Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

48661990 .. 48666886

Gene Structure 4897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGTGCAGGAGATATTCAGGAAGAAGAATTCGAACATGGGATTAATGAAGCTGTTGTTATCCCAAAAATTAATGAATCAACGAGAAGAAGACTCGGCAAGAGGATCGAAGCTGCAACGCAATCCCGGAGAAGAAGCTGATTCACAAGCAAAGGCTTCTTGGACTCCAAAAACGACTTTAAAGCCTATTAGAGACTCTCCATATGTTCAGCAATACCTAGAGCTTCTTAAAAATTCAAAGAAAGATTGGCATATGATTGAAATTTTGGAATTATTTCCAAAGGTGCAAATTGACATTCCTTTGCTTGAAGCAATTCAGCAAGATCCAGCATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTAGTCTATCAAGAGAATGTCTTCCATTTGAAAGCAGTATATTTGAAGAATGATGCAAGACAAAGTAATAGACCTTCTCACTGGAAGAAGCTAAAAAGGAGGAGGCTGCGAATCATTGTTAAACCTGAATGGAAGATTGGAAATTCACATATGAGTAGGTTGTTTGCTGCTGGAATATCAAGGAAGTTGCTGTTTTGGATCTATCAAGTGACATTGATAGAAGAAACAAGTGCAAGCTCGAATGAATATGGAGGTGTCTTTAGCAACGGAAAGAAGAATAGATTTGCCATCATGTTTGCATCTACGCCTTCTATGCACTTCAATCCTGGTACTGATTTGTTCTTCACATTGCGGACAATGCTCAATTTAAGTTTGGGGCGAACCCAATCTTTGATACCCAAGTGGCGGGGGTCAACATGCCTGATCGGGGCCATCGAAGATTCTGTTGTCGCATCCCCTTACTCGTCCCTGGAGGACCTTGGTTTGACTGCAACGCCACGTGGTGGTCGTTGTCAAAGTGAGGAGTTACCTAGGGAATCGCCTTTGGCGGAAGTCCCTCGGCTAATAGTAAGTGGCCAGCAGTGTCGCGGGGATCCGCACGGCGATAACCTAGTGAATGGAAATGCGGTCAGCGGTGATGGCCTCACTTGCAAGGTAAAGGGGAAATTCGCTAGCGGTGTTGGCCTAGCGGAGACTATCTTGCTTGCAAGATGCAAAGGGAGAGGCTCCGCTAGTGGACGGAGACTATCTCGCTTGCAAGATGAAAAGGGAGAGGCTCCACTAGCGGCGTTGCGCTTAGCGGAGACTATCTCTCTTGCAAGATTAAAAGGGAGAAGTTCCGCTAGCGGAGTTGCACCTAGCGGAGACTATCTCGCTTGCAAGATGCAAAGGGAGAGGCTCGCTAGAGGAGTTGCGCTTAGCGGAGACTATCTCACTTGCAAGATGAAGAGGGAGAAGTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

445

Amino Acids

49.74

Weight (kDa)

