Rroxscaffold_1G00045600

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012570
Physical Location & Seq
Reverse (-)
64757679 .. 64758513
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045600.1

Sequence Viewer

Length: 819 bp
ATGGAAGAATTTGAATTCATCTCCCCCCACAATCATGTTCAATACCATGAGCAGGTCAACTCCATCATAACCCTCGGGAGTGGTACACAAATGGATCATCAATTTGAAGTGGACTCCGAGAATAAATCAACAGATTCTCTAAAAGATGATGAAATCGGGATAGGTAAATTTGAGAAGCATGAGCAAGTCATGGCTGTGATCACGTCGAGAAGTGGAAAAGAAGTTGGGAATGAAGTTCATGGGAAAAAGAATTCGAACATGGGATCAATGAAGCTGTTGCTATCCCAAAAATTAATGAATCAGCGAGAAAAAGACTCAGCAGGAGGATCGAAACTGCACAACAATCCCGGCAAAGAACTGATTCACAAACAAAGGCTTCTTGGACTCCAAAAAATGACTTCAAAGCCTATTAGAGACTCTCCATATGTTCAGCAATACCTAGAGCTTCTTAAAAATTCAAAGAAAGATCGGCCTATGATTGAAATCTTGGAATTATTTCCAAAGGTGCAAATTGACATTCCTTTGCTTGAAGCAATTCAGCAAGATCCAACATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTAGTCTATCAAGAGAATGTCTTCCATTTAAAAGCAGTATATTTGAAGAATGATGCAAGACAAAGTAATAGACCTTCTCACCGGAAGAAGCTAAAAAGGAGGAGGCTGCGAATCATTGTTAAACCTGAATGGAAGATTGGAAATTCACATATGAGTAGGTTGTTTGCTGCTGGAATATCAAGGAAGTTGCTGTTTTGGATCTATCAAGTGACATTGATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

272

Amino Acids

31.55

Weight (kDa)

9.67

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AclWI GGATC 5 cut(s) 102, 271, 334, 539, 800
AcsI RAATTY 6 cut(s) 8, 14, 167, 250, 454, 736
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 9 cut(s) 14, 41, 107, 402, 459, 482, 530, 568, 640
AjiI CACGTC 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AluBI AGCT 3 cut(s) 274, 445, 685
AluI AGCT 3 cut(s) 274, 445, 685
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 5 cut(s) 102, 271, 334, 539, 800
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 700, 761
ApoI RAATTY 6 cut(s) 8, 14, 167, 250, 454, 736
AseI ATTAAT 1 cut(s) 293
Asp700I GAANNNNTTC 4 cut(s) 360, 495, 534, 614
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BbsI GAAGAC 1 cut(s) 607
BbvI GCAGC 2 cut(s) 687, 748
BccI CCATC 2 cut(s) 71, 805
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 701, 762
BlsI GCNGC 2 cut(s) 702, 763
Bme1390I CCNGG 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 607
Bpu14I TTCGAA 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 675
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 709
BseXI GCAGC 2 cut(s) 687, 748
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 348, 676
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 408
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 329
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 5 cut(s) 102, 271, 334, 539, 800
BspT104I TTCGAA 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 316
BstKTI GATC 7 cut(s) 97, 201, 266, 329, 469, 547, 795
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 687, 748
BstV2I GAAGAC 1 cut(s) 607
BstX2I RGATCY 2 cut(s) 544, 792
BstYI RGATCY 2 cut(s) 544, 792
BsuRI GGCC 1 cut(s) 472
BtrI CACGTC 1 cut(s) 204
BveI ACCTGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 84
CviAII CATG 6 cut(s) 35, 47, 179, 190, 239, 259
CviJI RGCY 8 cut(s) 194, 274, 376, 406, 445, 472, 685, 700
CviKI_1 RGCY 8 cut(s) 194, 274, 376, 406, 445, 472, 685, 700
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 316
DpnI GATC 7 cut(s) 96, 200, 265, 328, 468, 546, 794
DpnII GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
DraI TTTAAA 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 2 cut(s) 14, 250
FaeI CATG 6 cut(s) 38, 50, 182, 193, 242, 262
FatI CATG 6 cut(s) 34, 46, 178, 189, 238, 258
FauNDI CATATG 2 cut(s) 424, 744
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 701, 762
Fsp4HI GCNGC 2 cut(s) 701, 762
FspBI CTAG 1 cut(s) 440
GluI GCNGC 2 cut(s) 701, 762
HaeIII GGCC 1 cut(s) 472
HapII CCGG 2 cut(s) 348, 676
Hin1II CATG 6 cut(s) 38, 50, 182, 193, 242, 262
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 8 cut(s) 113, 134, 298, 314, 361, 384, 416, 705
HpaII CCGG 2 cut(s) 348, 676
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 3 cut(s) 58, 86, 112
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 4 cut(s) 76, 157, 207, 605
Hpy8I GTNNAC 3 cut(s) 58, 86, 112
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 562, 678
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 337, 508, 557, 579, 650
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 6 cut(s) 38, 50, 182, 193, 242, 262
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
LpnPI CCDG 6 cut(s) 38, 306, 361, 689, 732, 750
Lsp1109I GCAGC 2 cut(s) 687, 748
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 802
MalI GATC 7 cut(s) 96, 200, 265, 328, 468, 546, 794
MboI GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
MboII GAAGA 6 cut(s) 17, 603, 607, 652, 691, 739
MflI RGATCY 2 cut(s) 544, 792
MlyI GAGTC 4 cut(s) 107, 308, 378, 410
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 4 cut(s) 83, 317, 687, 690
MroXI GAANNNNTTC 4 cut(s) 360, 495, 534, 614
MseI TTAA 4 cut(s) 293, 450, 623, 714
MslI CAYNNNNRTG 2 cut(s) 33, 194
MspI CCGG 2 cut(s) 348, 676
MspR9I CCNGG 1 cut(s) 348
NciI CCSGG 1 cut(s) 348
NdeI CATATG 2 cut(s) 424, 744
NdeII GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
NlaIII CATG 6 cut(s) 38, 50, 182, 193, 242, 262
NmuCI GTSAC 1 cut(s) 802
NspV TTCGAA 1 cut(s) 254
PdmI GAANNNNTTC 4 cut(s) 360, 495, 534, 614
PfeI GAWTC 4 cut(s) 134, 298, 361, 705
PkrI GCNGC 2 cut(s) 702, 763
PleI GAGTC 4 cut(s) 107, 308, 378, 410
PpsI GAGTC 4 cut(s) 107, 308, 378, 410
PshBI ATTAAT 1 cut(s) 293
PsuI RGATCY 2 cut(s) 544, 792
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 33, 194
SaqAI TTAA 4 cut(s) 293, 450, 623, 714
SatI GCNGC 2 cut(s) 701, 762
Sau3AI GATC 7 cut(s) 94, 198, 263, 326, 466, 544, 792
SchI GAGTC 4 cut(s) 107, 308, 378, 410
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 1 cut(s) 637
SfuI TTCGAA 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 33, 194
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 346
TaiI ACGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 206, 254, 329
TfiI GAWTC 4 cut(s) 134, 298, 361, 705
Tru1I TTAA 4 cut(s) 293, 450, 623, 714
Tru9I TTAA 4 cut(s) 293, 450, 623, 714
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 2 cut(s) 700, 761
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 6 cut(s) 7, 165, 227, 246, 284, 311
VspI ATTAAT 1 cut(s) 293
XapI RAATTY 6 cut(s) 8, 14, 167, 250, 454, 736
XmnI GAANNNNTTC 4 cut(s) 360, 495, 534, 614
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.