FvH4_1g28720

ETHYLENE INSENSITIVE 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
21017650 .. 21020954
3305 bp
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UTR
Exon/CDS
Intron
FvH4_1g28720.t1

Sequence Viewer

Length: 1746 bp
ATGATGATGATGTTTGATGAAATGGGATTTTGTGGTGATTTGGATTTTATATCTGCAACTCCTGGGGGAGAAGTGGCCATCCCACAGGCTGAAACTGAGGCCACTATGGAGGATGATTATACTGATGACGAGATTGATGTGGATGAGCTTGAGAGAAGGATGTGGAGAGATAAAATGCGACTCAAAAGACTCAAAGAACAGACGACTAAGGGTGGTAAGGATGTGATTGTCACCGCAAAGCAGAGGCAGTCTCAAGAGCAGGCAAGGAGGAAGAAGATGTCGAGGGCCCAAGATGGGATTTTAAAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTCTATGGTATTATTCCAGAGAAGGGCAAACCAGTCACAGGGGCATCGGACAATCTTCGTGAATGGTGGAAGGATAAAGTCAGGTTTGACCGTAATGGACCAGCAGCTATATCCAAGTACCAAGCTGATAATGCGGTTCCTGGCAGGAACGATGGGTGCAACCCAATTGGTCCGACCCCTCACACCTTGCAAGAGCTTCAAGACACTACTCTGGGTTCTCTCTTGTCAGCACTTATGCAGCACTGTGATCCTCCACAGAGGCGATTTCCTTTAGAGAAAGGTGTTCCACCACCGTGGTGGCCTTCTGGAAATGAGGAATGGTGGCCTGAACTTGGTTTGCCTAAGGATCAGGGTCCTCCACCATACAAGAAGCCACATGACTTGAAAAAGGCATGGAAGGTGGGTGTTCTCACCGCAGTTATTAAGCATATGTCTCCTGATATTGCCAAGATTCGTAAGCTTGTGAGGCAATCTAAATGCTTGCAAGACAAGATGACTGCTAAGGAGAGCTCTACCTGGCTAGCCATCATCAACCAAGAAGAGTGCCTGGCTCGAGAGCTTTACCCCAATTCTTGCCCCCCTTTGTCTTCAGCTGGGGCTAGTGGATCTTTGGTGGTTAATGATTGCAGTGAGTATGATGTTGAAGGGGCTGAAGATGAGCCAAACTTTGATGTGCAGGAGTGCAAGCCTGATAATCTTCATTCATTGAATTTTGGGATGGAAACAATGAGGGAGAGGCTTCAAGTCCATCAACCCACTTCCTTTCCAGTTAAAGGAGAAGTCATCACCAACTTAGAGTGCATGAGGAAAAGGAAGCCTTCAAGCGATCTAAATATGGTCGTGGATCAGAAGATCTACACCTGTGAGTTCGTTCAGTGTCCTTACAGCGAATTCCATCATGGTTTTCATGACAGAACATCCAGGGACAACCATCAATTGAGTTGCCCATTCAGTAACAGGTCTTCTGAGTTTGGGGCACCTAATCTCCTTGTTAATGAGATTAAGCCAATCATTTTCCCCCATTCCTTTGTCCAAAACAAGGCAGCAACTAGCTCCACCAAGCCAGTGCCACCTTCCTTTGATCTATCAGCCGGAGTTCCAGAGGATGGGCAGAAAATGATCAGTGATCTTATGTCATTCTACGATTGTAATGTTCAAGGTGACAAGAATGCAAATCCAAACAGCCTTGTGACAAACGTGAAGAATTTTTCTCAACCTAATGTTGCACATCAACAGGATGAATACTTCCGTGGTCAAGGAGTTCGGTTGGATGGGAACTTCTTTGAAGAATCCAACATCTCCAGTAATCATCACGTGTTTACTCGAGAGGAAGAAGATCTACAAGGTTTGGCATTGCCAATGGAGAAGCCGGTGGAGACTTCAATCTGGTTCCAGTGA

Protein Analysis

582

Amino Acids

65.76

Weight (kDa)

