Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

13652 .. 15302

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGCAGGAGATATTCGGGAAGAAGCATTCGAACATGGGATTAATGAAGCTGTTGTTATCCCAAAAATTAATGAATCAGCGAGAAGAAGACTCGGCAAGAGGATCGAAGCTGCAACCGCAATCCGGAGAAGAACCTGATTCACAAGCAAAGGCTTCTTGGACTCCAAAAACGACTTTAAAGCCTATTAGAGACTCTCCATATGTTCAGCAATACCTAGAGCTTCTTAAAAATTCAAAGAAAGATCGGCATATGATTGAAATTTTGGAATTATTTCCAAAGGTGCAAATTGACATTCCTTTGCTTGAAGCAATTCAGCAAGATCCGGCATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTAGTCTATCAAGAGAATGTCTTCCATTTGAAAGCACCTCCGGGCACAATACTTTGTCAAGCTCTCCCTACGGAAAGAGACCAAAACGGGTCTAGACTCCACAAGTCTATGGTCTACAACCAACTACCATGCGGTAAGGTAACGCCTCATAATGACAATGACCACTACGCGGCTTTGCGGTCAAGCTTTTCTCCTCCGAGAAAGAGTAAAGGGATCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010

Pfam Domains

Protein Families

Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

22.39

Weight (kDa)

9.4

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	542
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	4 cut(s)	119, 504, 542, 550
AclWI	GGATC	3 cut(s)	112, 317, 593
AcsI	RAATTY	2 cut(s)	232, 261
AfiI	CCNNNNNNNGG	2 cut(s)	125, 541
AgsI	TTSAA	5 cut(s)	237, 260, 308, 346, 403
AluBI	AGCT	5 cut(s)	52, 112, 223, 434, 558
AluI	AGCT	5 cut(s)	52, 112, 223, 434, 558
Alw26I	GTCTC	2 cut(s)	186, 444
AlwI	GGATC	3 cut(s)	112, 317, 593
Aor13HI	TCCGGA	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	232, 261
AseI	ATTAAT	2 cut(s)	44, 71
Asp700I	GAANNNNTTC	3 cut(s)	273, 312, 392
AsuC2I	CCSGG	1 cut(s)	414
AsuII	TTCGAA	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	96, 385
BbvI	GCAGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	186, 444
BfaI	CTAG	2 cut(s)	218, 465
BisI	GCNGC	2 cut(s)	113, 543
BlsI	GCNGC	2 cut(s)	114, 544
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
BpiI	GAAGAC	2 cut(s)	96, 385
Bpu14I	TTCGAA	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 541
BseAI	TCCGGA	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	125, 541
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	542
BsiSI	CCGG	3 cut(s)	126, 326, 413
BslI	CCNNNNNNNGG	2 cut(s)	125, 541
BsmAI	GTCTC	2 cut(s)	186, 444
BsmI	GAATGC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	104, 244, 322, 585
BspACI	CCGC	4 cut(s)	119, 504, 542, 550
BspEI	TCCGGA	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	542
BspPI	GGATC	3 cut(s)	112, 317, 593
BspT104I	TTCGAA	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	444
BssMI	GATC	4 cut(s)	104, 244, 322, 585
BstBI	TTCGAA	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	4 cut(s)	107, 247, 325, 588
BstMAI	GTCTC	2 cut(s)	186, 444
BstMBI	GATC	4 cut(s)	104, 244, 322, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	419
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	2 cut(s)	96, 385
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
CviAII	CATG	2 cut(s)	37, 501
CviJI	RGCY	8 cut(s)	52, 112, 155, 184, 223, 434, 545, 558
CviKI_1	RGCY	8 cut(s)	52, 112, 155, 184, 223, 434, 545, 558
DpnI	GATC	4 cut(s)	106, 246, 324, 587
DpnII	GATC	4 cut(s)	104, 244, 322, 585
DraI	TTTAAA	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	444
FaeI	CATG	2 cut(s)	40, 504
FaiI	YATR	9 cut(s)	38, 202, 204, 252, 254, 355, 482, 502, 522
FatI	CATG	2 cut(s)	36, 500
FauNDI	CATATG	2 cut(s)	202, 252
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	113, 543
Fsp4HI	GCNGC	2 cut(s)	113, 543
FspBI	CTAG	2 cut(s)	218, 465
GluI	GCNGC	2 cut(s)	113, 543
HapII	CCGG	3 cut(s)	126, 326, 413
Hin1II	CATG	2 cut(s)	40, 504
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	6 cut(s)	76, 92, 140, 163, 194, 468
HpaII	CCGG	3 cut(s)	126, 326, 413
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	4 cut(s)	19, 126, 383, 465
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	7, 115, 286, 335, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	40, 504
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	104, 244, 322, 585
LpnPI	CCDG	4 cut(s)	139, 150, 339, 426
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	218, 465
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	4 cut(s)	106, 246, 324, 587
MboI	GATC	4 cut(s)	104, 244, 322, 585
MboII	GAAGA	6 cut(s)	34, 98, 101, 143, 381, 385
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	6 cut(s)	68, 232, 261, 269, 288, 312
MlyI	GAGTC	4 cut(s)	86, 157, 188, 462
MnlI	CCTC	4 cut(s)	95, 420, 528, 576
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	3 cut(s)	273, 312, 392
MseI	TTAA	5 cut(s)	44, 71, 179, 228, 592
MspI	CCGG	3 cut(s)	126, 326, 413
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	414
NdeI	CATATG	2 cut(s)	202, 252
NdeII	GATC	4 cut(s)	104, 244, 322, 585
NlaIII	CATG	2 cut(s)	40, 504
NmeAIII	GCCGAG	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	32
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	3 cut(s)	273, 312, 392
PfeI	GAWTC	2 cut(s)	76, 140
PkrI	GCNGC	2 cut(s)	114, 544
PleI	GAGTC	4 cut(s)	86, 157, 188, 462
PpsI	GAGTC	4 cut(s)	86, 157, 188, 462
PshBI	ATTAAT	2 cut(s)	44, 71
PsuI	RGATCY	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	44, 71, 179, 228, 592
SatI	GCNGC	2 cut(s)	113, 543
Sau3AI	GATC	4 cut(s)	104, 244, 322, 585
SchI	GAGTC	4 cut(s)	86, 157, 188, 462
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	32
Sse9I	AATT	6 cut(s)	68, 232, 261, 269, 288, 312
SsiI	CCGC	4 cut(s)	119, 504, 542, 550
SspMI	CTAG	2 cut(s)	218, 465
StyD4I	CCNGG	1 cut(s)	412
TaqI	TCGA	2 cut(s)	32, 107
TasI	AATT	6 cut(s)	68, 232, 261, 269, 288, 312
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	76, 140
Tru1I	TTAA	5 cut(s)	44, 71, 179, 228, 592
Tru9I	TTAA	5 cut(s)	44, 71, 179, 228, 592
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	62, 89
TspGWI	ACGGA	1 cut(s)	458
VspI	ATTAAT	2 cut(s)	44, 71
XapI	RAATTY	2 cut(s)	232, 261
XbaI	TCTAGA	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	3 cut(s)	273, 312, 392
XspI	CTAG	2 cut(s)	218, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.