9.94

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccII	CGCG	1 cut(s)	960
AclWI	GGATC	5 cut(s)	112, 317, 578, 959, 972
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	5 cut(s)	28, 232, 261, 514, 1037
AcvI	CACGTG	1 cut(s)	872
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	3 cut(s)	777, 799, 875
AgsI	TTSAA	7 cut(s)	237, 260, 308, 346, 403, 418, 694
AjnI	CCWGG	2 cut(s)	697, 840
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	6 cut(s)	52, 112, 137, 223, 463, 609
AluI	AGCT	6 cut(s)	52, 112, 137, 223, 463, 609
Alw26I	GTCTC	6 cut(s)	186, 1058, 1108, 1169, 1230, 1290
AlwI	GGATC	5 cut(s)	112, 317, 578, 959, 972
AoxI	GGCC	4 cut(s)	801, 946, 1012, 1054
ApeKI	GCWGC	3 cut(s)	112, 478, 539
ApoI	RAATTY	5 cut(s)	28, 232, 261, 514, 1037
AseI	ATTAAT	2 cut(s)	44, 71
Asp700I	GAANNNNTTC	3 cut(s)	273, 312, 392
AspA2I	CCTAGG	1 cut(s)	902
AspLEI	GCGC	2 cut(s)	1167, 1288
AspS9I	GGNCC	2 cut(s)	801, 847
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	1019
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	2 cut(s)	1043, 1214
AvaII	GGWCC	1 cut(s)	847
AvrII	CCTAGG	1 cut(s)	902
BaeI	ACNNNNGTAYC	2 cut(s)	758, 791
BalI	TGGCCA	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	964
BarI	GAAGNNNNNNTAC	2 cut(s)	430, 462
BbrPI	CACGTG	1 cut(s)	872
BbsI	GAAGAC	2 cut(s)	96, 385
BbvI	GCAGC	3 cut(s)	99, 465, 526
BccI	CCATC	3 cut(s)	668, 812, 1004
BceAI	ACGGC	1 cut(s)	988
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	2 cut(s)	699, 842
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	6 cut(s)	186, 1058, 1108, 1169, 1230, 1290
BisI	GCNGC	4 cut(s)	113, 479, 540, 1158
BlnI	CCTAGG	1 cut(s)	902
BlpI	GCTNAGC	2 cut(s)	1168, 1289
BlsI	GCNGC	4 cut(s)	114, 480, 541, 1159
Bme1390I	CCNGG	3 cut(s)	126, 699, 842
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	801, 847
BmiI	GGNNCC	4 cut(s)	802, 966, 1099, 1149
BmrFI	CCNGG	3 cut(s)	126, 699, 842
BmsI	GCATC	5 cut(s)	415, 680, 833, 1073, 1245
BmtI	GCTAGC	2 cut(s)	1047, 1218
BpiI	GAAGAC	2 cut(s)	96, 385
BplI	GAGNNNNNCTC	8 cut(s)	1105, 1137, 1166, 1198, 1227, 1259, 1287, 1319
BpmI	CTGGAG	1 cut(s)	863
Bpu1102I	GCTNAGC	2 cut(s)	1168, 1289
Bpu14I	TTCGAA	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	872
BsaJI	CCNNGG	4 cut(s)	840, 850, 902, 929
Bsc4I	CCNNNNNNNGG	3 cut(s)	777, 799, 875
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	719
BseBI	CCWGG	2 cut(s)	699, 842
BseDI	CCNNGG	4 cut(s)	840, 850, 902, 929
BseGI	GGATG	1 cut(s)	824
BseLI	CCNNNNNNNGG	3 cut(s)	777, 799, 875
BseMI	GCAATG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	3 cut(s)	487, 908, 1293
BseXI	GCAGC	3 cut(s)	99, 465, 526
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	4 cut(s)	803, 948, 1014, 1056
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	823, 911
BslI	CCNNNNNNNGG	3 cut(s)	777, 799, 875
BsmAI	GTCTC	6 cut(s)	186, 1058, 1108, 1169, 1230, 1290
BsmFI	GGGAC	2 cut(s)	823, 911
BsnI	GGCC	4 cut(s)	803, 948, 1014, 1056
Bsp119I	TTCGAA	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	104, 322, 570, 795, 964
Bsp1720I	GCTNAGC	2 cut(s)	1168, 1289
BspANI	GGCC	4 cut(s)	803, 948, 1014, 1056
BspFNI	CGCG	1 cut(s)	960
