Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013622.1

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Forward (+)

10739 .. 11266

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013622.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgccaaacttgcttgacaatgacaaacctgcaggcttccctctaccagttgctcaagctaagccagcagtcatacaacaggtgaaccagacaagcccttacaatgtttcaggactcggacttgcagatgatgggcagaaaatgatatccgagcttatgtcatcctatgataccaatactcagcacagcccgaatcctggcaacctcaatgctgtacaagaccacaaccaccagcaggcaaaatttcagtatccagtgaatgataacttctatggtcaagggatggttatggatcgtaacaatgtgcctgaaccaacaccgatgcccatgcttcaacaagttttcccatcgcctgaagttcagtttgatcagtgcaaggtatttgattctgcctttggtaacaatccgaatgatgttattcctgacttgaggtttggatctggatctcagtttagcttggcatcgccggactataatgttggtaactcactgctgaagcaagatgctgcatcattttggtacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

175

Amino Acids

19.28

Weight (kDa)

4.39

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AclWI	GGATC	3 cut(s)	300, 445, 451
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	375, 515
AfaI	GTAC	2 cut(s)	216, 521
AfiI	CCNNNNNNNGG	2 cut(s)	197, 235
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	59, 154, 456
AluI	AGCT	3 cut(s)	59, 154, 456
AlwI	GGATC	3 cut(s)	300, 445, 451
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsuHPI	GGTGA	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	3 cut(s)	125, 277, 355
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	261
BclI	TGATCA	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	507
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	4 cut(s)	312, 470, 493, 518
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	39, 448
BsaBI	GATNNNNATC	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 235
Bse1I	ACTGG	2 cut(s)	47, 254
Bse8I	GATNNNNATC	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	161, 288
BseJI	GATNNNNATC	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	197, 235
BseMII	CTCAG	2 cut(s)	194, 461
BseNI	ACTGG	2 cut(s)	47, 254
BseXI	GCAGC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	197, 235
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	292, 367, 437, 443
Bsp1720I	GCTNAGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	193, 460
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	3 cut(s)	300, 445, 451
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	47, 254
BssMI	GATC	4 cut(s)	292, 367, 437, 443
Bst2UI	CCWGG	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	34, 66, 237
BstDEI	CTNAG	3 cut(s)	60, 180, 447
BstF5I	GGATG	2 cut(s)	161, 288
BstKTI	GATC	4 cut(s)	295, 370, 440, 446
BstMBI	GATC	4 cut(s)	292, 367, 437, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 65
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	2 cut(s)	437, 443
BstYI	RGATCY	2 cut(s)	437, 443
BsuI	GTATCC	1 cut(s)	261
BtgZI	GCGATG	2 cut(s)	333, 447
BtsCI	GGATG	2 cut(s)	161, 288
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	261, 377, 488
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	34, 66, 237
Csp6I	GTAC	2 cut(s)	215, 520
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	7 cut(s)	36, 59, 64, 96, 154, 189, 456
CviKI_1	RGCY	7 cut(s)	36, 59, 64, 96, 154, 189, 456
CviQI	GTAC	2 cut(s)	215, 520
DdeI	CTNAG	3 cut(s)	60, 180, 447
DpnI	GATC	4 cut(s)	294, 369, 439, 445
DpnII	GATC	4 cut(s)	292, 367, 437, 443
Eco32I	GATATC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	375, 515
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	147
FaeI	CATG	1 cut(s)	331
FaiI	YATR	7 cut(s)	74, 158, 168, 273, 290, 329, 474
FatI	CATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	2 cut(s)	148, 295
Fsp4HI	GCNGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	3 cut(s)	114, 193, 386
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	119, 151, 408, 527
Hpy188III	TCNNGA	3 cut(s)	111, 422, 441
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	4 cut(s)	32, 125, 375, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 65
HpyF3I	CTNAG	3 cut(s)	60, 180, 447
Hsp92II	CATG	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	292, 367, 437, 443
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	4 cut(s)	312, 470, 493, 518
MaeIII	GTNAC	3 cut(s)	296, 398, 482
MalI	GATC	4 cut(s)	294, 369, 439, 445
MboI	GATC	4 cut(s)	292, 367, 437, 443
MflI	RGATCY	2 cut(s)	437, 443
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	51, 215, 423
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	10, 65
NdeII	GATC	4 cut(s)	292, 367, 437, 443
NlaIII	CATG	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	193, 386
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	437, 443
RsaI	GTAC	2 cut(s)	216, 521
RsaNI	GTAC	2 cut(s)	215, 520
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	4 cut(s)	292, 367, 437, 443
SbfI	CCTGCAGG	1 cut(s)	34
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	198
SdaI	CCTGCAGG	1 cut(s)	34
SetI	ASST	8 cut(s)	31, 61, 84, 156, 207, 381, 434, 458
SfaNI	GCATC	4 cut(s)	312, 470, 493, 518
SfcI	CTRYAG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	54, 427
SmoI	CTYRAG	2 cut(s)	54, 427
Sse8387I	CCTGCAGG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	196
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	193, 386
TscAI	CASTG	3 cut(s)	261, 377, 495
TseI	GCWGC	1 cut(s)	506
TspRI	CASTG	3 cut(s)	261, 377, 495
XapI	RAATTY	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.