Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Forward (+)

57816548 .. 57819776

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATCATCAATTTGAAGTGGACTCCGAGAATGAATCAAAAGATTCTCTAAAAGATGATGAAATCGGGATAGGCAAATTTGAGAAGCACGAGCAAATCATGGCCGTTATCACGTTGAGAAGTGGAAAAGAAGTTGGGAATAAAGTTCATGGTGCAGGAGATATTCGGGAAGAAGCATTCGAACATGGGATTAATGAAGCTGTTGTTATCCCAAAAATTAATGAATCAGAGAAGAAGACTCAAGCAAGAGGATCGAAGCCGCAACCGCAATCCCGAAGAAGAACTGATTCACAAGCAAAGGCTTCTTGGACTCCAAAAATGACTTTAAAGCCTATTAGAGACTCTCCATATGTGCAAATTGACATTCCTTTGCTTGAAGCAATTCAGCAAGATCCAACATTTGCACAAGGTTTGAAGGATTTATGCACCAACAAAAGAAGATTAGTCTATCAAGAGAATGTCTTCCATTTGAAAGCAGTATATTTGAAGAATGATGCAAGACAAAGTAATAGACCTTCTCACCGGAAGAAGCTAAAAAGGAGGAGGCTGCGAATCATTGTTAAACCCGAATGGAAGATTAGAAATTCACATGTGAGTAGGTTGTTTGCTGCTGGAATATCAAGGAAGCTGCTGTTTTGGATCTATCAAGTGACATTGATAGAAGAAACAAGTGCAAGCTCGAATGAATATGGAGGTGTCTTTAGCAACGGAAAGAAGAATAGATTTGCCATCATTCTTACTGATCCATTCCCTCCATTTCATCTCGGTTGCCCGCCGACATGTCGGTTTTCGACTTGCCACCTCAACGCCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

271

Amino Acids

31.03

Weight (kDa)

