transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g29683 FvH4_1g29684 FvH4_4g02083 |
| pyrus_communis | pycom12g06170 |
| rosa_chinensis | RchiOBHm_Chr2g0131801 |
| rosa_multiflora | Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 6 cut(s) | 8, 44, 74, 100, 245, 272 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 4 cut(s) | 11, 53, 182, 308 |
| AluI | AGCT | 4 cut(s) | 11, 53, 182, 308 |
| Alw26I | GTCTC | 2 cut(s) | 14, 164 |
| ApeKI | GCWGC | 2 cut(s) | 34, 256 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 207, 240, 279, 312 |
| BbvI | GCAGC | 2 cut(s) | 46, 268 |
| BclI | TGATCA | 1 cut(s) | 186 |
| BcoDI | GTCTC | 2 cut(s) | 14, 164 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BisI | GCNGC | 2 cut(s) | 35, 257 |
| BlsI | GCNGC | 2 cut(s) | 36, 258 |
| BmrI | ACTGGG | 1 cut(s) | 296 |
| BmuI | ACTGGG | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 1 cut(s) | 33 |
| BsaI | GGTCTC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 1 cut(s) | 146 |
| Bse1I | ACTGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 146 |
| BseNI | ACTGG | 1 cut(s) | 302 |
| BseRI | GAGGAG | 1 cut(s) | 211 |
| BseXI | GCAGC | 2 cut(s) | 46, 268 |
| BsmAI | GTCTC | 2 cut(s) | 14, 164 |
| Bso31I | GGTCTC | 1 cut(s) | 14 |
| Bsp143I | GATC | 1 cut(s) | 186 |
| BspQI | GCTCTTC | 1 cut(s) | 246 |
| BspTNI | GGTCTC | 1 cut(s) | 14 |
| BsrI | ACTGG | 1 cut(s) | 302 |
| BssECI | CCNNGG | 1 cut(s) | 146 |
| BssMI | GATC | 1 cut(s) | 186 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| Bst6I | CTCTTC | 2 cut(s) | 246, 258 |
| BstDEI | CTNAG | 1 cut(s) | 60 |
| BstKTI | GATC | 1 cut(s) | 189 |
| BstMAI | GTCTC | 2 cut(s) | 14, 164 |
| BstMBI | GATC | 1 cut(s) | 186 |
| BstV1I | GCAGC | 2 cut(s) | 46, 268 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 208, 243 |
| CviAII | CATG | 1 cut(s) | 167 |
| CviJI | RGCY | 6 cut(s) | 11, 53, 129, 182, 231, 308 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 53, 129, 182, 231, 308 |
| DdeI | CTNAG | 1 cut(s) | 60 |
| DpnI | GATC | 1 cut(s) | 188 |
| DpnII | GATC | 1 cut(s) | 186 |
| Eam1104I | CTCTTC | 2 cut(s) | 246, 258 |
| EarI | CTCTTC | 2 cut(s) | 246, 258 |
| Eco31I | GGTCTC | 1 cut(s) | 14 |
| FaeI | CATG | 1 cut(s) | 170 |
| FaiI | YATR | 3 cut(s) | 108, 168, 176 |
| FatI | CATG | 1 cut(s) | 166 |
| FbaI | TGATCA | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 35, 257 |
| Fsp4HI | GCNGC | 2 cut(s) | 35, 257 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 2 cut(s) | 35, 257 |
| Hin1II | CATG | 1 cut(s) | 170 |
| HinfI | GANTC | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 1 cut(s) | 147 |
| Hpy188III | TCNNGA | 2 cut(s) | 17, 245 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4IV | ACGT | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 60 |
| HpySE526I | ACGT | 1 cut(s) | 191 |
| Hsp92II | CATG | 1 cut(s) | 170 |
| Ksp22I | TGATCA | 1 cut(s) | 186 |
| Kzo9I | GATC | 1 cut(s) | 186 |
| LguI | GCTCTTC | 1 cut(s) | 246 |
| LpnPI | CCDG | 3 cut(s) | 2, 261, 315 |
| Lsp1109I | GCAGC | 2 cut(s) | 46, 268 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 191 |
| MalI | GATC | 1 cut(s) | 188 |
| MboI | GATC | 1 cut(s) | 186 |
| MboII | GAAGA | 3 cut(s) | 260, 263, 275 |
| MluCI | AATT | 2 cut(s) | 84, 155 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| MnlI | CCTC | 3 cut(s) | 141, 144, 189 |
| MseI | TTAA | 1 cut(s) | 141 |
| NdeII | GATC | 1 cut(s) | 186 |
| NlaIII | CATG | 1 cut(s) | 170 |
| PciSI | GCTCTTC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 2 cut(s) | 36, 258 |
| SapI | GCTCTTC | 1 cut(s) | 246 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 2 cut(s) | 35, 257 |
| Sau3AI | GATC | 1 cut(s) | 186 |
| SetI | ASST | 7 cut(s) | 13, 55, 136, 184, 194, 213, 310 |
| SmlI | CTYRAG | 1 cut(s) | 48 |
| SmoI | CTYRAG | 1 cut(s) | 48 |
| Sse9I | AATT | 2 cut(s) | 84, 155 |
| SspMI | CTAG | 1 cut(s) | 126 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaiI | ACGT | 1 cut(s) | 194 |
| TasI | AATT | 2 cut(s) | 84, 155 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TseI | GCWGC | 2 cut(s) | 34, 256 |
| TspDTI | ATGAA | 2 cut(s) | 123, 191 |
| XspI | CTAG | 1 cut(s) | 126 |