Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Forward (+)

1883770 .. 1884264

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02083.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTAATGCAACAGTGGGTGGGAGTTTAATGGAGAAAACAGCAGAAGAGGCCATTGAAGCATTCGAAAACATATGTGAAAATTCGCAGCATTGGGATTACAATCCAAGGGGTAGAGTGCAAGCTCCAGCAGCAAAAAGTATGTATGAAGTGAAAGCACAAGGAGGTCTAGAGGAAGAAGTTGCAGCTCTAAGGAGGCAACTACAAGGGCTTACTCCACTTTTGAGCAAGGTGAAGGAGACGTGTGCTCTATATTCAAGTTTCACCCATGACATTGATGAATGTCCCTCAAATCCGATGCTAGAAGAAGTGCAACAAGTGAATCATTTTAATGCAAGGCCAAGGAGTGATCAATATTCGGATGGAAAAATCCTCCAAATAATTCTTGGAGGAACAATCAAGGTTATCAAGGTGCTGGACCTTCACAAAGATCATATCAACCATATCAAGGAGCATGAGCTGAACCACCGAAGTCCTCACTTGAAGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

6.19

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	59, 258, 484
AjiI	CACGTC	1 cut(s)	243
AluBI	AGCT	3 cut(s)	125, 188, 460
AluI	AGCT	3 cut(s)	125, 188, 460
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	51, 338
ApeKI	GCWGC	3 cut(s)	88, 131, 185
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	244, 256
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	100, 143, 197
BccI	CCATC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	170, 302
BisI	GCNGC	3 cut(s)	89, 132, 186
BlsI	GCNGC	3 cut(s)	90, 133, 187
Bme18I	GGWCC	1 cut(s)	418
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	418
BmsI	GCATC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	107, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	107, 341
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	100, 143, 197
BshFI	GGCC	2 cut(s)	53, 340
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	53, 340
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	349, 430
BspANI	GGCC	2 cut(s)	53, 340
BspT104I	TTCGAA	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	107, 341
BssMI	GATC	2 cut(s)	349, 430
BssT1I	CCWWGG	2 cut(s)	107, 341
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	2 cut(s)	352, 433
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	349, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 131
BstV1I	GCAGC	3 cut(s)	100, 143, 197
BsuRI	GGCC	2 cut(s)	53, 340
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	418
CviAII	CATG	2 cut(s)	269, 455
CviJI	RGCY	6 cut(s)	53, 125, 188, 211, 340, 460
CviKI_1	RGCY	6 cut(s)	53, 125, 188, 211, 340, 460
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	351, 432
DpnII	GATC	2 cut(s)	349, 430
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	107, 341
Eco47I	GGWCC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	107, 341
ErhI	CCWWGG	2 cut(s)	107, 341
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	272, 458
FaiI	YATR	9 cut(s)	74, 76, 143, 147, 253, 270, 435, 444, 456
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	2 cut(s)	268, 454
FauNDI	CATATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	89, 132, 186
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	89, 132, 186
FspBI	CTAG	2 cut(s)	170, 302
GluI	GCNGC	3 cut(s)	89, 132, 186
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	53, 340
Hin1II	CATG	2 cut(s)	272, 458
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	2 cut(s)	244, 256
Hpy188I	TCNGA	2 cut(s)	297, 361
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	229, 431
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	11, 121, 185, 313, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 131
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	272, 458
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	349, 430
LmnI	GCTCC	2 cut(s)	130, 451
LpnPI	CCDG	2 cut(s)	141, 401
Lsp1109I	GCAGC	3 cut(s)	100, 143, 197
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	170, 302
MaeII	ACGT	1 cut(s)	242
MalI	GATC	2 cut(s)	351, 432
MboI	GATC	2 cut(s)	349, 430
MboII	GAAGA	3 cut(s)	59, 188, 317
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	2 cut(s)	82, 381
MnlI	CCTC	8 cut(s)	43, 158, 166, 189, 298, 383, 383, 486
MseI	TTAA	3 cut(s)	6, 29, 330
MslI	CAYNNNNRTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 131
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	2 cut(s)	349, 430
NlaIII	CATG	2 cut(s)	272, 458
NspV	TTCGAA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	90, 133, 187
PspPI	GGNCC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	6, 29, 330
SatI	GCNGC	3 cut(s)	89, 132, 186
Sau3AI	GATC	2 cut(s)	349, 430
Sau96I	GGNCC	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	9 cut(s)	127, 169, 190, 234, 245, 405, 414, 423, 462
SfaNI	GCATC	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	66
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	2 cut(s)	82, 381
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	2 cut(s)	170, 302
StyI	CCWWGG	2 cut(s)	107, 341
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	82, 381
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	6, 29, 330
Tru9I	TTAA	3 cut(s)	6, 29, 330
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	3 cut(s)	88, 131, 185
TspDTI	ATGAA	2 cut(s)	162, 294
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	82
XbaI	TCTAGA	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XspI	CTAG	2 cut(s)	170, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.