Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

15289180 .. 15290405

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCCATTGAGCCGAAGAAGCCAACCCTTGAGGAAACCATGCAACAACTCACACAAAATCAGATGGAGTTCCAAAAGGCCAATGTTCAGATGTTTCGTGCAATTTATGAGACAACCAAAGAGCAACAAGCAATTGCTGAAGCCATAGCCAAGTTGGAGGTCAACTCCATCATAACCCTCGGGAGTGGTAAATTTGAGAAGCATGAGCAAGTCATGGCTGTGATCACGTTGAGAAGTGGAAAAGAAGTTGGGAATAAAGTTCATGGTGCAGGAGATATTCAGGACGAACAATTCGAACATGGGATTAATGAAGCTGTTGCTATCCCAAGAATTAATGAATCAGCAGAAAAAGACTTAGCAGGAGGATCGAAACCGCAACAACAATCCCGAAAAAGAACTGATTCACAAGCAAAGGCTTCTTGGACTCCAAAAATGACTTCAAAGCCTATTAGAGACTCTCCATATGTTCAGCAATACCTAGAGCTTCTTAAAAATTCAAAGAAAGATCGACCTATGATTGAAATCTTGGAATTATTTCCAAGGGTGCAAATTGACAGTCCTTTGCTTGAAGCAATTCAGCAAGATCCAACATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTAGTCTATCAAGAGAATGTCTTCCATTTGAAAGCAGTATATTTGAAGAATGATGCCAAACAAAGTAATAGACGTTCTCACCGGAAGAAGCTAAAAAGGAGGAGGCTGCGAATCATTGTTAAACCTGAATGGAAGATTGGAAATTCACATGTGAGTAGGTTGTTTGCTGTTGGAATACCAAGGAAGCTGCTGTTTTGGATCTATCAAGTGACATTGATGGAAGAAGCAAGTGCAAGCTCGAATGAATATGGAGGTGTCTTTAGCAAAGGAAAGAAGAACAGATTTGCCCTCATGTTCACATCTACCGCCTTCGTACCAGGGATGTTTCCTAACTCTTGTTATTTTATTTTAGTAGTTGTTTTTCATCCATTAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

337

Amino Acids

38.56

Weight (kDa)

