Rh2DG352500

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001836
Physical Location & Seq
Reverse (-)
49314780 .. 49320197
5418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG352500.1

Sequence Viewer

Length: 1074 bp
ATGTTCAAGTCGAAGCTGCAGGAGCTGTGCCAGAAGAAGGCGTGGCCGTTACCGGAGTACAGCAGCAACAAGGAGGGCCTCGACCACGACCCTCGTTTCTCAGCCACCGTCAAAATCAACGGCCGTGAATTCAACACTGTCGACCCCTTCAGATCCTCCAAGTTGGCCCAAAACGACGCCGCTAGGCTCGCCTTCGATCACTTCTCTGCCCCCGCTACCCGCCCCATTCCTTTCGATTTCCCTCAGCCGAGTCTTGTCGCTATCGCTCCCGCTCCCACTCCCTCAGGACTTCCCACAGGACTGGGCACTGATTGGAGTTTTACAAACACACCACTGCAATTGCAAAAGACTCAAGAAACACATCAACCTCCTCAGGTCAGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACTGTTGCCGGTTCTCAGGTCAGTGGTAATGCAACAAATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGCAACAGGTTCCAGTTCTCAGATCAGTGGCAGAGCATTAGGTGTTGAAGGTGATAATAGATCTAAAGGTATACAACATTTGCATAAGAACCAGCTGCAGCGTTATGCTCACAAGAGGAATCTCATTTTACCTGTCTACTCTTGTGAGCGGGAAGGTCCTCCTCATGCCGCTCGTTTCAAATGTACAGTAACAATCGATGGAAAAACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCAGAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTCCAAGAAGATGATTCCGGTTTGTACAAGAACCTTTTACAAGAACTAATTCAAAAAGAAGGTCAACATGTACCACTCTATAGCACAAGGACATCCGGTGAACCTCACATGCTTACTTTTGTTTCAACCGTGGAGATTGGAGGAGAATCTTTTACCGGTCAAGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGCTGCCTATAATACTTTGAGAGATCGTAAGTGCAGATTTCTTGAACTTACCAGATCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

357

Amino Acids

38.44

Weight (kDa)

