Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000319.1

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

39490 .. 40286

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000319.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggcacgtggcgcatggcggctagtcggcggtgatctgggggtaatccagggctcaggcggtagcctgcttggctgttttcccggagtcccctactccccggctaagatagacctccgtttggtcgatatattgtttgttgagaggggtgcactaagcagagtgtgttgggtagcgagcccaaactttggtacccgagtggcgaaggtcaacgtgcctaatcagggttttcgtagactgttgacgtgtccccgtgtctcggagggacgtagcctgactgtaacgtcacatagcggtcgtcttcaagacaagtcattgccttgggaatcgccgttggcggaagtccctcctctactagtaagtggcaagcagtgttgcggggaccaacttggtggtggtctagtgagcggagttgtgctcagttgcaagatgaaaaaagggagaagttctgctagcagagttgagcttagcagagactgtctcacttgcaagatgaaaagggagaatttccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.36

Weight (kDa)

9.94

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	8 cut(s)	19, 30, 60, 294, 338, 378, 408, 511
AcsI	RAATTY	1 cut(s)	505
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	4 cut(s)	121, 188, 224, 259
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	305
AhlI	ACTAGT	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw21I	GWGCWC	2 cut(s)	154, 420
Alw26I	GTCTC	3 cut(s)	262, 468, 485
Alw44I	GTGCAC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	2 cut(s)	84, 101
AsuHPI	GGTGA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	4 cut(s)	175, 183, 208, 216
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	56, 182
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	154, 420
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	84, 101
BcoDI	GTCTC	3 cut(s)	262, 468, 485
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	5 cut(s)	23, 356, 401, 453, 514
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	3 cut(s)	50, 84, 101
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	193, 383
BmrFI	CCNGG	3 cut(s)	50, 84, 101
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	293
BplI	GAGNNNNNCTC	4 cut(s)	402, 434, 465, 497
Bpu10I	CCTNAGC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	84, 101
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	49, 99, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 188, 224, 259
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	49, 99, 320
BseLI	CCNNNNNNNGG	4 cut(s)	121, 188, 224, 259
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	69, 433
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	154, 420
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	84, 101
BslFI	GGGAC	5 cut(s)	74, 234, 279, 329, 395
BslI	CCNNNNNNNGG	4 cut(s)	121, 188, 224, 259
BsmAI	GTCTC	3 cut(s)	262, 468, 485
BsmFI	GGGAC	5 cut(s)	74, 234, 279, 329, 395
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	4 cut(s)	56, 154, 182, 420
Bsp143I	GATC	1 cut(s)	34
Bsp1720I	GCTNAGC	1 cut(s)	467
BspACI	CCGC	8 cut(s)	19, 30, 60, 294, 338, 378, 408, 511
BspCNI	CTCAG	2 cut(s)	68, 432
BspLI	GGNNCC	2 cut(s)	193, 383
BspOI	GCTAGC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	49, 99, 320
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	240, 280, 479
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	4 cut(s)	68, 178, 368, 454
BstDEI	CTNAG	5 cut(s)	55, 105, 155, 419, 467
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	3 cut(s)	262, 468, 485
BstMBI	GATC	1 cut(s)	34
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 72
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	48, 82, 99
BstSLI	GKGCMC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	4 cut(s)	68, 178, 368, 454
CaiI	CAGNNNCTG	1 cut(s)	477
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	8 cut(s)	22, 54, 66, 75, 104, 180, 273, 466
CviKI_1	RGCY	8 cut(s)	22, 54, 66, 75, 104, 180, 273, 466
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	5 cut(s)	55, 105, 155, 419, 467
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	2 cut(s)	56, 182
Eco47I	GGWCC	1 cut(s)	382
Eco72I	CACGTG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	2 cut(s)	56, 182
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	18
FaiI	YATR	3 cut(s)	16, 131, 291
FaqI	GGGAC	5 cut(s)	74, 234, 279, 329, 395
FatI	CATG	1 cut(s)	14
FauI	CCCGC	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	56, 182
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	5 cut(s)	23, 356, 401, 453, 514
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	2 cut(s)	84, 101
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	2 cut(s)	211, 243
HindII	GTYRAC	2 cut(s)	211, 243
HinfI	GANTC	2 cut(s)	87, 326
HpaII	CCGG	2 cut(s)	84, 101
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	4 cut(s)	152, 211, 236, 243
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	4 cut(s)	152, 211, 236, 243
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	3 cut(s)	240, 280, 479
HpyCH4IV	ACGT	5 cut(s)	7, 213, 245, 268, 284
HpyCH4V	TGCA	3 cut(s)	152, 426, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 72
HpyF3I	CTNAG	5 cut(s)	55, 105, 155, 419, 467
HpySE526I	ACGT	5 cut(s)	7, 213, 245, 268, 284
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	12
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	23, 35, 42, 62, 80, 97, 114, 209, 287
MaeI	CTAG	5 cut(s)	23, 356, 401, 453, 514
MaeII	ACGT	5 cut(s)	7, 213, 245, 268, 284
MaeIII	GTNAC	2 cut(s)	280, 285
MalI	GATC	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	4 cut(s)	56, 154, 182, 420
MluCI	AATT	1 cut(s)	505
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	125, 138, 256, 357, 360
MspI	CCGG	2 cut(s)	84, 101
MspR9I	CCNGG	3 cut(s)	50, 84, 101
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	11, 72
NciI	CCSGG	2 cut(s)	84, 101
NdeII	GATC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	2 cut(s)	193, 383
NmuCI	GTSAC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	95
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	48
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	193, 383
PspPI	GGNCC	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	477
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	50, 84, 101
SduI	GDGCHC	4 cut(s)	56, 154, 182, 420
SetI	ASST	8 cut(s)	10, 117, 210, 216, 248, 271, 287, 468
SinI	GGWCC	1 cut(s)	382
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	8 cut(s)	19, 30, 60, 294, 338, 378, 408, 511
SspMI	CTAG	5 cut(s)	23, 356, 401, 453, 514
StyD4I	CCNGG	3 cut(s)	48, 82, 99
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	3 cut(s)	240, 280, 479
TaiI	ACGT	5 cut(s)	10, 216, 248, 271, 287
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	505
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	446, 509
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	5 cut(s)	23, 356, 401, 453, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.