Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001963

Physical Location & Seq

Genomic Coordinates Reverse (-)

20936876 .. 20937727

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGGATCTTTGAAGAAATGGGTTTCTGTGGTAATCTTGACTTTCTTTCGGCTCCATCTGGGGAAGGCGAAGCAGCTCCAGAGCATGAACCCGAGGCAACTGGGGAGGAGGATTATAGTGATGAAGAAATGGATGTTGATGAGCTGGAGAGGAGGATGTGGAGAGACCGAATGCTATTGAAGAAGCTGAAGGAACAAACTAAGGGAAAGGAAAGAGTTGACAATGCGAGACAGCGTCAATCACAGGAACAAGCTCGGAGGAAGAAGATGTCACGGGCACAAGATGGGATCCTGAAATATATGCTGAAAATGATGGAAGTTTGCAAAGCTCAGGGTTTTGTTTATGGAATTATCCCAGAAAAAGGAAAACCAGTGAGTGGTGCCTCAGACAATCTGCGAGCATGGTGGAAGGAAAAAGTAAGATTTGATCGTAATGGCCCGGCTGCAATTTCTAAGTATCAGGCAGATCATTCAATCCCTGGGAAGAATGAAGACTGCAGTGTAGTGGCATCCACTCCTCACACTTTACAGGAGCTGCAAGACACCACGCTTGGTTCACTTTTGTCGGCTTTGATGCAGCACTGCGATCCACCCCAAAGACGTTTCCCATTGGAGAAAGGTGTTGCCCCACCTTGGTGGCCTACCGGTAATGAGGATTGGTGGCCTCAATTAAATCTGCCCAAGGATCATGGTCCTCCCCCATACAAGAAGCCTCATGATCTGAAAAAGGCTTGGAAGGTTGGTGTCCTCACAGCTGTGATAAAGCATATGTCACCAGATATTGCCAATATAAGGATCGATCCGCAAGCTTGTTCGTCAGTCCAAGTGTTTGCAAGACAAAATGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

284

Amino Acids

32.15

Weight (kDa)