5.53

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIN3_DNA-bd PF04873 48 - 297 1.7e-132 Ethylene insensitive 3, DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1324
AccB7I CCANNNNNTGG 1 cut(s) 1454
AciI CCGC 3 cut(s) 234, 482, 762
AclWI GGATC 4 cut(s) 590, 702, 961, 1200
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 3 cut(s) 1057, 1238, 1552
AcuI CTGAAG 2 cut(s) 921, 1020
AcvI CACGTG 1 cut(s) 1663
AfaI GTAC 2 cut(s) 308, 467
AfiI CCNNNNNNNGG 7 cut(s) 294, 371, 386, 680, 1121, 1387, 1454
AflIII ACRYGT 2 cut(s) 309, 1662
AjnI CCWGG 5 cut(s) 61, 487, 863, 894, 1268
AleI CACNNNNGTG 2 cut(s) 640, 643
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 3 cut(s) 255, 786, 1718
AlwI GGATC 4 cut(s) 590, 702, 961, 1200
Ama87I CYCGRG 2 cut(s) 900, 1671
AoxI GGCC 5 cut(s) 75, 99, 285, 647, 671
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 452, 586, 1391
ApoI RAATTY 3 cut(s) 1057, 1238, 1552
AspS9I GGNCC 5 cut(s) 285, 286, 446, 518, 701
AsuHPI GGTGA 5 cut(s) 47, 223, 751, 1126, 1520
AsuNHI GCTAGC 1 cut(s) 868
AvaI CYCGRG 2 cut(s) 900, 1671
AvaII GGWCC 3 cut(s) 446, 518, 701
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 2 cut(s) 289, 1327
BalI TGGCCA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 1324
BanII GRGCYC 2 cut(s) 289, 860
BarI GAAGNNNNNNTAC 4 cut(s) 1294, 1326, 1671, 1703
BbrPI CACGTG 1 cut(s) 1663
BbsI GAAGAC 2 cut(s) 927, 1302
Bbv12I GWGCWC 1 cut(s) 860
BbvI GCAGC 3 cut(s) 464, 598, 1403
BciT130I CCWGG 5 cut(s) 63, 489, 865, 896, 1270
BclI TGATCA 1 cut(s) 1467
BcoDI GTCTC 3 cut(s) 255, 786, 1718
BfaI CTAG 3 cut(s) 869, 948, 1398
BglII AGATCT 2 cut(s) 1200, 1684
BisI GCNGC 3 cut(s) 453, 587, 1392
BlsI GCNGC 3 cut(s) 454, 588, 1393
Bme1390I CCNGG 5 cut(s) 63, 489, 865, 896, 1270
Bme18I GGWCC 3 cut(s) 446, 518, 701
BmeT110I CYCGRG 2 cut(s) 900, 1671
BmgT120I GGNCC 5 cut(s) 285, 286, 446, 518, 701
BmiI GGNNCC 5 cut(s) 287, 486, 702, 1326, 1739
BmrFI CCNGG 5 cut(s) 63, 489, 865, 896, 1270
BmsI GCATC 1 cut(s) 401
BmtI GCTAGC 1 cut(s) 872
BpiI GAAGAC 2 cut(s) 927, 1302
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 1 cut(s) 1633
Bpu10I CCTNAGC 1 cut(s) 849
BpuEI CTTGAG 3 cut(s) 170, 237, 324
BsaAI YACGTR 1 cut(s) 1663
BsaJI CCNNGG 4 cut(s) 62, 641, 1269, 1597
BsaXI ACNNNNNCTCC 2 cut(s) 1317, 1347
Bsc4I CCNNNNNNNGG 7 cut(s) 294, 371, 386, 680, 1121, 1387, 1454
Bse118I RCCGGY 1 cut(s) 1717
Bse1I ACTGG 5 cut(s) 380, 1115, 1412, 1650, 1741
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 1700
BseBI CCWGG 5 cut(s) 63, 489, 865, 896, 1270
BseDI CCNNGG 4 cut(s) 62, 641, 1269, 1597