8.93

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 3 - 65 4.6e-12 Double-stranded RNA binding motif
dsrm PF00035 200 - 264 9.9e-15 Double-stranded RNA binding motif
dsrm PF00035 278 - 343 3.3e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 272, 661, 683
AccI GTMKAC 3 cut(s) 141, 583, 648
AciI CCGC 6 cut(s) 180, 213, 220, 270, 661, 681
AclWI GGATC 2 cut(s) 147, 1059
AcoI YGGCCR 2 cut(s) 44, 121
AcsI RAATTY 2 cut(s) 128, 734
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 4 cut(s) 59, 697, 833, 879
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 874
AgeI ACCGGT 1 cut(s) 962
AgsI TTSAA 7 cut(s) 7, 133, 560, 691, 860, 933, 1055
AluBI AGCT 5 cut(s) 16, 25, 607, 770, 988
AluI AGCT 5 cut(s) 16, 25, 607, 770, 988
AlwI GGATC 2 cut(s) 147, 1059
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 4 cut(s) 44, 76, 121, 165
ApeKI GCWGC 8 cut(s) 16, 63, 607, 610, 767, 770, 1004, 1013
ApoI RAATTY 2 cut(s) 128, 734
ArsI GACNNNNNNTTYG 2 cut(s) 853, 885
AsiGI ACCGGT 1 cut(s) 962
Asp700I GAANNNNTTC 2 cut(s) 738, 855
AspS9I GGNCC 3 cut(s) 76, 166, 668
AsuHPI GGTGA 2 cut(s) 575, 917
AvaII GGWCC 1 cut(s) 668
AxyI CCTNAGG 2 cut(s) 283, 372
BaeGI GKGCMC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 8 cut(s) 3, 75, 594, 622, 757, 779, 1000, 1016
BccI CCATC 2 cut(s) 389, 704
BceAI ACGGC 3 cut(s) 31, 108, 136
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 4 cut(s) 17, 608, 771, 886
BglII AGATCT 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 76, 166, 668
BmiI GGNNCC 1 cut(s) 523
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 4 cut(s) 52, 824, 902, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 3 cut(s) 431, 497, 962
Bse1I ACTGG 2 cut(s) 306, 525
Bse21I CCTNAGG 2 cut(s) 283, 372
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 2 cut(s) 760, 899
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 9 cut(s) 114, 257, 297, 386, 419, 452, 485, 518, 545
BseNI ACTGG 2 cut(s) 306, 525
BseRI GAGGAG 3 cut(s) 360, 663, 963
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 8 cut(s) 3, 75, 594, 622, 757, 779, 1000, 1016
BsgI GTGCAG 2 cut(s) 1023, 1063
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 4 cut(s) 46, 78, 123, 167
BshTI ACCGGT 1 cut(s) 962
BshVI ATCGAT 1 cut(s) 708
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 6 cut(s) 53, 432, 498, 825, 903, 963
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 4 cut(s) 46, 78, 123, 167
Bsp1286I GDGCHC 1 cut(s) 308
Bsp1407I TGTACA 2 cut(s) 695, 831
Bsp143I GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
BspACI CCGC 6 cut(s) 180, 213, 220, 270, 661, 681
BspANI GGCC 4 cut(s) 46, 78, 123, 167
BspCNI CTCAG 9 cut(s) 113, 256, 296, 385, 418, 451, 484, 517, 544
BspDI ATCGAT 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 523
BspMAI CTGCAG 3 cut(s) 21, 612, 775
BspPI GGATC 2 cut(s) 147, 1059
BsrBI CCGCTC 3 cut(s) 272, 661, 683
BsrFI RCCGGY 3 cut(s) 431, 497, 962
BsrGI TGTACA 2 cut(s) 695, 831
BsrI ACTGG 2 cut(s) 306, 525
BssAI RCCGGY 3 cut(s) 431, 497, 962
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
BssNAI GTATAC 1 cut(s) 584
BssNI GRCGYC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 584
Bst4CI ACNGT 7 cut(s) 109, 139, 427, 493, 700, 748, 937
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 4 cut(s) 428, 494, 779, 1013
BstAUI TGTACA 2 cut(s) 695, 831
BstC8I GCNNGC 2 cut(s) 189, 990
BstDEI CTNAG 9 cut(s) 100, 243, 283, 372, 405, 438, 471, 504, 531
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 2 cut(s) 760, 899
BstKTI GATC 7 cut(s) 155, 199, 537, 575, 789, 1036, 1067
BstMBI GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 8 cut(s) 22, 188, 428, 494, 764, 779, 1010, 1013
BstNSI RCATGY 3 cut(s) 767, 878, 919
BstSFI CTRYAG 4 cut(s) 17, 608, 771, 886
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 8 cut(s) 3, 75, 594, 622, 757, 779, 1000, 1016
BstX2I RGATCY 3 cut(s) 152, 572, 1064
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 3 cut(s) 152, 572, 1064
BstZ17I GTATAC 1 cut(s) 584
BstZI CGGCCG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 708
Bsu36I CCTNAGG 2 cut(s) 283, 372
BsuRI GGCC 4 cut(s) 46, 78, 123, 167
BsuTUI ATCGAT 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 760, 899
BtsI GCAGTG 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 189, 990
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 3 cut(s) 431, 497, 962
Cfr13I GGNCC 3 cut(s) 76, 166, 668
