Rh2AG325200

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001836
Physical Location & Seq
Reverse (-)
46733704 .. 46739164
5461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG325200.1

Sequence Viewer

Length: 1233 bp
ATGTTCAAGTCGAAGCTGCAGGAGCTGTGCCAGAAGAAGGCGTGGCCGTTACCGGAGTACAGCAGCAAGAAGGAGGGCCTCGATCACGACCCTCGTTTCTCAGCCACCGTCAAAATCAACGGCCTTGAATTCAACACTGTCGACCCCTTCAGATCCTCCAAGTTGGCCCAAAACGACGTCGCTAGGCTCGCCTTCGATCACTTCTCTGCTCCCGCTACCCGCCCCATTCCTTTCGATTTCCCTCAGCCGAGTCTTGTCGCTATCGCCCCCACTCCCTCAGGACTGGGCACTGATCGGAGTTTTACAAACACACCACTGCAATTGCAAAAGACTCAAGAAACACATCAACCTCCTCAGGTCAGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGATGGTTCTCAGGTCCGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGCAACAGGTTCCAGTTCTCAGATCAGTGGCAGAGCATTAGTTGTTGAAGGTGATAATAGATCTAAAGATATACAACATTTGCATAAGAACCAGCTGCAGCGTTATGCTCACAAGAGGAATCTCATTTTACCTGTCTACTCTTGTGAGCGGGTAGGTCCTCCTCATGCCGCTCGTTTCAAATGTACAGTAACAATCGATGGAAAAACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCGGAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTACAAGAAGATGATTCCGGTTTGTACAAGAACCTTTTACAAGAACTAATTCAAAAAGAAGGTCAACATGTACCACTCTATAGCACAAGGACATCCGGTGAACCTCACATGCTTACTTTTGTTTCAACCGTGGAGATTGGAGGAGAATCTTTTACCGGTCAAGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGCTGCCTATAATACTTTGAGAGATCGTAAGTCAAGTCCGATCCCGTTGTTTCTGACCCAGGCTTCACAAGGGCAAGAAGGATTGCAGTTCTTATCTTCGAATGCTCCATCATACATGGCTCCTGATCTACAACAACAAGTGAGACCTAACGCTCCCAAGATTTCAATTCCAAATTCAGTTACTAGGGAACAAGAAAAGGAGATCAGTGGTATGTTTTTGCATGAAGCTTTATACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

410

Amino Acids

44.42

Weight (kDa)

