGT 8 cut(s) 313, 332, 481, 529, 718, 1051, 1081, 1265
TaiI ACGT 2 cut(s) 1111, 1151
TaqI TCGA 4 cut(s) 11, 81, 195, 1145
TasI AATT 6 cut(s) 418, 486, 515, 945, 952, 1291
TatI WGTACW 6 cut(s) 57, 367, 429, 476, 612, 1081
TauI GCSGC 7 cut(s) 182, 212, 215, 464, 914, 1247, 1250
TfiI GAWTC 2 cut(s) 974, 1206
Tru1I TTAA 2 cut(s) 344, 960
Tru9I TTAA 2 cut(s) 344, 960
TscAI CASTG 4 cut(s) 337, 532, 1002, 1084
TseI GCWGC 9 cut(s) 16, 63, 336, 388, 548, 551, 785, 992, 1196
TspDTI ATGAA 2 cut(s) 1302, 1328
TspGWI ACGGA 2 cut(s) 97, 1252
TspRI CASTG 4 cut(s) 337, 532, 1002, 1084
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 3 cut(s) 418, 515, 952
XceI RCATGY 4 cut(s) 548, 659, 700, 1088
XmaJI CCTAGG 1 cut(s) 701
XmnI GAANNNNTTC 2 cut(s) 519, 636
XspI CTAG 2 cut(s) 93, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.