ClaI ATCGAT 1 cut(s) 708
CseI GACGC 1 cut(s) 185
Csp6I GTAC 4 cut(s) 58, 696, 832, 878
CspAI ACCGGT 1 cut(s) 962
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 4 cut(s) 677, 764, 875, 916
CviQI GTAC 4 cut(s) 58, 696, 832, 878
DdeI CTNAG 9 cut(s) 100, 243, 283, 372, 405, 438, 471, 504, 531
DpnI GATC 7 cut(s) 154, 198, 536, 574, 788, 1035, 1066
DpnII GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
EaeI YGGCCR 2 cut(s) 44, 121
EagI CGGCCG 1 cut(s) 121
EclXI CGGCCG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 133
Eco81I CCTNAGG 2 cut(s) 283, 372
EcoO109I RGGNCCY 2 cut(s) 76, 668
EcoRI GAATTC 1 cut(s) 128
FaeI CATG 4 cut(s) 680, 767, 878, 919
FaiI YATR 9 cut(s) 584, 597, 618, 678, 765, 876, 888, 917, 1020
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FatI CATG 4 cut(s) 676, 763, 874, 915
FauI CCCGC 4 cut(s) 220, 227, 277, 654
FblI GTMKAC 3 cut(s) 141, 583, 648
FokI GGATG 2 cut(s) 767, 886
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 4 cut(s) 46, 78, 123, 167
HapII CCGG 6 cut(s) 53, 432, 498, 825, 903, 963
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 680, 767, 878, 919
HincII GTYRAC 2 cut(s) 142, 872
HindII GTYRAC 2 cut(s) 142, 872
HinfI GANTC 6 cut(s) 250, 349, 631, 807, 821, 953
HpaII CCGG 6 cut(s) 53, 432, 498, 825, 903, 963
HphI GGTGA 2 cut(s) 575, 917
Hpy166II GTNNAC 5 cut(s) 142, 584, 649, 872, 908
Hpy188I TCNGA 2 cut(s) 152, 534
Hpy188III TCNNGA 4 cut(s) 285, 353, 731, 1052
Hpy8I GTNNAC 5 cut(s) 142, 584, 649, 872, 908
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 7 cut(s) 31, 157, 202, 554, 659, 745, 860
HpyCH4III ACNGT 7 cut(s) 109, 139, 427, 493, 700, 748, 937
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 188, 428, 494, 764, 779, 1010, 1013
HpyF3I CTNAG 9 cut(s) 100, 243, 283, 372, 405, 438, 471, 504, 531
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 680, 767, 878, 919
Kzo9I GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
LmnI GCTCC 3 cut(s) 22, 271, 277
Lsp1109I GCAGC 8 cut(s) 3, 75, 594, 622, 757, 779, 1000, 1016
LweI GCATC 1 cut(s) 745
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 48, 700
MalI GATC 7 cut(s) 154, 198, 536, 574, 788, 1035, 1066
MbiI CCGCTC 3 cut(s) 272, 661, 683
MboI GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
MboII GAAGA 3 cut(s) 46, 731, 827
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 3 cut(s) 152, 572, 1064
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 128, 338, 734, 855
MlyI GAGTC 3 cut(s) 259, 343, 816
MroXI GAANNNNTTC 2 cut(s) 738, 855
MspA1I CMGCKG 2 cut(s) 607, 770
MspI CCGG 6 cut(s) 53, 432, 498, 825, 903, 963
MunI CAATTG 1 cut(s) 338
MwoI GCNNNNNNNGC 8 cut(s) 22, 188, 428, 494, 764, 779, 1010, 1013
NdeII GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
NlaIII CATG 4 cut(s) 680, 767, 878, 919
NlaIV GGNNCC 1 cut(s) 523
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 3 cut(s) 767, 878, 919
PciI ACATGT 1 cut(s) 874
PdmI GAANNNNTTC 2 cut(s) 738, 855
PfeI GAWTC 3 cut(s) 631, 821, 953
PinAI ACCGGT 1 cut(s) 962
PleI GAGTC 3 cut(s) 258, 343, 815
PpsI GAGTC 3 cut(s) 258, 343, 815
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 874
Psp5II RGGWCCY 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 3 cut(s) 76, 166, 668
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 3 cut(s) 21, 612, 775
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 3 cut(s) 152, 572, 1064
PvuII CAGCTG 2 cut(s) 607, 770
RsaI GTAC 4 cut(s) 59, 697, 833, 879
RsaNI GTAC 4 cut(s) 58, 696, 832, 878
SalI GTCGAC 1 cut(s) 140
Sau3AI GATC 7 cut(s) 152, 196, 534, 572, 786, 1033, 1064
Sau96I GGNCC 3 cut(s) 76, 166, 668
SchI GAGTC 3 cut(s) 259, 343, 816
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 4 cut(s) 17, 608, 771, 886
SinI GGWCC 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 4 cut(s) 128, 338, 734, 855
SsiI CCGC 6 cut(s) 180, 213, 220, 270, 661, 681
SspMI CTAG 1 cut(s) 183
TaaI ACNGT 7 cut(s) 109, 139, 427, 493, 700, 748, 937
TaqI TCGA 6 cut(s) 11, 81, 141, 195, 234, 708
TasI AATT 4 cut(s) 128, 338, 734, 855
TatI WGTACW 3 cut(s) 57, 695, 831
TauI GCSGC 2 cut(s) 182, 683
TfiI GAWTC 3 cut(s) 631, 821, 953
TseI GCWGC 8 cut(s) 16, 63, 607, 610, 767, 770, 1004, 1013
VpaK11BI GGWCC 1 cut(s) 668
XapI RAATTY 2 cut(s) 128, 734
XceI RCATGY 3 cut(s) 767, 878, 919
XmiI GTMKAC 3 cut(s) 141, 583, 648
XmnI GAANNNNTTC 2 cut(s) 738, 855
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.