Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012570

Physical Location & Seq

Genomic Coordinates Reverse (-)

53013420 .. 53022257

Gene Structure 8838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTTCTCCGAAAAGAGCCCATCATCATCTTCGAACCGGAGCGTCGGCACTCCGCTCGGCGTTGGTAGTCCGACCCTCCTCCCCTCGCTTCCCTCCCGGCGGCATCCCCACCTCGGGTGCCCGGCGCTGCATCGGGATCGCGCTAGATCTAAGCAGCGGTGTCGCCGAGCTGGTTGCTAAGCCGACCTCACACTCCAATGGCACTGCTTCAATCATTATCGGTAGCTTACTACTAGACTCCGCATCATCTTTGGTCCTTCGGGCACCATATTTTTTCAAACTCTCCCCAAGGGAAAGAGACCTAAACGGGTCTAGACTTCACGAGTCTATGGTCCACAACCAACCGCCAAGCGGTAAGGCAACGCCTCATAATGACAATGACCGCTACGCGGCATTACGATCAAGCTTTTCTCCTCCGGAAAGAGTAAAGGGACTGGTTAAAGCAACCCACGACAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

154

Amino Acids

16.44

Weight (kDa)

10.87

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012570)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29683 FvH4_1g29684 FvH4_4g02083
pyrus_communis	pycom12g06170
rosa_chinensis	RchiOBHm_Chr2g0131801
rosa_multiflora	Rmu_sc0000319.1_g000006 Rmu_sc0001296.1_g000010 Rmu_sc0002563.1_g000042 Rmu_sc0004717.1_g000001 Rmu_sc0023614.1_g000002
rosa_roxburghii	Rroxscaffold_1G00045600 Rroxscaffold_2G00076110 Rroxscaffold_3G00230440 Rroxscaffold_5G00347270 Rroxscaffold_5G00366690 Rroxscaffold_5G00385080 Rroxscaffold_7G00167830 Rroxscaffold_7G00203970 Rroxscaffold_7G00207850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 265
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	2 cut(s)	143, 392
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	8 cut(s)	55, 102, 159, 243, 347, 354, 385, 392
AclWI	GGATC	1 cut(s)	146
AfiI	CCNNNNNNNGG	5 cut(s)	101, 115, 116, 353, 391
AgsI	TTSAA	2 cut(s)	213, 280
AluBI	AGCT	3 cut(s)	172, 228, 408
AluI	AGCT	3 cut(s)	172, 228, 408
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	129, 156
AspLEI	GCGC	2 cut(s)	129, 145
AspS9I	GGNCC	2 cut(s)	256, 334
AsuC2I	CCSGG	2 cut(s)	99, 124
AsuII	TTCGAA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	256, 334
BaeGI	GKGCMC	2 cut(s)	124, 268
BanI	GGYRCC	2 cut(s)	119, 265
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	116, 168
BccI	CCATC	1 cut(s)	30
BcgI	CGANNNNNNTGC	8 cut(s)	39, 73, 121, 145, 155, 158, 179, 192
BcnI	CCSGG	2 cut(s)	99, 124
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	146, 236, 315
BfoI	RGCGCY	1 cut(s)	130
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	4 cut(s)	103, 130, 157, 393
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	4 cut(s)	104, 131, 158, 394
Bme1390I	CCNGG	2 cut(s)	99, 124
Bme18I	GGWCC	2 cut(s)	256, 334
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	256, 334
BmiI	GGNNCC	2 cut(s)	121, 267
BmrFI	CCNGG	2 cut(s)	99, 124
BmsI	GCATC	3 cut(s)	114, 141, 254
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	99, 124
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	114, 290
BsaWI	WCCGGW	2 cut(s)	38, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 115, 116, 353, 391
Bse1I	ACTGG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	114, 290
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	5 cut(s)	101, 115, 116, 353, 391
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	70, 405
BseSI	GKGCMC	2 cut(s)	124, 268
BseXI	GCAGC	2 cut(s)	116, 168
Bsh1236I	CGCG	2 cut(s)	143, 392
BshNI	GGYRCC	2 cut(s)	119, 265
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	4 cut(s)	39, 99, 124, 419
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	5 cut(s)	101, 115, 116, 353, 391
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	22, 124, 268
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	138, 148, 401
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	8 cut(s)	55, 102, 159, 243, 347, 354, 385, 392
BspEI	TCCGGA	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	143, 392
BspLI	GGNNCC	2 cut(s)	121, 267