9.74

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	374, 939
AclWI	GGATC	3 cut(s)	373, 578, 839
AcsI	RAATTY	3 cut(s)	191, 493, 775
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	948
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	7 cut(s)	441, 498, 521, 569, 607, 664, 679
AjnI	CCWGG	1 cut(s)	949
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 753, 785
AluBI	AGCT	5 cut(s)	314, 484, 724, 820, 870
AluI	AGCT	5 cut(s)	314, 484, 724, 820, 870
Alw26I	GTCTC	2 cut(s)	104, 447
AlwI	GGATC	3 cut(s)	373, 578, 839
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	739, 820
ApoI	RAATTY	3 cut(s)	191, 493, 775
ArsI	GACNNNNNNTTYG	4 cut(s)	275, 307, 541, 573
AseI	ATTAAT	2 cut(s)	306, 333
Asp700I	GAANNNNTTC	4 cut(s)	400, 534, 573, 653
AsuHPI	GGTGA	1 cut(s)	704
AsuII	TTCGAA	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	726, 807
BccI	CCATC	3 cut(s)	58, 176, 844
BcgI	CGANNNNNNTGC	2 cut(s)	348, 382
BciT130I	CCWGG	1 cut(s)	951
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	104, 447
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	2 cut(s)	740, 821
BlsI	GCNGC	2 cut(s)	741, 822
Bme1390I	CCNGG	1 cut(s)	951
BmeT110I	CYCGRG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	646
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	4 cut(s)	178, 539, 812, 950
BsaWI	WCCGGW	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	4 cut(s)	178, 539, 812, 950
BseGI	GGATG	2 cut(s)	960, 997
BseJI	GATNNNNATC	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	726, 807
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	715
BsmAI	GTCTC	2 cut(s)	104, 447
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	222, 365, 505, 583, 831
BspACI	CCGC	2 cut(s)	374, 939
BspANI	GGCC	1 cut(s)	80
BspPI	GGATC	3 cut(s)	373, 578, 839
BspT104I	TTCGAA	1 cut(s)	294
BssECI	CCNNGG	4 cut(s)	178, 539, 812, 950
BssMI	GATC	5 cut(s)	222, 365, 505, 583, 831
BssT1I	CCWWGG	2 cut(s)	539, 812
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	960, 997
BstKTI	GATC	5 cut(s)	225, 368, 508, 586, 834
BstMAI	GTCTC	2 cut(s)	104, 447
BstMBI	GATC	5 cut(s)	222, 365, 505, 583, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	949
BstV1I	GCAGC	2 cut(s)	726, 807
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	2 cut(s)	583, 831
BstYI	RGATCY	2 cut(s)	583, 831
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	960, 997
Cac8I	GCNNGC	1 cut(s)	868
Csp6I	GTAC	1 cut(s)	947
CviAII	CATG	7 cut(s)	40, 203, 214, 263, 299, 782, 925
CviQI	GTAC	1 cut(s)	947
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	5 cut(s)	224, 367, 507, 585, 833
DpnII	GATC	5 cut(s)	222, 365, 505, 583, 831
Eco130I	CCWWGG	2 cut(s)	539, 812
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	949
EcoT14I	CCWWGG	2 cut(s)	539, 812
ErhI	CCWWGG	2 cut(s)	539, 812
FaeI	CATG	7 cut(s)	43, 206, 217, 266, 302, 785, 928
FatI	CATG	7 cut(s)	39, 202, 213, 262, 298, 781, 924
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	740, 821
FokI	GGATG	2 cut(s)	967, 984
Fsp4HI	GCNGC	2 cut(s)	740, 821
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	2 cut(s)	740, 821
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	715
Hin1II	CATG	7 cut(s)	43, 206, 217, 266, 302, 785, 928
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	5 cut(s)	338, 401, 424, 455, 744
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	2 cut(s)	163, 930
Hpy188I	TCNGA	2 cut(s)	63, 90
Hpy188III	TCNNGA	4 cut(s)	181, 281, 387, 644
Hpy8I	GTNNAC	2 cut(s)	163, 930
HpyAV	CCTTC	2 cut(s)	601, 952
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	227, 706
HpyCH4V	TGCA	7 cut(s)	43, 101, 269, 547, 596, 618, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	2 cut(s)	227, 706
Hsp92II	CATG	7 cut(s)	43, 206, 217, 266, 302, 785, 928
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	222, 365, 505, 583, 831
LpnPI	CCDG	7 cut(s)	255, 266, 345, 728, 771, 936, 963
Lsp1109I	GCAGC	2 cut(s)	726, 807
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	227, 706
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	5 cut(s)	224, 367, 507, 585, 833
MboI	GATC	5 cut(s)	222, 365, 505, 583, 831
MboII	GAAGA	8 cut(s)	28, 642, 646, 691, 730, 778, 866, 919
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	2 cut(s)	583, 831
MlyI	GAGTC	2 cut(s)	418, 449
MmeI	TCCRAC	3 cut(s)	135, 611, 784
MnlI	CCTC	8 cut(s)	25, 151, 188, 356, 726, 729, 878, 932
MroXI	GAANNNNTTC	4 cut(s)	400, 534, 573, 653
MseI	TTAA	4 cut(s)	306, 333, 489, 753
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	951
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	951
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	5 cut(s)	222, 365, 505, 583, 831
NlaIII	CATG	7 cut(s)	43, 206, 217, 266, 302, 785, 928
NmuCI	GTSAC	1 cut(s)	841
NspI	RCATGY	1 cut(s)	785
NspV	TTCGAA	1 cut(s)	294
PciI	ACATGT	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdmI	GAANNNNTTC	4 cut(s)	400, 534, 573, 653
PfeI	GAWTC	3 cut(s)	338, 401, 744
PkrI	GCNGC	2 cut(s)	741, 822
PleI	GAGTC	2 cut(s)	418, 449
PpsI	GAGTC	2 cut(s)	418, 449
PscI	ACATGT	1 cut(s)	781
PshBI	ATTAAT	2 cut(s)	306, 333
Psp6I	CCWGG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	949
PsrI	GAACNNNNNNTAC	2 cut(s)	691, 723
PsuI	RGATCY	2 cut(s)	583, 831
RsaI	GTAC	1 cut(s)	948
RsaNI	GTAC	1 cut(s)	947
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	306, 333, 489, 753
SatI	GCNGC	2 cut(s)	740, 821
Sau3AI	GATC	5 cut(s)	222, 365, 505, 583, 831
SchI	GAGTC	2 cut(s)	418, 449
ScrFI	CCNGG	1 cut(s)	951
SfaNI	GCATC	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	2 cut(s)	374, 939
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	2 cut(s)	539, 812
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	230, 709
TaqI	TCGA	4 cut(s)	294, 368, 508, 872
TfiI	GAWTC	3 cut(s)	338, 401, 744
Tru1I	TTAA	4 cut(s)	306, 333, 489, 753
Tru9I	TTAA	4 cut(s)	306, 333, 489, 753
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	2 cut(s)	739, 820
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	5 cut(s)	251, 324, 351, 891, 986
VspI	ATTAAT	2 cut(s)	306, 333
XapI	RAATTY	3 cut(s)	191, 493, 775
XceI	RCATGY	1 cut(s)	785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	4 cut(s)	400, 534, 573, 653
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.