Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Reverse (-)

20831901 .. 20832950

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAGCACTGCAATCCTCCCCAAAGACGTTTCCCATTGGAGAAGGGTGTTGCCCCACCTTGGTGGCCTACTGGTAATGAGGAATGGTGGCCTCAACTAAATCTGCCCAAGGATCAGGGTCCTCCCCCATACAAGAAGCCTCATGATCTGAAGAAGGCTTGGAAGGTTGGTGTTCTCACGGCTGTGATAAAGCACATGTCACCAGATGTTGCCAAGATCCGCAAGCTTGTTTGTCAGTCTAAATGTTTGCAGGACAAAATGACTGCTAAGGAGAGTGCCACTTGGCTAGCCATTTTAAACCAGGAGGAAGCTTTGGCCCGGAGGCTATATCCTGATAGATGTCCACCTCCATTTGCTGGTGGGAATGACTCTTTAGCAATCAGTGGAACTAGTGATTATGATGTCGAAGGGGTTGATGATGACGAAAATGTTGAAATAGAGGATTGCAAACCTCTTGTTAATCACTTCAACATTGGAGCCACTGGACAAAGAGAGAGGCTGGGACCTCAGATTAAGAGAGAGCTTATTGAGATCAACTCCGATTTTGGTCAAAAGAGGAAGCAGCTGGCTGAAGAGCCACAAATGATGTTAAATCAGAAGGTTTACACCTGTGAATATCTGCAGTGCCCGTATCATGATTATCGCCTAGGCTTTCTTGACATAACTGCAAGAAACAATCATCAGTTGAATTGTCCACACCGGAGTAATTCTTCACAAGTGCTTGGAATGTCAAGCTTTCAGCTTCACAATGAGAAACCTGTGAGCTTCTCTCTACCCATTGCTCAACAACCTACACCAGCAATTCAACAACCAGTGAACCAGTCAAGTATGTTCGATGATTCGGGACTTGGAATTCAACAACCATTGAACCAGTCAGGTAGGTTTGATGCTTCAGGACTTGGAATTGCTGAGGATGGGCAGAAAATGATATCGGAGCTTATGTCATTCTATGATAGTAATATTCAGCAGAACAATAACTGCAATCCTGGAAACCTCAATGTTATAGATGATCGATCAATCAGCAGCAGGCGAACTATCAATTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

350

Amino Acids

39.44

Weight (kDa)

