Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Forward (+)

18571359 .. 18583517

Gene Structure 12159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATCATCAATTTGAAGTGGACTCCGAGAATAAATCAAAAGATTCTCTAAAAGATGATGAAATCGGGATTGGCAAATTTGAGAAGCACGAGCAAATCATGGCTGTTATCACGTTGAGAAGTGGAAAAGAAGTTGGGAATAAAGTTCATGGTGCAGGAGATATTCGGGAAGAAGAATTCGAACATGGGATCAATGAAGCTGTTGCTATCCTAAAAATTAATGAATCAGCAGAAGAAGACTCAAGAAGAGGATCGAAGCCGCAACAAAGAATCCGGAGAAGAACCGATTTACGAGCAAAGGCTTCTTGGACTCCAAAAATGACTTTAAAGCCTATTAGAGACTCTCCATATGTTCAGCAATACCTAGAGCTTCTTAAAAATTCAAAGAAAGATCAGCCTATGATTGAAATTTTGGAATTATTTCCAAAGGTGCAAATTGACATTCCTTTGCTTGAAGCAATTCAGCAAGATCCAGCATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTATTCTATCAAGAGAATGTCTTCCATTTGAAAGTAGTATGTTTGAAGAATGATGCAAGAAAAAGTAATAGACCTTCTCACCGGAAGAAGCTAAAAAGGAGGAGGCTGCGAATCATTGTTAAACCTGAATGGAAGATTGGAAATTCACATGTGAGTAGGTTGTTTGCTGCTGGAATATCAAGGAAGCTGCTGTTTTGGATCTATCAAGTGACATTGATGGAAGAAACAAGTGTAAGCTCGAATGAATATAGAGGTGTCTTTAGCAACGGAAAGAAGAATAGATTTGCTATCGTGTTCGCATCTACCGCCTTTGTTAAATTGGAGAAAAGAATGATTTGGAGCTTAAAGTCAAACGCAGGATTGAAAAGGTGCTTGCTATCCCGAGCGTCCAGAATTGGCTCTGCTGTGCGTCAACTTCAAAGATTAAACTGTACCTTCTCAGAAGGAATTAGCAGGCAAGCCTTATACCATTGGAAAGATACGGATGCTAGCTTTCTGAAGAATTTTACGGAAGTGGATTCGCATTCTTGTGGAGGAATGGTGCAGTACCCATCTTCTCTCGGGTGGCACCATGTCCTTTGGGGGACATCAATCCTTGCGAGCATGTTTGCGGCAGGTATATGTGATCTCGTCACTTTTAGGGGATCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

390

Amino Acids

44.79

Weight (kDa)

