FvH4_1g29683

8-hydroxy-dADP phosphatase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
22987751 .. 22988116
366 bp
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UTR
Exon/CDS
Intron
FvH4_1g29683.t1

Sequence Viewer

Length: 366 bp
ATGGTGGATGCTACAGTTGGTGGAAGCTTGATGGGACAGCCAGTAGAAGCAGCAATTCAAGCTTTTGAGACTATAAGTGAGAATTCGCAACAGTATGCGCCTTATGCATCAGGTTTTAAAAGAGGCCTTTATGAGGTTAGTGCAAATACCAAGCTCGAAGAGCAAGTTGCAGCTTTGGCAAGACAGATGAAAAGCCTTACTCCTCTATTAAACAAGGGTGCAAAGGAGACATGTGCATTATGTTCAAGTTTTTTACATACCACGGAAGCTTGTCCAGAACTTCATGGTGATGAGGAAGTCAACATGGTGAATAACTATGGAAGGTCAATGAATAATTTCTCTGGCAATAACTATAATTCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.05

Weight (kDa)

4.9

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 59, 246
AluBI AGCT 5 cut(s) 27, 62, 154, 173, 269
AluI AGCT 5 cut(s) 27, 62, 154, 173, 269
Alw26I GTCTC 2 cut(s) 62, 221
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 50, 170
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 299, 319
BbvI GCAGC 2 cut(s) 62, 182
BccI CCATC 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 62, 221
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 51, 171
BlsI GCNGC 2 cut(s) 52, 172
BmsI GCATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 62, 182
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 62, 221
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 126
BspANI GGCC 1 cut(s) 126
BspQI GCTCTTC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 16, 93
Bst6I CTCTTC 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 62, 221
BstMWI GCNNNNNNNGC 4 cut(s) 59, 104, 160, 176
BstNSI RCATGY 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 62, 182
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 13
CfoI GCGC 1 cut(s) 100
CviAII CATG 3 cut(s) 231, 284, 304
CviJI RGCY 8 cut(s) 27, 40, 62, 126, 154, 173, 195, 269
CviKI_1 RGCY 8 cut(s) 27, 40, 62, 126, 154, 173, 195, 269
DraI TTTAAA 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 3 cut(s) 234, 287, 307
FaqI GGGAC 1 cut(s) 48
FatI CATG 3 cut(s) 230, 283, 303
Fnu4HI GCNGC 2 cut(s) 51, 171
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 51, 171
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 51, 171
HaeIII GGCC 1 cut(s) 126
HhaI GCGC 1 cut(s) 100
Hin1II CATG 3 cut(s) 234, 287, 307
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 3 cut(s) 25, 60, 267
HphI GGTGA 2 cut(s) 299, 319
Hpy166II GTNNAC 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 2 cut(s) 16, 93
HpyCH4V TGCA 5 cut(s) 107, 143, 170, 221, 236
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 104, 160, 176
Hsp92II CATG 3 cut(s) 234, 287, 307
HspAI GCGC 1 cut(s) 98
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 54, 96, 288, 327, 345
Lsp1109I GCAGC 2 cut(s) 62, 182
LweI GCATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 170
MluCI AATT 4 cut(s) 54, 82, 334, 355
MnlI CCTC 4 cut(s) 116, 127, 213, 286
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 2 cut(s) 117, 209
MslI CAYNNNNRTG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 59, 104, 160, 176
NlaIII CATG 3 cut(s) 234, 287, 307
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 234
PceI AGGCCT 1 cut(s) 126
PciI ACATGT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 52, 172
PscI ACATGT 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 117, 209
SatI GCNGC 2 cut(s) 51, 171
SetI ASST 9 cut(s) 29, 64, 115, 138, 156, 175, 271, 326, 364
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 4 cut(s) 54, 82, 334, 355
SseBI AGGCCT 1 cut(s) 126
StuI AGGCCT 1 cut(s) 126
TaaI ACNGT 2 cut(s) 16, 93
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 54, 82, 334, 355
Tru1I TTAA 2 cut(s) 117, 209
Tru9I TTAA 2 cut(s) 117, 209
TseI GCWGC 2 cut(s) 50, 170
TspDTI ATGAA 3 cut(s) 203, 272, 344
TspGWI ACGGA 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.