6.41

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	47 - 266	1.7e-119	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27050 AT3G20770
fragaria_vesca	FvH4_1g28720 FvH4_1g28720 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940 FvH4_7g04940
malus_domestica	MD02G1266200.v1.1 MD02G1266300.v1.1 MD07G1053500.v1.1 MD07G1053800.v1.1 MD08G1245800.v1.1 MD15G1441000.v1.1
prunus_persica	Prupe.2G058400_v2.0.a1 Prupe.2G058500_v2.0.a1 Prupe.2G070300_v2.0.a1
pyrus_communis	pycom02g22750 pycom02g22760 pycom07g04140 pycom07g04160 pycom08g21330 pycom15g38880
rosa_chinensis	RchiOBHm_Chr1g0331011 RchiOBHm_Chr5g0049961
rosa_laevigata	RLG00000029759 RLG00000034672
rosa_multiflora	Rmu_sc0000333.1_g000038 Rmu_sc0013622.1_g000002 Rmu_sc0013622.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031290 Rroxscaffold_4G00319550
rosa_rugosa	Rorug01G0091600 Rorug05G0255200
rosa_samantha	Rh1AG113300 Rh1BG087200 Rh1CG110200 Rh1DG118900 Rh5AG329100 Rh5BG339600 Rh5CG365600 Rh5DG352200
rosa_wichuraiana	Rw1G009240 Rw5G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	7 cut(s)	14, 283, 296, 581, 693, 794, 803
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	362, 377, 633, 792
AgeI	ACCGGT	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	14, 181, 474
AjnI	CCWGG	1 cut(s)	478
AleI	CACNNNNGTG	2 cut(s)	634, 755
AluBI	AGCT	8 cut(s)	77, 145, 187, 254, 329, 535, 755, 809
AluI	AGCT	8 cut(s)	77, 145, 187, 254, 329, 535, 755, 809
Alw26I	GTCTC	2 cut(s)	159, 223
AlwI	GGATC	7 cut(s)	14, 283, 296, 581, 693, 794, 803
AlwNI	CAGNNNCTG	1 cut(s)	535
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	3 cut(s)	436, 638, 662
ApeKI	GCWGC	4 cut(s)	74, 443, 535, 577
AsiGI	ACCGGT	1 cut(s)	644
AspS9I	GGNCC	2 cut(s)	437, 692
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	765
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	4 cut(s)	86, 430, 522, 589
BccI	CCATC	3 cut(s)	64, 278, 307
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	159, 223
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	4 cut(s)	75, 444, 536, 578
BlsI	GCNGC	4 cut(s)	76, 445, 537, 579
Bme1390I	CCNGG	2 cut(s)	440, 480
Bme18I	GGWCC	1 cut(s)	692
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	437, 692
BmiI	GGNNCC	3 cut(s)	54, 290, 382
BmrFI	CCNGG	2 cut(s)	440, 480
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	518, 564
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	63, 167
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	93, 478, 479, 632, 681
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 377, 633, 792
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	2 cut(s)	106, 371
BseBI	CCWGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	5 cut(s)	93, 478, 479, 632, 681
BseGI	GGATG	3 cut(s)	139, 162, 509
BseLI	CCNNNNNNNGG	4 cut(s)	362, 377, 633, 792
BseMII	CTCAG	2 cut(s)	344, 399
BseNI	ACTGG	2 cut(s)	106, 371
BseRI	GAGGAG	3 cut(s)	122, 166, 507
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	4 cut(s)	86, 430, 522, 589
BshFI	GGCC	3 cut(s)	438, 640, 664
BshNI	GGYRCC	1 cut(s)	380
BshTI	ACCGGT	1 cut(s)	644
BshVI	ATCGAT	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	440, 645
BslI	CCNNNNNNNGG	4 cut(s)	362, 377, 633, 792
BsmAI	GTCTC	2 cut(s)	159, 223
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	438, 640, 664
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
BspACI	CCGC	1 cut(s)	803
BspANI	GGCC	3 cut(s)	438, 640, 664
BspCNI	CTCAG	2 cut(s)	343, 398
BspDI	ATCGAT	1 cut(s)	798
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	54, 290, 382
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	7 cut(s)	14, 283, 296, 581, 693, 794, 803
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	106, 371
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	5 cut(s)	93, 478, 479, 632, 681
BssMI	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
BssT1I	CCWWGG	2 cut(s)	632, 681
Bst2UI	CCWGG	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	399, 807
BstDEI	CTNAG	4 cut(s)	201, 330, 385, 453
BstF5I	GGATG	3 cut(s)	139, 162, 509
BstKTI	GATC	9 cut(s)	9, 291, 430, 469, 589, 688, 721, 798, 802
BstMAI	GTCTC	2 cut(s)	159, 223
BstMBI	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	438, 478
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	86, 430, 522, 589