6.09

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	1 - 103	1.6e-53	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	120, 211
AcsI	RAATTY	1 cut(s)	852
AcuI	CTGAAG	3 cut(s)	170, 591, 876
AfiI	CCNNNNNNNGG	2 cut(s)	60, 356
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	6 cut(s)	434, 469, 688, 806, 857, 868
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	300, 985
AleI	CACNNNNGTG	2 cut(s)	61, 182
AluBI	AGCT	8 cut(s)	226, 311, 523, 565, 735, 742, 765, 937
AluI	AGCT	8 cut(s)	226, 311, 523, 565, 735, 742, 765, 937
AlwI	GGATC	2 cut(s)	120, 211
AoxI	GGCC	3 cut(s)	65, 89, 315
ApeKI	GCWGC	3 cut(s)	4, 562, 1023
ApoI	RAATTY	1 cut(s)	852
AspA2I	CCTAGG	1 cut(s)	646
AspS9I	GGNCC	3 cut(s)	119, 316, 503
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	192
AsuNHI	GCTAGC	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	119, 503
AvrII	CCTAGG	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	629
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	16, 574, 1035
BccI	CCATC	1 cut(s)	908
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	302, 987
BcnI	CCSGG	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	3 cut(s)	287, 390, 647
BfmI	CTRYAG	1 cut(s)	620
BisI	GCNGC	3 cut(s)	5, 563, 1024
BlnI	CCTAGG	1 cut(s)	646
BlsI	GCNGC	3 cut(s)	6, 564, 1025
Bme1390I	CCNGG	3 cut(s)	302, 319, 987
Bme18I	GGWCC	2 cut(s)	119, 503
BmgT120I	GGNCC	3 cut(s)	119, 316, 503
BmiI	GGNNCC	3 cut(s)	120, 478, 504
BmrFI	CCNGG	3 cut(s)	302, 319, 987
BmsI	GCATC	1 cut(s)	877
BmtI	GCTAGC	1 cut(s)	290
BplI	GAGNNNNNCTC	4 cut(s)	521, 553, 754, 786
Bpu10I	CCTNAGC	2 cut(s)	267, 909
BpuMI	CCSGG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	1012
BsaJI	CCNNGG	3 cut(s)	59, 108, 646
BsaWI	WCCGGW	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	926, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 356
Bse1I	ACTGG	6 cut(s)	76, 487, 812, 820, 871, 1045
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	302, 987
BseCI	ATCGAT	1 cut(s)	1012
BseDI	CCNNGG	3 cut(s)	59, 108, 646
BseGI	GGATG	1 cut(s)	919
BseLI	CCNNNNNNNGG	2 cut(s)	60, 356
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	521, 900
BseNI	ACTGG	6 cut(s)	76, 487, 812, 820, 871, 1045
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	3 cut(s)	16, 574, 1035
BseYI	CCCAGC	1 cut(s)	499
BshFI	GGCC	3 cut(s)	67, 91, 317
BshVI	ATCGAT	1 cut(s)	1012
BsiSI	CCGG	2 cut(s)	319, 700
BslFI	GGGAC	2 cut(s)	516, 858
BslI	CCNNNNNNNGG	2 cut(s)	60, 356
BsmFI	GGGAC	2 cut(s)	516, 858
BsnI	GGCC	3 cut(s)	67, 91, 317
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	67, 91, 317
BspCNI	CTCAG	2 cut(s)	520, 901
BspDI	ATCGAT	1 cut(s)	1012
BspHI	TCATGA	2 cut(s)	142, 634
BspLI	GGNNCC	3 cut(s)	120, 478, 504
BspMAI	CTGCAG	1 cut(s)	624
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	120, 211
BspQI	GCTCTTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	6 cut(s)	76, 487, 812, 820, 871, 1045
BssECI	CCNNGG	3 cut(s)	59, 108, 646
BssMI	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
BssT1I	CCWWGG	3 cut(s)	59, 108, 646
Bst2UI	CCWGG	2 cut(s)	302, 987
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	224, 288, 567, 1028
BstDEI	CTNAG	3 cut(s)	267, 507, 909
BstF5I	GGATG	1 cut(s)	919
BstKTI	GATC	6 cut(s)	115, 148, 219, 534, 1012, 1016
BstMBI	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
BstNI	CCWGG	2 cut(s)	302, 987
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	3 cut(s)	300, 317, 985
BstSFI	CTRYAG	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	3 cut(s)	16, 574, 1035
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	1012
BsuRI	GGCC	3 cut(s)	67, 91, 317
BsuTUI	ATCGAT	1 cut(s)	1012
BtsCI	GGATG	1 cut(s)	919
BtsI	GCAGTG	2 cut(s)	7, 629
BtsIMutI	CAGTG	5 cut(s)	7, 388, 480, 629, 819
Cac8I	GCNNGC	4 cut(s)	224, 288, 567, 1028
CciI	TCATGA	2 cut(s)	142, 634
Cfr13I	GGNCC	3 cut(s)	119, 316, 503
ClaI	ATCGAT	1 cut(s)	1012
CviAII	CATG	3 cut(s)	143, 196, 635
DdeI	CTNAG	3 cut(s)	267, 507, 909
DpnI	GATC	6 cut(s)	114, 147, 218, 533, 1011, 1015
DpnII	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	3 cut(s)	59, 108, 646