9.81

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1124
AccB1I	GGYRCC	1 cut(s)	1086
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	3 cut(s)	260, 825, 1130
AclWI	GGATC	6 cut(s)	12, 197, 259, 464, 725, 1171
AcsI	RAATTY	6 cut(s)	77, 176, 379, 408, 661, 1021
AcuI	CTGAAG	1 cut(s)	1037
AfaI	GTAC	2 cut(s)	952, 1067
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	9 cut(s)	17, 384, 407, 455, 493, 550, 565, 883, 938
AjuI	GAANNNNNNNTTGG	4 cut(s)	54, 86, 639, 671
AluBI	AGCT	7 cut(s)	200, 370, 610, 706, 756, 861, 1011
AluI	AGCT	7 cut(s)	200, 370, 610, 706, 756, 861, 1011
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	6 cut(s)	12, 197, 259, 464, 725, 1171
Ama87I	CYCGRG	2 cut(s)	900, 1079
Aor13HI	TCCGGA	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	625, 686, 706
ApoI	RAATTY	6 cut(s)	77, 176, 379, 408, 661, 1021
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	3 cut(s)	420, 459, 539
AsuHPI	GGTGA	1 cut(s)	590
AsuII	TTCGAA	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	1007
AvaI	CYCGRG	2 cut(s)	900, 1079
BanI	GGYRCC	1 cut(s)	1086
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	243, 532
BbvI	GCAGC	3 cut(s)	612, 673, 693
BccI	CCATC	2 cut(s)	730, 1078
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	365, 1008
BfuAI	ACCTGC	1 cut(s)	1124
BisI	GCNGC	5 cut(s)	260, 626, 687, 707, 1131
BlsI	GCNGC	5 cut(s)	261, 627, 688, 708, 1132
BmeT110I	CYCGRG	2 cut(s)	900, 1079
BmiI	GGNNCC	1 cut(s)	1088
BmsI	GCATC	3 cut(s)	562, 827, 994
BmtI	GCTAGC	1 cut(s)	1011
BpiI	GAAGAC	2 cut(s)	243, 532
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	226
BsaWI	WCCGGW	2 cut(s)	273, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	1044, 1074
BseAI	TCCGGA	1 cut(s)	273
BseGI	GGATG	1 cut(s)	1009
BseMII	CTCAG	1 cut(s)	972
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	612, 673, 693
BsgI	GTGCAG	2 cut(s)	174, 1082
BshNI	GGYRCC	1 cut(s)	1086
BsiHKCI	CYCGRG	2 cut(s)	900, 1079
BsiSI	CCGG	2 cut(s)	274, 601
BslFI	GGGAC	1 cut(s)	1117
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	1117
BsmI	GAATGC	1 cut(s)	1042
BsoBI	CYCGRG	2 cut(s)	900, 1079
Bsp119I	TTCGAA	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
BspACI	CCGC	3 cut(s)	260, 825, 1130
BspCNI	CTCAG	1 cut(s)	971
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	1088
BspMI	ACCTGC	1 cut(s)	1124
BspOI	GCTAGC	1 cut(s)	1011
BspPI	GGATC	6 cut(s)	12, 197, 259, 464, 725, 1171
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	1086
BssMI	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	950
Bst6I	CTCTTC	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	5 cut(s)	893, 974, 978, 1009, 1120
BstDEI	CTNAG	1 cut(s)	958
BstF5I	GGATG	1 cut(s)	1009
BstKTI	GATC	8 cut(s)	7, 192, 254, 394, 472, 720, 1147, 1166
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
BstMWI	GCNNNNNNNGC	1 cut(s)	824
BstNSI	RCATGY	2 cut(s)	671, 1126
BstV1I	GCAGC	3 cut(s)	612, 673, 693
BstV2I	GAAGAC	2 cut(s)	243, 532
BstX2I	RGATCY	2 cut(s)	469, 717
BstYI	RGATCY	2 cut(s)	469, 717
BtsCI	GGATG	1 cut(s)	1009
BveI	ACCTGC	1 cut(s)	1124
Cac8I	GCNNGC	5 cut(s)	893, 974, 978, 1009, 1120
CseI	GACGC	2 cut(s)	894, 917
Csp6I	GTAC	2 cut(s)	951, 1066
CviAII	CATG	6 cut(s)	100, 149, 185, 668, 1091, 1123
CviQI	GTAC	2 cut(s)	951, 1066
DdeI	CTNAG	1 cut(s)	958
DpnI	GATC	8 cut(s)	6, 191, 253, 393, 471, 719, 1146, 1165
DpnII	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
DraI	TTTAAA	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	1037
Eco88I	CYCGRG	2 cut(s)	900, 1079
EcoRI	GAATTC	1 cut(s)	176
FaeI	CATG	6 cut(s)	103, 152, 188, 671, 1094, 1126
FaqI	GGGAC	1 cut(s)	1117