9.67

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	260, 266, 773
AclWI	GGATC	5 cut(s)	12, 259, 386, 647, 737
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	77, 583
AflIII	ACRYGT	2 cut(s)	589, 779
AgsI	TTSAA	5 cut(s)	17, 377, 415, 472, 487
AluBI	AGCT	4 cut(s)	200, 532, 628, 678
AluI	AGCT	4 cut(s)	200, 532, 628, 678
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	5 cut(s)	12, 259, 386, 647, 737
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	547, 608, 628
ApoI	RAATTY	2 cut(s)	77, 583
AseI	ATTAAT	2 cut(s)	192, 219
Asp700I	GAANNNNTTC	3 cut(s)	286, 381, 461
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	242, 454
BbvI	GCAGC	3 cut(s)	534, 595, 615
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BcoDI	GTCTC	1 cut(s)	333
BisI	GCNGC	4 cut(s)	260, 548, 609, 629
BlsI	GCNGC	4 cut(s)	261, 549, 610, 630
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	2 cut(s)	242, 454
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	813
BsaWI	WCCGGW	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	534, 595, 615
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	4, 251, 391, 639, 742
BspACI	CCGC	3 cut(s)	260, 266, 773
BspANI	GGCC	1 cut(s)	104
BspPI	GGATC	5 cut(s)	12, 259, 386, 647, 737
BspT104I	TTCGAA	1 cut(s)	180
BssMI	GATC	5 cut(s)	4, 251, 391, 639, 742
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	676, 773
BstKTI	GATC	5 cut(s)	7, 254, 394, 642, 745
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	5 cut(s)	4, 251, 391, 639, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNSI	RCATGY	2 cut(s)	593, 783
BstV1I	GCAGC	3 cut(s)	534, 595, 615
BstV2I	GAAGAC	2 cut(s)	242, 454
BstX2I	RGATCY	2 cut(s)	391, 639
BstYI	RGATCY	2 cut(s)	391, 639
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	676, 773
CviAII	CATG	5 cut(s)	100, 149, 185, 590, 780
CviJI	RGCY	9 cut(s)	104, 200, 259, 302, 331, 532, 547, 628, 678
CviKI_1	RGCY	9 cut(s)	104, 200, 259, 302, 331, 532, 547, 628, 678
DpnI	GATC	5 cut(s)	6, 253, 393, 641, 744
DpnII	GATC	5 cut(s)	4, 251, 391, 639, 742
DraI	TTTAAA	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	102
FaeI	CATG	5 cut(s)	103, 152, 188, 593, 783
FatI	CATG	5 cut(s)	99, 148, 184, 589, 779
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	260, 548, 609, 629
Fsp4HI	GCNGC	4 cut(s)	260, 548, 609, 629
GluI	GCNGC	4 cut(s)	260, 548, 609, 629
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	523
Hin1II	CATG	5 cut(s)	103, 152, 188, 593, 783
HinfI	GANTC	9 cut(s)	23, 35, 44, 224, 238, 287, 310, 341, 552
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	28, 229
Hpy188III	TCNNGA	4 cut(s)	67, 167, 273, 452
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	409, 525
HpyCH4IV	ACGT	2 cut(s)	113, 812
HpyCH4V	TGCA	6 cut(s)	155, 355, 404, 426, 497, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpySE526I	ACGT	2 cut(s)	113, 812
Hsp92II	CATG	5 cut(s)	103, 152, 188, 593, 783
Kzo9I	GATC	5 cut(s)	4, 251, 391, 639, 742
LpnPI	CCDG	3 cut(s)	141, 536, 597
Lsp1109I	GCAGC	3 cut(s)	534, 595, 615
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	2 cut(s)	113, 812
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	5 cut(s)	6, 253, 393, 641, 744
MboI	GATC	5 cut(s)	4, 251, 391, 639, 742
MflI	RGATCY	2 cut(s)	391, 639
MluCI	AATT	6 cut(s)	11, 77, 216, 357, 381, 583
MlyI	GAGTC	4 cut(s)	17, 232, 304, 335
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	242, 534, 537, 686, 762, 812
MroXI	GAANNNNTTC	3 cut(s)	286, 381, 461
MseI	TTAA	4 cut(s)	192, 219, 326, 561
MspI	CCGG	1 cut(s)	523
Mva1269I	GAATGC	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	265
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	4, 251, 391, 639, 742
NlaIII	CATG	5 cut(s)	103, 152, 188, 593, 783
NmuCI	GTSAC	1 cut(s)	649
NspI	RCATGY	2 cut(s)	593, 783
NspV	TTCGAA	1 cut(s)	180
PciI	ACATGT	2 cut(s)	589, 779
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	3 cut(s)	286, 381, 461
PfeI	GAWTC	5 cut(s)	35, 44, 224, 287, 552
PkrI	GCNGC	4 cut(s)	261, 549, 610, 630
PleI	GAGTC	4 cut(s)	17, 232, 304, 335
PpsI	GAGTC	4 cut(s)	17, 232, 304, 335
Ppu21I	YACGTR	1 cut(s)	813
PscI	ACATGT	2 cut(s)	589, 779
PshBI	ATTAAT	2 cut(s)	192, 219
PsuI	RGATCY	2 cut(s)	391, 639
SaqAI	TTAA	4 cut(s)	192, 219, 326, 561
SatI	GCNGC	4 cut(s)	260, 548, 609, 629
Sau3AI	GATC	5 cut(s)	4, 251, 391, 639, 742
SchI	GAGTC	4 cut(s)	17, 232, 304, 335
SfaNI	GCATC	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	6 cut(s)	11, 77, 216, 357, 381, 583
SsiI	CCGC	3 cut(s)	260, 266, 773
TaiI	ACGT	2 cut(s)	116, 815
TaqI	TCGA	4 cut(s)	180, 254, 680, 791
TasI	AATT	6 cut(s)	11, 77, 216, 357, 381, 583
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	5 cut(s)	35, 44, 224, 287, 552
Tru1I	TTAA	4 cut(s)	192, 219, 326, 561
Tru9I	TTAA	4 cut(s)	192, 219, 326, 561
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	3 cut(s)	547, 608, 628
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	7 cut(s)	48, 75, 137, 210, 237, 699, 749
TspGWI	ACGGA	1 cut(s)	723
VspI	ATTAAT	2 cut(s)	192, 219
XapI	RAATTY	2 cut(s)	77, 583
XceI	RCATGY	2 cut(s)	593, 783
XmnI	GAANNNNTTC	3 cut(s)	286, 381, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.