7.76

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 3 - 65 4.5e-10 Double-stranded RNA binding motif
dsrm PF00035 194 - 258 3.5e-14 Double-stranded RNA binding motif
dsrm PF00035 272 - 337 4.1e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccBSI CCGCTC 2 cut(s) 643, 665
AccI GTMKAC 2 cut(s) 141, 630
AciI CCGC 5 cut(s) 213, 220, 643, 663, 755
AclWI GGATC 2 cut(s) 147, 1027
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 3 cut(s) 128, 716, 1165
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 5 cut(s) 59, 679, 792, 815, 861
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 856
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 8 cut(s) 7, 128, 133, 542, 673, 842, 915, 1158
AjnI CCWGG 1 cut(s) 1050
AluBI AGCT 6 cut(s) 16, 25, 589, 752, 970, 1220
AluI AGCT 6 cut(s) 16, 25, 589, 752, 970, 1220
Alw26I GTCTC 1 cut(s) 1129
AlwI GGATC 2 cut(s) 147, 1027
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 4 cut(s) 44, 76, 121, 165
ApeKI GCWGC 8 cut(s) 16, 63, 589, 592, 749, 752, 986, 995
ApoI RAATTY 3 cut(s) 128, 716, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 835, 867
AsiGI ACCGGT 1 cut(s) 944
Asp700I GAANNNNTTC 2 cut(s) 720, 837
AspS9I GGNCC 4 cut(s) 76, 166, 424, 650
AsuHPI GGTGA 2 cut(s) 557, 899
AsuII TTCGAA 1 cut(s) 1091
AvaII GGWCC 2 cut(s) 424, 650
AxyI CCTNAGG 2 cut(s) 277, 354
BaeGI GKGCMC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 8 cut(s) 3, 75, 576, 604, 739, 761, 982, 998
BccI CCATC 5 cut(s) 371, 407, 437, 686, 1108
BceAI ACGGC 2 cut(s) 31, 136
BciT130I CCWGG 1 cut(s) 1052
BcoDI GTCTC 1 cut(s) 1129
BfaI CTAG 2 cut(s) 183, 1176
BfmI CTRYAG 3 cut(s) 17, 590, 868
BglII AGATCT 1 cut(s) 554
BisI GCNGC 9 cut(s) 17, 64, 590, 593, 663, 750, 753, 987, 996
BlsI GCNGC 9 cut(s) 18, 65, 591, 594, 664, 751, 754, 988, 997
Bme1390I CCNGG 1 cut(s) 1052
Bme18I GGWCC 2 cut(s) 424, 650
BmgT120I GGNCC 4 cut(s) 76, 166, 424, 650
BmiI GGNNCC 2 cut(s) 505, 1113
BmrFI CCNGG 1 cut(s) 1052
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 727
BmuI ACTGGG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1091
BpuEI CTTGAG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1129
BsaJI CCNNGG 3 cut(s) 427, 918, 1050
BsaWI WCCGGW 4 cut(s) 52, 806, 884, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 2 cut(s) 479, 944
Bse1I ACTGG 2 cut(s) 288, 507
Bse21I CCTNAGG 2 cut(s) 277, 354
BseBI CCWGG 1 cut(s) 1052
BseCI ATCGAT 1 cut(s) 690
BseDI CCNNGG 3 cut(s) 427, 918, 1050
BseGI GGATG 2 cut(s) 742, 881
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 9 cut(s) 114, 257, 291, 368, 401, 434, 467, 500, 527
BseNI ACTGG 2 cut(s) 288, 507
BseRI GAGGAG 3 cut(s) 342, 645, 945
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 8 cut(s) 3, 75, 576, 604, 739, 761, 982, 998
BsgI GTGCAG 1 cut(s) 1005
BshFI GGCC 4 cut(s) 46, 78, 123, 167
BshTI ACCGGT 1 cut(s) 944
BshVI ATCGAT 1 cut(s) 690
BsiSI CCGG 5 cut(s) 53, 480, 807, 885, 945
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 1129
BsmI GAATGC 1 cut(s) 1099
BsnI GGCC 4 cut(s) 46, 78, 123, 167
Bso31I GGTCTC 1 cut(s) 1129
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 1 cut(s) 290
Bsp1407I TGTACA 2 cut(s) 677, 813
BspACI CCGC 5 cut(s) 213, 220, 643, 663, 755