BseLI CCNNNNNNNGG 7 cut(s) 294, 371, 386, 680, 1121, 1387, 1454
BseMI GCAATG 1 cut(s) 1700
BseMII CTCAG 2 cut(s) 87, 1305
BseNI ACTGG 5 cut(s) 380, 1115, 1412, 1650, 1741
BseSI GKGCMC 2 cut(s) 289, 1327
BseXI GCAGC 3 cut(s) 464, 598, 1403
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 1043
BshFI GGCC 5 cut(s) 77, 101, 287, 649, 673
BshNI GGYRCC 1 cut(s) 1324
BsiHKAI GWGCWC 1 cut(s) 860
BsiHKCI CYCGRG 2 cut(s) 900, 1671
BsiSI CCGG 2 cut(s) 1440, 1718
BslFI GGGAC 1 cut(s) 1286
BslI CCNNNNNNNGG 7 cut(s) 294, 371, 386, 680, 1121, 1387, 1454
BsmAI GTCTC 3 cut(s) 255, 786, 1718
BsmFI GGGAC 1 cut(s) 1286
BsmI GAATGC 1 cut(s) 1522
BsnI GGCC 5 cut(s) 77, 101, 287, 649, 673
BsoBI CYCGRG 2 cut(s) 900, 1671
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 289, 860, 1327
BspACI CCGC 3 cut(s) 234, 482, 762
BspANI GGCC 5 cut(s) 77, 101, 287, 649, 673
BspCNI CTCAG 2 cut(s) 88, 1306
BspHI TCATGA 1 cut(s) 1255
BspLI GGNNCC 5 cut(s) 287, 486, 702, 1326, 1739
BspOI GCTAGC 1 cut(s) 872
BspPI GGATC 4 cut(s) 590, 702, 961, 1200
BspT107I GGYRCC 1 cut(s) 1324
BsrDI GCAATG 1 cut(s) 1700
BsrFI RCCGGY 1 cut(s) 1717
BsrI ACTGG 5 cut(s) 380, 1115, 1412, 1650, 1741
BssAI RCCGGY 1 cut(s) 1717
BssECI CCNNGG 4 cut(s) 62, 641, 1269, 1597
Bst2UI CCWGG 5 cut(s) 63, 489, 865, 896, 1270
Bst4CI ACNGT 3 cut(s) 440, 593, 642
Bst6I CTCTTC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 1663
BstC8I GCNNGC 4 cut(s) 261, 830, 870, 1034
BstDEI CTNAG 6 cut(s) 96, 207, 690, 849, 1141, 1314
BstDSI CCRYGG 2 cut(s) 641, 1597
BstMAI GTCTC 3 cut(s) 255, 786, 1718
BstMWI GCNNNNNNNGC 2 cut(s) 479, 814
BstNI CCWGG 5 cut(s) 63, 489, 865, 896, 1270
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 5 cut(s) 61, 487, 863, 894, 1268
BstSLI GKGCMC 2 cut(s) 289, 1327
BstV1I GCAGC 3 cut(s) 464, 598, 1403
BstV2I GAAGAC 2 cut(s) 927, 1302
BstX2I RGATCY 3 cut(s) 953, 1200, 1684
BstXI CCANNNNNNTGG 2 cut(s) 642, 645
BstYI RGATCY 3 cut(s) 953, 1200, 1684
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 5 cut(s) 77, 101, 287, 649, 673
BtgI CCRYGG 2 cut(s) 641, 1597
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 5 cut(s) 589, 982, 1229, 1419, 1477
Cac8I GCNNGC 4 cut(s) 261, 830, 870, 1034
CciI TCATGA 1 cut(s) 1255
Cfr10I RCCGGY 1 cut(s) 1717
Cfr13I GGNCC 5 cut(s) 285, 286, 446, 518, 701
Csp6I GTAC 2 cut(s) 307, 466
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 6 cut(s) 310, 725, 741, 1150, 1247, 1256
CviQI GTAC 2 cut(s) 307, 466
DdeI CTNAG 6 cut(s) 96, 207, 690, 849, 1141, 1314
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 858
Eco24I GRGCYC 2 cut(s) 289, 860
Eco47I GGWCC 3 cut(s) 446, 518, 701
