Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Reverse (-)

10077783 .. 10080342

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGGATCTTTGAAGAAATGGGTTTCTGTGGTACTCTTGATTTCCTTTCGGCTCCTCCTGGGGAAGGAGAGGCAGCTCCAGAGCATGACCCAGAGGCAACAGTAGAGGAGGATAATAGTGATGAAGAAATGGATGTTGATGAGCTTGAGAGGAGGATGTGGAGAGATCGGATGCTATTGAAGCGACTTAAAGAACAAAGTAAGGGAAAGGAAGGTGTTGACAATGCAAGGCAGCGTCAATCACAGGAACAAGCTCGGAAGAAGATGTGGCGGGCACAAAAACACTTTCAGAGGAGAAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

102

Amino Acids

11.88

Weight (kDa)

5.29

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	14, 181
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	77, 145, 254
AluI	AGCT	3 cut(s)	77, 145, 254
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	74, 232
BaeGI	GKGCMC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	86, 244
BciT130I	CCWGG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	75, 233
BlsI	GCNGC	2 cut(s)	76, 234
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	139, 162, 177
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseRI	GAGGAG	3 cut(s)	45, 122, 166
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	86, 244
BslI	CCNNNNNNNGG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	6, 166
BspACI	CCGC	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	6, 166
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	139, 162, 177
BstKTI	GATC	2 cut(s)	9, 169
BstMBI	GATC	2 cut(s)	6, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	86, 244
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	139, 162, 177
Cac8I	GCNNGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	302
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	86, 303
CviJI	RGCY	4 cut(s)	53, 77, 145, 254
CviKI_1	RGCY	4 cut(s)	53, 77, 145, 254
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	2 cut(s)	8, 168
DpnII	GATC	2 cut(s)	6, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	89, 306
FaiI	YATR	2 cut(s)	87, 304
FatI	CATG	2 cut(s)	85, 302
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	75, 233
FokI	GGATG	3 cut(s)	146, 169, 184
Fsp4HI	GCNGC	2 cut(s)	75, 233
GluI	GCNGC	2 cut(s)	75, 233
GsuI	CTGGAG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	89, 306
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	171, 258, 291
Hpy188III	TCNNGA	3 cut(s)	38, 80, 303
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	59, 206
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	89, 306
Kzo9I	GATC	2 cut(s)	6, 166
LmnI	GCTCC	2 cut(s)	58, 82
LpnPI	CCDG	5 cut(s)	45, 72, 93, 105, 230
Lsp1109I	GCAGC	2 cut(s)	86, 244
LweI	GCATC	1 cut(s)	162
MalI	GATC	2 cut(s)	8, 168
MboI	GATC	2 cut(s)	6, 166
MboII	GAAGA	4 cut(s)	26, 137, 271, 274
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	64, 66, 88, 100, 103, 144, 147, 285
MseI	TTAA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	2 cut(s)	6, 166
NlaIII	CATG	2 cut(s)	89, 306
NlaIV	GGNNCC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	76, 234
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	75, 233
Sau3AI	GATC	2 cut(s)	6, 166
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	4 cut(s)	79, 147, 217, 256
SfaNI	GCATC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	2 cut(s)	74, 232
TspDTI	ATGAA	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.