Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

8851236 .. 8853835

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACGGAGAAGCCGCCGATGGATCGTCGGATGCCGCCGAGCACGATGGTGGTGGAGGTGATGCGGGGTTATGCTGGATACCCACCGGTGGAGGAGAGAGAGAAACCCGGACGTAGCCTCACCGTAACACCTCTTGGCGGTCGTCTCGAGGTTGAGGCATTGCCTCGGGAATTTCTATTGGCGGAAGTCCCTCCGTTGATATTAAGTGGCAAGCGGTGTCACGGGGACTTGCTTGGTGGTAGCCCGGTGAGCGGTGTTGCACTTAGCGAGACTGTCGCGCTTGCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

6.58

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	278
AciI	CCGC	7 cut(s)	14, 35, 64, 138, 182, 214, 252
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	88, 137, 251
AgeI	ACCGGT	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	149, 263
AlwI	GGATC	1 cut(s)	30
Ama87I	CYCGRG	2 cut(s)	146, 165
ApoI	RAATTY	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	280
AsuC2I	CCSGG	2 cut(s)	108, 245
AsuHPI	GGTGA	3 cut(s)	70, 112, 259
AvaI	CYCGRG	2 cut(s)	146, 165
Bbv12I	GWGCWC	1 cut(s)	44
BccI	CCATC	2 cut(s)	13, 40
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	108, 245
BcoDI	GTCTC	2 cut(s)	149, 263
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	14, 35
BlsI	GCNGC	2 cut(s)	15, 36
Bme1390I	CCNGG	2 cut(s)	108, 245
BmeT110I	CYCGRG	2 cut(s)	146, 165
BmrFI	CCNGG	2 cut(s)	108, 245
BmsI	GCATC	2 cut(s)	21, 51
BpuMI	CCSGG	2 cut(s)	108, 245
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 137, 251
Bse118I	RCCGGY	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	88, 137, 251
BseMI	GCAATG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	2 cut(s)	146, 165
BsiSI	CCGG	3 cut(s)	86, 108, 245
BslFI	GGGAC	2 cut(s)	173, 239
BslI	CCNNNNNNNGG	3 cut(s)	88, 137, 251
BsmAI	GTCTC	2 cut(s)	149, 263
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	173, 239
BsoBI	CYCGRG	2 cut(s)	146, 165
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	7 cut(s)	14, 35, 64, 138, 182, 214, 252
BspFNI	CGCG	1 cut(s)	278
BspPI	GGATC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	124, 274
BstC8I	GCNNGC	2 cut(s)	212, 282
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	149, 263
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	106, 243
BstUI	CGCG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	212, 282
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	85
CviJI	RGCY	3 cut(s)	13, 117, 243
CviKI_1	RGCY	3 cut(s)	13, 117, 243
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	146, 165
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	1 cut(s)	72
FaqI	GGGAC	2 cut(s)	173, 239
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	14, 35
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	14, 35
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	14, 35
HapII	CCGG	3 cut(s)	86, 108, 245
HhaI	GCGC	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HpaII	CCGG	3 cut(s)	86, 108, 245
HphI	GGTGA	3 cut(s)	70, 112, 259
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	146, 167
Hpy99I	CGWCG	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	124, 274
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	112
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	60, 99, 121, 258
LweI	GCATC	2 cut(s)	21, 51
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	124, 218
MalI	GATC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	8 cut(s)	49, 85, 128, 141, 142, 148, 174, 201
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	3 cut(s)	86, 108, 245
MspR9I	CCNGG	2 cut(s)	108, 245
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	108, 245
NdeII	GATC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	218
OliI	CACNNNNGTG	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	15, 36
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	14, 35
Sau3AI	GATC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	108, 245
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	4 cut(s)	60, 115, 133, 153
SfaNI	GCATC	2 cut(s)	21, 51
Sfr274I	CTCGAG	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	7 cut(s)	14, 35, 64, 138, 182, 214, 252
StyD4I	CCNGG	2 cut(s)	106, 243
TaaI	ACNGT	2 cut(s)	124, 274
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	170
TauI	GCSGC	2 cut(s)	16, 37
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspGWI	ACGGA	2 cut(s)	20, 183
XapI	RAATTY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.