Eco53kI GAGCTC 1 cut(s) 858
Eco57I CTGAAG 2 cut(s) 921, 1020
Eco72I CACGTG 1 cut(s) 1663
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 900, 1671
EcoICRI GAGCTC 1 cut(s) 858
EcoO109I RGGNCCY 2 cut(s) 285, 701
EcoRI GAATTC 1 cut(s) 1238
EcoRII CCWGG 5 cut(s) 61, 487, 863, 894, 1268
EcoT38I GRGCYC 2 cut(s) 289, 860
FaeI CATG 6 cut(s) 313, 728, 744, 1153, 1250, 1259
FalI AAGNNNNNCTT 2 cut(s) 1150, 1182
FaqI GGGAC 1 cut(s) 1286
FatI CATG 6 cut(s) 309, 724, 740, 1149, 1246, 1255
FauNDI CATATG 1 cut(s) 777
FbaI TGATCA 1 cut(s) 1467
Fnu4HI GCNGC 3 cut(s) 453, 587, 1392
FriOI GRGCYC 2 cut(s) 289, 860
Fsp4HI GCNGC 3 cut(s) 453, 587, 1392
FspBI CTAG 3 cut(s) 869, 948, 1398
GluI GCNGC 3 cut(s) 453, 587, 1392
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 1 cut(s) 1633
HaeIII GGCC 5 cut(s) 77, 101, 287, 649, 673
HapII CCGG 2 cut(s) 1440, 1718
Hin1II CATG 6 cut(s) 313, 728, 744, 1153, 1250, 1259
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 4 cut(s) 180, 189, 799, 1637
HpaII CCGG 2 cut(s) 1440, 1718
HphI GGTGA 5 cut(s) 47, 223, 751, 1126, 1520
Hpy166II GTNNAC 1 cut(s) 1668
Hpy188I TCNGA 4 cut(s) 397, 522, 1197, 1315
Hpy8I GTNNAC 1 cut(s) 1668
HpyAV CCTTC 8 cut(s) 150, 364, 412, 660, 739, 986, 1176, 1431
HpyCH4III ACNGT 3 cut(s) 440, 593, 642
HpyCH4IV ACGT 2 cut(s) 1545, 1662
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 814
HpyF3I CTNAG 6 cut(s) 96, 207, 690, 849, 1141, 1314
HpySE526I ACGT 2 cut(s) 1545, 1662
Hsp92II CATG 6 cut(s) 313, 728, 744, 1153, 1250, 1259
Ksp22I TGATCA 1 cut(s) 1467
LmnI GCTCC 1 cut(s) 1406
Lsp1109I GCAGC 3 cut(s) 464, 598, 1403
LweI GCATC 1 cut(s) 401
MaeI CTAG 3 cut(s) 869, 948, 1398
MaeII ACGT 2 cut(s) 1545, 1662
MaeIII GTNAC 5 cut(s) 229, 382, 1301, 1508, 1537
MfeI CAATTG 2 cut(s) 513, 1283
MflI RGATCY 3 cut(s) 953, 1200, 1684
MhlI GDGCHC 3 cut(s) 289, 860, 1327
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 6 cut(s) 513, 916, 1057, 1238, 1283, 1552
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 2 cut(s) 174, 183
MmeI TCCRAC 3 cut(s) 545, 1596, 1665
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 6 cut(s) 302, 771, 966, 1119, 1341, 1350
MslI CAYNNNNRTG 2 cut(s) 640, 643
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 2 cut(s) 1440, 1718
MspR9I CCNGG 5 cut(s) 63, 489, 865, 896, 1270
MunI CAATTG 2 cut(s) 513, 1283
Mva1269I GAATGC 1 cut(s) 1522
MvaI CCWGG 5 cut(s) 63, 489, 865, 896, 1270
MwoI GCNNNNNNNGC 2 cut(s) 479, 814
NdeI CATATG 1 cut(s) 777
NheI GCTAGC 1 cut(s) 868
NlaIII CATG 6 cut(s) 313, 728, 744, 1153, 1250, 1259
NlaIV GGNNCC 5 cut(s) 287, 486, 702, 1326, 1739
