Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Reverse (-)

14943541 .. 14944253

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATTTCTGTGATTCCCTTCCCCTCCCAGCTTGCAAAGAAAGGAGAACAGTTTATAGACCTTCCTTATGCTGTCAAAGGGATGGAAGTGTCTTTTAGTGGAATTCTGAGCTACATTGAAGCCACTGCTGTGGAGAAACTAAAAAATGACGAGTGCACCCCTGCAGACATGTGCCACTCACTTCAGGAAAATGTGTTCGCAATGCTTGTTGAGATAACAGAACGTGCAATGTCACATTGTGACAAGAGAGATGTACTGATTGTTGGTGGTGTGGGTTGCAATGAGCGGCTGCAAGAGATGATGAAAATCATGTGTGCTGAACGGGGTGAAAGATTGTTTGCAACTGATGATAGGTATTGTATTGATAATGGGGCAATGATTGCTTATACTGGTCTTCTTGCTTTTGCTCACGGAACATCAACCCCATTGGCGGAATGGACTTTCACGAAACGGTTCCGGACTGATGAAGTGGAAGCAATCTGGAGAGTAAAAGAGGAGTCAGCAAAAGTTAAAGGGTATGGGAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

176

Amino Acids

19.68

Weight (kDa)

5.16

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	9 - 129	1.6e-27	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	2 cut(s)	286, 431
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	119
AleI	CACNNNNGTG	1 cut(s)	128
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	31, 111, 528
AluI	AGCT	3 cut(s)	31, 111, 528
Alw21I	GWGCWC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	456
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	287, 290
BlsI	GCNGC	2 cut(s)	288, 291
BmiI	GGNNCC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	4 cut(s)	207, 234, 286, 381
Bse8I	GATNNNNATC	1 cut(s)	305
BseAI	TCCGGA	1 cut(s)	456
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	4 cut(s)	207, 234, 286, 381
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp13I	TCCGGA	1 cut(s)	456
BspACI	CCGC	2 cut(s)	286, 431
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	4 cut(s)	207, 234, 286, 381
BsrI	ACTGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	51, 453
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	169, 310
CviJI	RGCY	5 cut(s)	31, 111, 122, 289, 528
CviKI_1	RGCY	5 cut(s)	31, 111, 122, 289, 528
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	107
DraIII	CACNNNGTG	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	102
FaeI	CATG	2 cut(s)	172, 313
FaiI	YATR	6 cut(s)	56, 69, 170, 311, 387, 519
FatI	CATG	2 cut(s)	168, 309
Fnu4HI	GCNGC	2 cut(s)	287, 290
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	287, 290
GluI	GCNGC	2 cut(s)	287, 290
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	502
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	2 cut(s)	172, 313
HinfI	GANTC	2 cut(s)	13, 497
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	4 cut(s)	185, 445, 457, 481
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	28, 71
HpyCH4III	ACNGT	2 cut(s)	51, 453
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	35, 156, 164, 227, 279, 292, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	172, 313
Kpn2I	TCCGGA	1 cut(s)	456
LpnPI	CCDG	6 cut(s)	41, 170, 174, 375, 466, 470
Lsp1109I	GCAGC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	231, 239
MbiI	CCGCTC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	2 cut(s)	34, 487
MroI	TCCGGA	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	172, 313
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	231, 239
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	128
PciI	ACATGT	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	288, 291
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	2 cut(s)	287, 290
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	6 cut(s)	33, 63, 113, 226, 356, 530
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	2 cut(s)	286, 431
TaaI	ACNGT	2 cut(s)	51, 453
TaiI	ACGT	1 cut(s)	226
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	231, 239
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	2 cut(s)	231, 239
TspDTI	ATGAA	2 cut(s)	317, 480
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.