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	2 cut(s)	6, 288
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	2 cut(s)	6, 288
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	438, 640, 664
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	139, 162, 509
BtsI	GCAGTG	2 cut(s)	505, 580
BtsIMutI	CAGTG	3 cut(s)	378, 505, 580
Cac8I	GCNNGC	2 cut(s)	399, 807
CaiI	CAGNNNCTG	1 cut(s)	535
CciI	TCATGA	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	437, 692
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	224
CspAI	ACCGGT	1 cut(s)	644
CviAII	CATG	4 cut(s)	86, 402, 689, 716
DdeI	CTNAG	4 cut(s)	201, 330, 385, 453
DpnI	GATC	9 cut(s)	8, 290, 429, 468, 588, 687, 720, 797, 801
DpnII	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
Eco130I	CCWWGG	2 cut(s)	632, 681
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	632, 681
ErhI	CCWWGG	2 cut(s)	632, 681
FaeI	CATG	4 cut(s)	89, 405, 692, 719
FatI	CATG	4 cut(s)	85, 401, 688, 715
FauNDI	CATATG	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	75, 444, 536, 578
FokI	GGATG	3 cut(s)	146, 169, 496
Fsp4HI	GCNGC	4 cut(s)	75, 444, 536, 578
GluI	GCNGC	4 cut(s)	75, 444, 536, 578
GsuI	CTGGAG	2 cut(s)	63, 167
HaeIII	GGCC	3 cut(s)	438, 640, 664
HapII	CCGG	2 cut(s)	440, 645
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	89, 405, 692, 719
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	807
HpaII	CCGG	2 cut(s)	440, 645
HphI	GGTGA	1 cut(s)	765
Hpy166II	GTNNAC	2 cut(s)	220, 557
Hpy188I	TCNGA	3 cut(s)	258, 388, 723
Hpy188III	TCNNGA	4 cut(s)	38, 80, 292, 716
Hpy8I	GTNNAC	2 cut(s)	220, 557
HpyAV	CCTTC	4 cut(s)	59, 184, 403, 730
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	6 cut(s)	324, 446, 498, 538, 577, 833
HpyF3I	CTNAG	4 cut(s)	201, 330, 385, 453
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	4 cut(s)	89, 405, 692, 719
Kzo9I	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
LmnI	GCTCC	3 cut(s)	58, 82, 532
Lsp1109I	GCAGC	4 cut(s)	86, 430, 522, 589
LweI	GCATC	2 cut(s)	518, 564
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	270, 771
MalI	GATC	9 cut(s)	8, 290, 429, 468, 588, 687, 720, 797, 801
MboI	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
MboII	GAAGA	7 cut(s)	26, 137, 193, 274, 277, 496, 503
MflI	RGATCY	2 cut(s)	6, 288
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	3 cut(s)	348, 447, 668
MseI	TTAA	1 cut(s)	671
MslI	CAYNNNNRTG	2 cut(s)	634, 755
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	2 cut(s)	440, 645
MspR9I	CCNGG	2 cut(s)	440, 480
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	480
NciI	CCSGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	768
NdeII	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
NlaIII	CATG	4 cut(s)	89, 405, 692, 719
NlaIV	GGNNCC	3 cut(s)	54, 290, 382
NmuCI	GTSAC	2 cut(s)	270, 771
OliI	CACNNNNGTG	2 cut(s)	634, 755
PagI	TCATGA	1 cut(s)	715
PasI	CCCWGGG	1 cut(s)	479
PctI	GAATGC	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	76, 445, 537, 579
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	54, 290, 382
PspPI	GGNCC	2 cut(s)	437, 692
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	6, 288
PsyI	GACNNNGTC	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	755
RseI	CAYNNNNRTG	2 cut(s)	634, 755
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	4 cut(s)	75, 444, 536, 578
Sau3AI	GATC	9 cut(s)	6, 288, 427, 466, 586, 685, 718, 795, 799
Sau96I	GGNCC	2 cut(s)	437, 692
ScrFI	CCNGG	2 cut(s)	440, 480
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	2 cut(s)	518, 564
SfcI	CTRYAG	1 cut(s)	496
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	2 cut(s)	634, 755
Sse9I	AATT	3 cut(s)	348, 447, 668
SsiI	CCGC	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	438, 478
StyI	CCWWGG	2 cut(s)	632, 681
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	798
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	348, 447, 668
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	3 cut(s)	378, 505, 587
TseFI	GTSAC	2 cut(s)	270, 771
TseI	GCWGC	4 cut(s)	74, 443, 535, 577
Tsp45I	GTSAC	2 cut(s)	270, 771
TspDTI	ATGAA	3 cut(s)	102, 138, 504
TspRI	CASTG	3 cut(s)	378, 505, 587
Tth111I	GACNNNGTC	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.