NmuCI GTSAC 4 cut(s) 229, 382, 1508, 1537
NspI RCATGY 1 cut(s) 313
OliI CACNNNNGTG 2 cut(s) 640, 643
PaeR7I CTCGAG 2 cut(s) 900, 1671
PagI TCATGA 1 cut(s) 1255
PciI ACATGT 1 cut(s) 309
PctI GAATGC 1 cut(s) 1522
PfeI GAWTC 2 cut(s) 799, 1637
PflMI CCANNNNNTGG 1 cut(s) 1454
PkrI GCNGC 3 cut(s) 454, 588, 1393
PleI GAGTC 2 cut(s) 174, 183
PmaCI CACGTG 1 cut(s) 1663
PmlI CACGTG 1 cut(s) 1663
PpsI GAGTC 2 cut(s) 174, 183
Ppu21I YACGTR 1 cut(s) 1663
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 5 cut(s) 61, 487, 863, 894, 1268
PspCI CACGTG 1 cut(s) 1663
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 5 cut(s) 61, 487, 863, 894, 1268
PspN4I GGNNCC 5 cut(s) 287, 486, 702, 1326, 1739
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 5 cut(s) 285, 286, 446, 518, 701
PspPPI RGGWCCY 1 cut(s) 701
PsuI RGATCY 3 cut(s) 953, 1200, 1684
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 2 cut(s) 308, 467
RsaNI GTAC 2 cut(s) 307, 466
RseI CAYNNNNRTG 2 cut(s) 640, 643
SacI GAGCTC 1 cut(s) 860
SaqAI TTAA 6 cut(s) 302, 771, 966, 1119, 1341, 1350
SatI GCNGC 3 cut(s) 453, 587, 1392
Sau96I GGNCC 5 cut(s) 285, 286, 446, 518, 701
SchI GAGTC 2 cut(s) 174, 183
ScrFI CCNGG 5 cut(s) 63, 489, 865, 896, 1270
SduI GDGCHC 3 cut(s) 289, 860, 1327
SfaNI GCATC 1 cut(s) 401
Sfr274I CTCGAG 2 cut(s) 900, 1671
SinI GGWCC 3 cut(s) 446, 518, 701
SlaI CTCGAG 2 cut(s) 900, 1671
SmiMI CAYNNNNRTG 2 cut(s) 640, 643
SmlI CTYRAG 5 cut(s) 149, 252, 339, 900, 1671
SmoI CTYRAG 5 cut(s) 149, 252, 339, 900, 1671
Sse9I AATT 6 cut(s) 513, 916, 1057, 1238, 1283, 1552
SsiI CCGC 3 cut(s) 234, 482, 762
SspMI CTAG 3 cut(s) 869, 948, 1398
SstI GAGCTC 1 cut(s) 860
StyD4I CCNGG 5 cut(s) 61, 487, 863, 894, 1268
TaaI ACNGT 3 cut(s) 440, 593, 642
TaiI ACGT 2 cut(s) 1548, 1665
TaqI TCGA 3 cut(s) 281, 901, 1672
TasI AATT 6 cut(s) 513, 916, 1057, 1238, 1283, 1552
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 2 cut(s) 799, 1637
Tru1I TTAA 6 cut(s) 302, 771, 966, 1119, 1341, 1350
Tru9I TTAA 6 cut(s) 302, 771, 966, 1119, 1341, 1350
TscAI CASTG 5 cut(s) 596, 982, 1229, 1419, 1477
TseFI GTSAC 4 cut(s) 229, 382, 1508, 1537
TseI GCWGC 3 cut(s) 452, 586, 1391
Tsp45I GTSAC 4 cut(s) 229, 382, 1508, 1537
TspDTI ATGAA 5 cut(s) 33, 1037, 1041, 1244, 1602
TspGWI ACGGA 1 cut(s) 1586
TspRI CASTG 5 cut(s) 596, 982, 1229, 1419, 1477
Van91I CCANNNNNTGG 1 cut(s) 1454
VpaK11BI GGWCC 3 cut(s) 446, 518, 701
XapI RAATTY 3 cut(s) 1057, 1238, 1552
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XhoI CTCGAG 2 cut(s) 900, 1671
XspI CTAG 3 cut(s) 869, 948, 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.