BspPI	GGATC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	119, 265
BspTNI	GGTCTC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	114, 290
BssMI	GATC	3 cut(s)	138, 148, 401
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	152, 180
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	143, 392
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 145
BstKTI	GATC	3 cut(s)	141, 151, 404
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	138, 148, 401
BstSCI	CCNGG	2 cut(s)	97, 122
BstSLI	GKGCMC	2 cut(s)	124, 268
BstUI	CGCG	2 cut(s)	143, 392
BstV1I	GCAGC	2 cut(s)	116, 168
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
CfoI	GCGC	2 cut(s)	129, 145
Cfr13I	GGNCC	2 cut(s)	256, 334
CseI	GACGC	1 cut(s)	33
CviJI	RGCY	6 cut(s)	5, 20, 172, 184, 228, 408
CviKI_1	RGCY	6 cut(s)	5, 20, 172, 184, 228, 408
DdeI	CTNAG	2 cut(s)	152, 180
DpnI	GATC	3 cut(s)	140, 150, 403
DpnII	GATC	3 cut(s)	138, 148, 401
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	294
Eco47I	GGWCC	2 cut(s)	256, 334
Eco88I	CYCGRG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	290
FaiI	YATR	3 cut(s)	271, 332, 372
FaqI	GGGAC	1 cut(s)	447
Fnu4HI	GCNGC	4 cut(s)	103, 130, 157, 393
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	103, 130, 157, 393
FspBI	CTAG	3 cut(s)	146, 236, 315
GlaI	GCGC	2 cut(s)	128, 144
GluI	GCNGC	4 cut(s)	103, 130, 157, 393
HaeII	RGCGCY	1 cut(s)	130
HapII	CCGG	4 cut(s)	39, 99, 124, 419
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	2 cut(s)	129, 145
Hin6I	GCGC	2 cut(s)	127, 143
HinP1I	GCGC	2 cut(s)	127, 143
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	2 cut(s)	239, 326
HpaII	CCGG	4 cut(s)	39, 99, 124, 419
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	12, 74
Hpy188III	TCNNGA	4 cut(s)	136, 315, 323, 419
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	152, 180
HspAI	GCGC	2 cut(s)	127, 143
Kpn2I	TCCGGA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	138, 148, 401
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	52, 112, 137, 158, 422, 432
Lsp1109I	GCAGC	2 cut(s)	116, 168
LweI	GCATC	3 cut(s)	114, 141, 254
MaeI	CTAG	3 cut(s)	146, 236, 315
MalI	GATC	3 cut(s)	140, 150, 403
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	3 cut(s)	138, 148, 401
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	3 cut(s)	22, 124, 268
MlyI	GAGTC	2 cut(s)	233, 335
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	8 cut(s)	88, 91, 96, 105, 124, 199, 378, 426
MroI	TCCGGA	1 cut(s)	418
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	39, 99, 124, 419
MspR9I	CCNGG	2 cut(s)	99, 124
MvnI	CGCG	2 cut(s)	143, 392
NciI	CCSGG	2 cut(s)	99, 124
NdeII	GATC	3 cut(s)	138, 148, 401
NlaIV	GGNNCC	2 cut(s)	121, 267
NmeAIII	GCCGAG	2 cut(s)	38, 193
NspV	TTCGAA	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	104, 131, 158, 394
PleI	GAGTC	2 cut(s)	233, 334
PpsI	GAGTC	2 cut(s)	233, 334
PspN4I	GGNNCC	2 cut(s)	121, 267
PspPI	GGNCC	2 cut(s)	256, 334
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	4 cut(s)	103, 130, 157, 393
Sau3AI	GATC	3 cut(s)	138, 148, 401
Sau96I	GGNCC	2 cut(s)	256, 334
SchI	GAGTC	2 cut(s)	233, 335
ScrFI	CCNGG	2 cut(s)	99, 124
SduI	GDGCHC	3 cut(s)	22, 124, 268
SetI	ASST	6 cut(s)	116, 174, 191, 230, 306, 410
SfaNI	GCATC	3 cut(s)	114, 141, 254
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	2 cut(s)	256, 334
SmiMI	CAYNNNNRTG	1 cut(s)	198
SsiI	CCGC	8 cut(s)	55, 102, 159, 243, 347, 354, 385, 392
SspMI	CTAG	3 cut(s)	146, 236, 315
StyD4I	CCNGG	2 cut(s)	97, 122
StyI	CCWWGG	1 cut(s)	290
TaqI	TCGA	1 cut(s)	34
TauI	GCSGC	2 cut(s)	105, 395
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	129, 156
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	256, 334
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	3 cut(s)	146, 236, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.