BspLI	GGNNCC	4 cut(s)	802, 966, 1099, 1149
BspOI	GCTAGC	2 cut(s)	1047, 1218
BspPI	GGATC	5 cut(s)	112, 317, 578, 959, 972
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	4 cut(s)	840, 850, 902, 929
BssMI	GATC	5 cut(s)	104, 322, 570, 795, 964
BssT1I	CCWWGG	2 cut(s)	850, 902
Bst2UI	CCWGG	2 cut(s)	699, 842
Bst6I	CTCTTC	1 cut(s)	1313
BstBAI	YACGTR	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	8 cut(s)	607, 950, 1045, 1077, 1127, 1216, 1249, 1272
BstDEI	CTNAG	2 cut(s)	1168, 1289
BstF5I	GGATG	1 cut(s)	824
BstFNI	CGCG	1 cut(s)	960
BstHHI	GCGC	2 cut(s)	1167, 1288
BstKTI	GATC	5 cut(s)	107, 325, 573, 798, 967
BstMAI	GTCTC	6 cut(s)	186, 1058, 1108, 1169, 1230, 1290
BstMBI	GATC	5 cut(s)	104, 322, 570, 795, 964
BstMWI	GCNNNNNNNGC	6 cut(s)	685, 730, 1011, 1020, 1053, 1154
BstNI	CCWGG	2 cut(s)	699, 842
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	3 cut(s)	124, 697, 840
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	3 cut(s)	99, 465, 526
BstV2I	GAAGAC	2 cut(s)	96, 385
BstX2I	RGATCY	3 cut(s)	322, 570, 964
BstYI	RGATCY	3 cut(s)	322, 570, 964
BsuRI	GGCC	4 cut(s)	803, 948, 1014, 1056
BtsCI	GGATG	1 cut(s)	824
BtsI	GCAGTG	1 cut(s)	959
BtsIMutI	CAGTG	2 cut(s)	451, 959
Cac8I	GCNNGC	8 cut(s)	607, 950, 1045, 1077, 1127, 1216, 1249, 1272
CfoI	GCGC	2 cut(s)	1167, 1288
Cfr13I	GGNCC	2 cut(s)	801, 847
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	3 cut(s)	37, 664, 789
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	2 cut(s)	1168, 1289
DpnI	GATC	5 cut(s)	106, 324, 572, 797, 966
DpnII	GATC	5 cut(s)	104, 322, 570, 795, 964
DraI	TTTAAA	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	875
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	1313
EarI	CTCTTC	1 cut(s)	1313
EciI	GGCGGA	1 cut(s)	935
Eco130I	CCWWGG	2 cut(s)	850, 902
Eco47I	GGWCC	1 cut(s)	847
Eco72I	CACGTG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	697, 840
EcoT14I	CCWWGG	2 cut(s)	850, 902
ErhI	CCWWGG	2 cut(s)	850, 902
FaeI	CATG	3 cut(s)	40, 667, 792
FaqI	GGGAC	2 cut(s)	823, 911
FatI	CATG	3 cut(s)	36, 663, 788
FauI	CCCGC	2 cut(s)	771, 953
FauNDI	CATATG	3 cut(s)	202, 252, 522
Fnu4HI	GCNGC	4 cut(s)	113, 479, 540, 1158
FokI	GGATG	1 cut(s)	811
Fsp4HI	GCNGC	4 cut(s)	113, 479, 540, 1158
GlaI	GCGC	2 cut(s)	1166, 1287
GluI	GCNGC	4 cut(s)	113, 479, 540, 1158
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	4 cut(s)	803, 948, 1014, 1056
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	2 cut(s)	1167, 1288
Hin1II	CATG	3 cut(s)	40, 667, 792
Hin6I	GCGC	2 cut(s)	1165, 1286
HinP1I	GCGC	2 cut(s)	1165, 1286
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HinfI	GANTC	8 cut(s)	76, 92, 140, 163, 194, 483, 812, 908
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	1019
Hpy166II	GTNNAC	2 cut(s)	786, 1109
Hpy188III	TCNNGA	2 cut(s)	19, 383
Hpy8I	GTNNAC	2 cut(s)	786, 1109
HpyAV	CCTTC	3 cut(s)	340, 456, 690
HpyCH4IV	ACGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	6 cut(s)	685, 730, 1011, 1020, 1053, 1154
HpyF3I	CTNAG	2 cut(s)	1168, 1289
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	3 cut(s)	40, 667, 792
HspAI	GCGC	2 cut(s)	1165, 1286