FatI	CATG	6 cut(s)	99, 148, 184, 667, 1090, 1122
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	260, 626, 687, 707, 1131
FokI	GGATG	1 cut(s)	1016
Fsp4HI	GCNGC	5 cut(s)	260, 626, 687, 707, 1131
FspBI	CTAG	2 cut(s)	365, 1008
GluI	GCNGC	5 cut(s)	260, 626, 687, 707, 1131
HapII	CCGG	2 cut(s)	274, 601
HgaI	GACGC	2 cut(s)	894, 917
Hin1II	CATG	6 cut(s)	103, 152, 188, 671, 1094, 1126
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HinfI	GANTC	9 cut(s)	23, 44, 224, 239, 270, 310, 341, 630, 1037
HpaII	CCGG	2 cut(s)	274, 601
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	22, 932
Hpy188I	TCNGA	3 cut(s)	28, 961, 1017
Hpy188III	TCNNGA	8 cut(s)	67, 167, 243, 274, 530, 900, 909, 1167
Hpy8I	GTNNAC	2 cut(s)	22, 932
HpyAV	CCTTC	4 cut(s)	487, 603, 956, 964
HpyCH4III	ACNGT	1 cut(s)	950
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	6 cut(s)	155, 433, 482, 504, 575, 1063
HpyF10VI	GCNNNNNNNGC	1 cut(s)	824
HpyF3I	CTNAG	1 cut(s)	958
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	103, 152, 188, 671, 1094, 1126
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
LmnI	GCTCC	1 cut(s)	858
Lsp1109I	GCAGC	3 cut(s)	612, 673, 693
LweI	GCATC	3 cut(s)	562, 827, 994
MaeI	CTAG	2 cut(s)	365, 1008
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	727, 1150
MalI	GATC	8 cut(s)	6, 191, 253, 393, 471, 719, 1146, 1165
MboI	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
MflI	RGATCY	2 cut(s)	469, 717
MlyI	GAGTC	4 cut(s)	17, 233, 304, 335
MnlI	CCTC	5 cut(s)	242, 612, 615, 764, 1046
MroI	TCCGGA	1 cut(s)	273
MroXI	GAANNNNTTC	3 cut(s)	420, 459, 539
MseI	TTAA	7 cut(s)	219, 326, 375, 639, 834, 863, 944
MslI	CAYNNNNRTG	1 cut(s)	1047
MspI	CCGG	2 cut(s)	274, 601
Mva1269I	GAATGC	1 cut(s)	1042
MwoI	GCNNNNNNNGC	1 cut(s)	824
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
NheI	GCTAGC	1 cut(s)	1007
NlaIII	CATG	6 cut(s)	103, 152, 188, 671, 1094, 1126
NlaIV	GGNNCC	1 cut(s)	1088
NmuCI	GTSAC	2 cut(s)	727, 1150
NspI	RCATGY	2 cut(s)	671, 1126
NspV	TTCGAA	1 cut(s)	180
PciI	ACATGT	1 cut(s)	667
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	3 cut(s)	420, 459, 539
PfeI	GAWTC	5 cut(s)	44, 224, 270, 630, 1037
PkrI	GCNGC	5 cut(s)	261, 627, 688, 708, 1132
PleI	GAGTC	4 cut(s)	17, 233, 304, 335
PpsI	GAGTC	4 cut(s)	17, 233, 304, 335
PscI	ACATGT	1 cut(s)	667
PshBI	ATTAAT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	1088
PsuI	RGATCY	2 cut(s)	469, 717
RsaI	GTAC	2 cut(s)	952, 1067
RsaNI	GTAC	2 cut(s)	951, 1066
RseI	CAYNNNNRTG	1 cut(s)	1047
SaqAI	TTAA	7 cut(s)	219, 326, 375, 639, 834, 863, 944
SatI	GCNGC	5 cut(s)	260, 626, 687, 707, 1131
Sau3AI	GATC	8 cut(s)	4, 189, 251, 391, 469, 717, 1144, 1163
SchI	GAGTC	4 cut(s)	17, 233, 304, 335
SfaNI	GCATC	3 cut(s)	562, 827, 994
SfuI	TTCGAA	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	1047
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
SsiI	CCGC	3 cut(s)	260, 825, 1130
SspMI	CTAG	2 cut(s)	365, 1008
TaaI	ACNGT	1 cut(s)	950
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	180, 254, 758
TauI	GCSGC	2 cut(s)	262, 1133
TfiI	GAWTC	5 cut(s)	44, 224, 270, 630, 1037
Tru1I	TTAA	7 cut(s)	219, 326, 375, 639, 834, 863, 944
Tru9I	TTAA	7 cut(s)	219, 326, 375, 639, 834, 863, 944
TseFI	GTSAC	2 cut(s)	727, 1150
TseI	GCWGC	3 cut(s)	625, 686, 706
Tsp45I	GTSAC	2 cut(s)	727, 1150
TspDTI	ATGAA	5 cut(s)	75, 137, 210, 237, 777
TspGWI	ACGGA	3 cut(s)	801, 1016, 1043
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	6 cut(s)	77, 176, 379, 408, 661, 1021
XceI	RCATGY	2 cut(s)	671, 1126
XmnI	GAANNNNTTC	3 cut(s)	420, 459, 539
XspI	CTAG	2 cut(s)	365, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.