BspANI GGCC 4 cut(s) 46, 78, 123, 167
BspCNI CTCAG 9 cut(s) 113, 256, 290, 367, 400, 433, 466, 499, 526
BspDI ATCGAT 1 cut(s) 690
BspLI GGNNCC 2 cut(s) 505, 1113
BspMAI CTGCAG 2 cut(s) 21, 594
BspPI GGATC 2 cut(s) 147, 1027
BspT104I TTCGAA 1 cut(s) 1091
BspTNI GGTCTC 1 cut(s) 1129
BsrBI CCGCTC 2 cut(s) 643, 665
BsrFI RCCGGY 2 cut(s) 479, 944
BsrGI TGTACA 2 cut(s) 677, 813
BsrI ACTGG 2 cut(s) 288, 507
BssAI RCCGGY 2 cut(s) 479, 944
BssECI CCNNGG 3 cut(s) 427, 918, 1050
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 1052
Bst4CI ACNGT 7 cut(s) 109, 139, 409, 475, 682, 730, 919
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 2 cut(s) 476, 995
BstAUI TGTACA 2 cut(s) 677, 813
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 189, 972
BstDEI CTNAG 9 cut(s) 100, 243, 277, 354, 387, 420, 453, 486, 513
BstDSI CCRYGG 2 cut(s) 427, 918
BstF5I GGATG 2 cut(s) 742, 881
BstMAI GTCTC 1 cut(s) 1129
BstMWI GCNNNNNNNGC 7 cut(s) 22, 188, 476, 746, 761, 992, 995
BstNI CCWGG 1 cut(s) 1052
BstNSI RCATGY 3 cut(s) 749, 860, 901
BstSCI CCNGG 1 cut(s) 1050
BstSFI CTRYAG 3 cut(s) 17, 590, 868
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 8 cut(s) 3, 75, 576, 604, 739, 761, 982, 998
BstX2I RGATCY 2 cut(s) 152, 554
BstYI RGATCY 2 cut(s) 152, 554
Bsu15I ATCGAT 1 cut(s) 690
Bsu36I CCTNAGG 2 cut(s) 277, 354
BsuRI GGCC 4 cut(s) 46, 78, 123, 167
BsuTUI ATCGAT 1 cut(s) 690
BtgI CCRYGG 2 cut(s) 427, 918
BtsCI GGATG 2 cut(s) 742, 881
BtsI GCAGTG 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 189, 972
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 2 cut(s) 479, 944
Cfr13I GGNCC 4 cut(s) 76, 166, 424, 650
ClaI ATCGAT 1 cut(s) 690
Csp6I GTAC 5 cut(s) 58, 678, 791, 814, 860
CspAI ACCGGT 1 cut(s) 944
CspCI CAANNNNNGTGG 2 cut(s) 303, 338
CviAII CATG 6 cut(s) 659, 746, 857, 898, 1108, 1214
CviQI GTAC 5 cut(s) 58, 678, 791, 814, 860
DdeI CTNAG 9 cut(s) 100, 243, 277, 354, 387, 420, 453, 486, 513
EaeI YGGCCR 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 1129
Eco47I GGWCC 2 cut(s) 424, 650
Eco57I CTGAAG 1 cut(s) 133
Eco81I CCTNAGG 2 cut(s) 277, 354
EcoO109I RGGNCCY 2 cut(s) 76, 650
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 1050
FaeI CATG 6 cut(s) 662, 749, 860, 901, 1111, 1217
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 6 cut(s) 658, 745, 856, 897, 1107, 1213
FauI CCCGC 3 cut(s) 220, 227, 636
FblI GTMKAC 2 cut(s) 141, 630
Fnu4HI GCNGC 9 cut(s) 17, 64, 590, 593, 663, 750, 753, 987, 996
FokI GGATG 2 cut(s) 749, 868
Fsp4HI GCNGC 9 cut(s) 17, 64, 590, 593, 663, 750, 753, 987, 996
FspBI CTAG 2 cut(s) 183, 1176
GluI GCNGC 9 cut(s) 17, 64, 590, 593, 663, 750, 753, 987, 996
HaeIII GGCC 4 cut(s) 46, 78, 123, 167
HapII CCGG 5 cut(s) 53, 480, 807, 885, 945
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 662, 749, 860, 901, 1111, 1217
HincII GTYRAC 2 cut(s) 142, 854
HindII GTYRAC 2 cut(s) 142, 854
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 5 cut(s) 250, 331, 613, 803, 935
HpaII CCGG 5 cut(s) 53, 480, 807, 885, 945
HphI GGTGA 2 cut(s) 557, 899
Hpy166II GTNNAC 4 cut(s) 142, 631, 854, 890
Hpy188I TCNGA 5 cut(s) 152, 297, 516, 1032, 1047
Hpy188III TCNNGA 5 cut(s) 86, 279, 335, 713, 1115
Hpy8I GTNNAC 4 cut(s) 142, 631, 854, 890
