Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Forward (+)

3585927 .. 3586351

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGATCTTTGAGGAACTGGGGTTCAGTGGCGATCTTGACTTTCTTTCGGCTGCCCTTGAGGAAGATGAGGCAGCCCCAGAGCATGATCCAGAGGCAACAGAGGAGGATAGCAGCAATGAAGAATTGGGGGTTGATGAGCTTGAGAAGAGGGTGTGGAAATATAGAATGCAACTGAAGCAGCCTAAGGAACAAAATAAAGGAACAGAAGGAGCTGACAATGCAAGGCAGTGCCAACCAAAGGAACAATCTCACAGGAAGAAGATGTCACGGGCACAAGATGCAATCCTGAAATATATGTTAAGAATGATGGAAGTTTGCAAAGCTGAGGGTTTTGTTTATGGGATTGTCCCCAAAAAAGGGAAAAGTAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

126

Amino Acids

14.33

Weight (kDa)

4.98

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	46 - 123	7.3e-25	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	241, 359, 360
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	142, 215, 326
AluI	AGCT	3 cut(s)	142, 215, 326
AlwI	GGATC	1 cut(s)	83
ApeKI	GCWGC	4 cut(s)	53, 74, 114, 181
AxyI	CCTNAGG	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	40, 86, 126, 193
BccI	CCATC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	54, 75, 115, 182
BlsI	GCNGC	4 cut(s)	55, 76, 116, 183
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	80, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 359, 360
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	241, 359, 360
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	40, 86, 126, 193
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	241, 359, 360
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	6, 34, 88
BspCNI	CTCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	6, 34, 88
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	186, 327
BstKTI	GATC	3 cut(s)	9, 37, 91
BstMBI	GATC	3 cut(s)	6, 34, 88
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 221, 281
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	40, 86, 126, 193
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	34, 236
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	53, 77, 142, 184, 215, 326
CviKI_1	RGCY	6 cut(s)	53, 77, 142, 184, 215, 326
DdeI	CTNAG	2 cut(s)	186, 327
DpnI	GATC	3 cut(s)	8, 36, 90
DpnII	GATC	3 cut(s)	6, 34, 88
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	87, 165, 297, 299, 342
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	54, 75, 115, 182
Fsp4HI	GCNGC	4 cut(s)	54, 75, 115, 182
GluI	GCNGC	4 cut(s)	54, 75, 115, 182
Hin1II	CATG	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	38, 92, 289
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	172, 224, 284, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 221, 281
HpyF3I	CTNAG	2 cut(s)	186, 327
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	6, 34, 88
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	5 cut(s)	5, 93, 105, 241, 302
Lsp1109I	GCAGC	4 cut(s)	40, 86, 126, 193
LweI	GCATC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	8, 36, 90
MboI	GATC	3 cut(s)	6, 34, 88
MboII	GAAGA	5 cut(s)	77, 134, 160, 271, 274
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	8 cut(s)	7, 55, 64, 88, 97, 100, 144, 322
MseI	TTAA	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	178, 221, 281
NdeII	GATC	3 cut(s)	6, 34, 88
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	55, 76, 116, 183
PsuI	RGATCY	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	4 cut(s)	54, 75, 115, 182
Sau3AI	GATC	3 cut(s)	6, 34, 88
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	3 cut(s)	144, 217, 328
SfaNI	GCATC	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	59, 143
SmoI	CTYRAG	2 cut(s)	59, 143
Sse9I	AATT	1 cut(s)	125
TasI	AATT	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	34, 236
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	4 cut(s)	53, 74, 114, 181
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	34, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.