Kzo9I	GATC	5 cut(s)	104, 322, 570, 795, 964
LmnI	GCTCC	2 cut(s)	1103, 1153
Lsp1109I	GCAGC	3 cut(s)	99, 465, 526
LweI	GCATC	5 cut(s)	415, 680, 833, 1073, 1245
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	580, 897
MalI	GATC	5 cut(s)	106, 324, 572, 797, 966
MboI	GATC	5 cut(s)	104, 322, 570, 795, 964
MflI	RGATCY	3 cut(s)	322, 570, 964
MlsI	TGGCCA	1 cut(s)	948
MluNI	TGGCCA	1 cut(s)	948
MlyI	GAGTC	3 cut(s)	86, 157, 188
Mox20I	TGGCCA	1 cut(s)	948
MroXI	GAANNNNTTC	3 cut(s)	273, 312, 392
MscI	TGGCCA	1 cut(s)	948
MseI	TTAA	7 cut(s)	44, 71, 179, 228, 492, 740, 1196
Msp20I	TGGCCA	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	1005
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	126, 699, 842
MvaI	CCWGG	2 cut(s)	699, 842
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	6 cut(s)	685, 730, 1011, 1020, 1053, 1154
NciI	CCSGG	1 cut(s)	126
NdeI	CATATG	3 cut(s)	202, 252, 522
NdeII	GATC	5 cut(s)	104, 322, 570, 795, 964
NheI	GCTAGC	2 cut(s)	1043, 1214
NlaIII	CATG	3 cut(s)	40, 667, 792
NlaIV	GGNNCC	4 cut(s)	802, 966, 1099, 1149
NmeAIII	GCCGAG	2 cut(s)	74, 910
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	792
NspV	TTCGAA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	804, 877
PdmI	GAANNNNTTC	3 cut(s)	273, 312, 392
PfeI	GAWTC	5 cut(s)	76, 140, 483, 812, 908
PflMI	CCANNNNNTGG	1 cut(s)	875
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	114, 480, 541, 1159
PleI	GAGTC	3 cut(s)	86, 157, 188
PmaCI	CACGTG	1 cut(s)	872
PmlI	CACGTG	1 cut(s)	872
PpsI	GAGTC	3 cut(s)	86, 157, 188
Ppu21I	YACGTR	1 cut(s)	872
PpuMI	RGGWCCY	1 cut(s)	847
PshBI	ATTAAT	2 cut(s)	44, 71
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	697, 840
PspCI	CACGTG	1 cut(s)	872
PspGI	CCWGG	2 cut(s)	697, 840
PspN4I	GGNNCC	4 cut(s)	802, 966, 1099, 1149
PspPI	GGNCC	2 cut(s)	801, 847
PspPPI	RGGWCCY	1 cut(s)	847
PsuI	RGATCY	3 cut(s)	322, 570, 964
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
SaqAI	TTAA	7 cut(s)	44, 71, 179, 228, 492, 740, 1196
SatI	GCNGC	4 cut(s)	113, 479, 540, 1158
Sau3AI	GATC	5 cut(s)	104, 322, 570, 795, 964
Sau96I	GGNCC	2 cut(s)	801, 847
SchI	GAGTC	3 cut(s)	86, 157, 188
ScrFI	CCNGG	3 cut(s)	126, 699, 842
SfaNI	GCATC	5 cut(s)	415, 680, 833, 1073, 1245
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	847
StyD4I	CCNGG	3 cut(s)	124, 697, 840
StyI	CCWWGG	2 cut(s)	850, 902
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	4 cut(s)	32, 107, 611, 807
TauI	GCSGC	1 cut(s)	1160
TfiI	GAWTC	5 cut(s)	76, 140, 483, 812, 908
Tru1I	TTAA	7 cut(s)	44, 71, 179, 228, 492, 740, 1196
Tru9I	TTAA	7 cut(s)	44, 71, 179, 228, 492, 740, 1196
TscAI	CASTG	2 cut(s)	458, 959
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	112, 478, 539
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	5 cut(s)	62, 89, 630, 1149, 1331
TspGWI	ACGGA	2 cut(s)	654, 1126
TspRI	CASTG	2 cut(s)	458, 959
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	847
VspI	ATTAAT	2 cut(s)	44, 71
XapI	RAATTY	5 cut(s)	28, 232, 261, 514, 1037
XceI	RCATGY	1 cut(s)	792
XmaJI	CCTAGG	1 cut(s)	902
XmnI	GAANNNNTTC	3 cut(s)	273, 312, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.