Eco32I	GATATC	1 cut(s)	930
Eco47I	GGWCC	2 cut(s)	119, 503
Eco57I	CTGAAG	3 cut(s)	170, 591, 876
EcoO109I	RGGNCCY	2 cut(s)	119, 503
EcoRI	GAATTC	1 cut(s)	852
EcoRII	CCWGG	2 cut(s)	300, 985
EcoRV	GATATC	1 cut(s)	930
EcoT14I	CCWWGG	3 cut(s)	59, 108, 646
ErhI	CCWWGG	3 cut(s)	59, 108, 646
FaeI	CATG	3 cut(s)	146, 199, 638
FaqI	GGGAC	2 cut(s)	516, 858
FatI	CATG	3 cut(s)	142, 195, 634
Fnu4HI	GCNGC	3 cut(s)	5, 563, 1024
FokI	GGATG	1 cut(s)	926
Fsp4HI	GCNGC	3 cut(s)	5, 563, 1024
FspBI	CTAG	3 cut(s)	287, 390, 647
GluI	GCNGC	3 cut(s)	5, 563, 1024
GsaI	CCCAGC	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	67, 91, 317
HapII	CCGG	2 cut(s)	319, 700
Hin1II	CATG	3 cut(s)	146, 199, 638
HindIII	AAGCTT	3 cut(s)	224, 309, 733
HinfI	GANTC	2 cut(s)	368, 839
HpaII	CCGG	2 cut(s)	319, 700
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	4 cut(s)	344, 604, 695, 817
Hpy188I	TCNGA	5 cut(s)	150, 510, 541, 597, 934
Hpy188III	TCNNGA	6 cut(s)	143, 332, 635, 656, 843, 894
Hpy8I	GTNNAC	4 cut(s)	344, 604, 695, 817
HpyAV	CCTTC	5 cut(s)	37, 148, 157, 401, 592
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	7 cut(s)	4, 12, 250, 447, 622, 668, 981
HpyF3I	CTNAG	3 cut(s)	267, 507, 909
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	146, 199, 638
Kzo9I	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	2 cut(s)	476, 934
Lsp1109I	GCAGC	3 cut(s)	16, 574, 1035
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	3 cut(s)	287, 390, 647
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	6 cut(s)	114, 147, 218, 533, 1011, 1015
MboI	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
MboII	GAAGA	3 cut(s)	163, 584, 702
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	6 cut(s)	688, 706, 801, 852, 903, 1039
MlyI	GAGTC	1 cut(s)	362
MseI	TTAA	4 cut(s)	296, 459, 513, 590
MslI	CAYNNNNRTG	2 cut(s)	61, 182
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	2 cut(s)	319, 700
MspR9I	CCNGG	3 cut(s)	302, 319, 987
MvaI	CCWGG	2 cut(s)	302, 987
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	146, 199, 638
NlaIV	GGNNCC	3 cut(s)	120, 478, 504
NmuCI	GTSAC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	2 cut(s)	61, 182
PagI	TCATGA	2 cut(s)	142, 634
PciI	ACATGT	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	839
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	985
PkrI	GCNGC	3 cut(s)	6, 564, 1025
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PpuMI	RGGWCCY	2 cut(s)	119, 503
PscI	ACATGT	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	119, 503
Psp6I	CCWGG	2 cut(s)	300, 985
PspFI	CCCAGC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	300, 985
PspN4I	GGNNCC	3 cut(s)	120, 478, 504
PspPI	GGNCC	3 cut(s)	119, 316, 503
PspPPI	RGGWCCY	2 cut(s)	119, 503
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	61, 182
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	296, 459, 513, 590
SatI	GCNGC	3 cut(s)	5, 563, 1024
Sau3AI	GATC	6 cut(s)	112, 145, 216, 531, 1009, 1013
Sau96I	GGNCC	3 cut(s)	119, 316, 503
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	302, 319, 987
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	119, 503
SmiMI	CAYNNNNRTG	2 cut(s)	61, 182
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	6 cut(s)	688, 706, 801, 852, 903, 1039
SsiI	CCGC	1 cut(s)	220
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	3 cut(s)	287, 390, 647
StyD4I	CCNGG	3 cut(s)	300, 317, 985
StyI	CCWWGG	3 cut(s)	59, 108, 646
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	405, 834, 1012
TasI	AATT	6 cut(s)	688, 706, 801, 852, 903, 1039
TfiI	GAWTC	1 cut(s)	839
Tru1I	TTAA	4 cut(s)	296, 459, 513, 590
Tru9I	TTAA	4 cut(s)	296, 459, 513, 590
TscAI	CASTG	5 cut(s)	14, 388, 487, 629, 819
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	4, 562, 1023
Tsp45I	GTSAC	1 cut(s)	198
TspRI	CASTG	5 cut(s)	14, 388, 487, 629, 819
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	119, 503
XapI	RAATTY	1 cut(s)	852
XceI	RCATGY	1 cut(s)	199
XmaJI	CCTAGG	1 cut(s)	646
XspI	CTAG	3 cut(s)	287, 390, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.