Hpy99I CGWCG 2 cut(s) 179, 182
HpyAV CCTTC 8 cut(s) 31, 64, 157, 202, 536, 727, 842, 1064
HpyCH4III ACNGT 7 cut(s) 109, 139, 409, 475, 682, 730, 919
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 188, 476, 746, 761, 992, 995
HpyF3I CTNAG 9 cut(s) 100, 243, 277, 354, 387, 420, 453, 486, 513
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 662, 749, 860, 901, 1111, 1217
LmnI GCTCC 5 cut(s) 22, 214, 1102, 1117, 1150
Lsp1109I GCAGC 8 cut(s) 3, 75, 576, 604, 739, 761, 982, 998
LweI GCATC 1 cut(s) 727
MaeI CTAG 2 cut(s) 183, 1176
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 48, 682, 1171
MbiI CCGCTC 2 cut(s) 643, 665
MboII GAAGA 4 cut(s) 46, 713, 809, 1080
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 2 cut(s) 152, 554
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 6 cut(s) 128, 320, 716, 837, 1158, 1165
MlyI GAGTC 2 cut(s) 259, 325
MroXI GAANNNNTTC 2 cut(s) 720, 837
MspA1I CMGCKG 2 cut(s) 589, 752
MspI CCGG 5 cut(s) 53, 480, 807, 885, 945
MspR9I CCNGG 1 cut(s) 1052
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 1 cut(s) 1052
MwoI GCNNNNNNNGC 7 cut(s) 22, 188, 476, 746, 761, 992, 995
NlaIII CATG 6 cut(s) 662, 749, 860, 901, 1111, 1217
NlaIV GGNNCC 2 cut(s) 505, 1113
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 3 cut(s) 749, 860, 901
NspV TTCGAA 1 cut(s) 1091
PciI ACATGT 1 cut(s) 856
PctI GAATGC 1 cut(s) 1099
PdmI GAANNNNTTC 2 cut(s) 720, 837
PfeI GAWTC 3 cut(s) 613, 803, 935
PinAI ACCGGT 1 cut(s) 944
PkrI GCNGC 9 cut(s) 18, 65, 591, 594, 664, 751, 754, 988, 997
PleI GAGTC 2 cut(s) 258, 325
PpsI GAGTC 2 cut(s) 258, 325
PpuMI RGGWCCY 1 cut(s) 650
PscI ACATGT 1 cut(s) 856
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 1050
PspGI CCWGG 1 cut(s) 1050
PspN4I GGNNCC 2 cut(s) 505, 1113
PspPI GGNCC 4 cut(s) 76, 166, 424, 650
PspPPI RGGWCCY 1 cut(s) 650
PstI CTGCAG 2 cut(s) 21, 594
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 2 cut(s) 152, 554
PvuII CAGCTG 2 cut(s) 589, 752
RsaI GTAC 5 cut(s) 59, 679, 792, 815, 861
RsaNI GTAC 5 cut(s) 58, 678, 791, 814, 860
SalI GTCGAC 1 cut(s) 140
SatI GCNGC 9 cut(s) 17, 64, 590, 593, 663, 750, 753, 987, 996
Sau96I GGNCC 4 cut(s) 76, 166, 424, 650
SchI GAGTC 2 cut(s) 259, 325
ScrFI CCNGG 1 cut(s) 1052
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 3 cut(s) 17, 590, 868
SfuI TTCGAA 1 cut(s) 1091
SinI GGWCC 2 cut(s) 424, 650
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 6 cut(s) 128, 320, 716, 837, 1158, 1165
SsiI CCGC 5 cut(s) 213, 220, 643, 663, 755
SspMI CTAG 2 cut(s) 183, 1176
StyD4I CCNGG 1 cut(s) 1050
TaaI ACNGT 7 cut(s) 109, 139, 409, 475, 682, 730, 919
TaiI ACGT 1 cut(s) 180
TaqI TCGA 7 cut(s) 11, 81, 141, 195, 234, 690, 1091
TasI AATT 6 cut(s) 128, 320, 716, 837, 1158, 1165
TatI WGTACW 4 cut(s) 57, 677, 790, 813
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 3 cut(s) 613, 803, 935
TseI GCWGC 8 cut(s) 16, 63, 589, 592, 749, 752, 986, 995
TspDTI ATGAA 1 cut(s) 1230
TspGWI ACGGA 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 424, 650
XapI RAATTY 3 cut(s) 128, 716, 1165
XceI RCATGY 3 cut(s) 749, 860, 901
XmiI GTMKAC 2 cut(s) 141, 630
XmnI GAANNNNTTC 2 cut(s) 720, 837
XspI CTAG 2 cut(s) 183, 1176
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.