FvH4_2g08480

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006913
Physical Location & Seq
Reverse (-)
7406881 .. 7409596
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08480.t1

Sequence Viewer

Length: 1419 bp
ATGGGCTTTCGATTCATCAGTTTCTTCTACATTCTGTTCGTAGTGTGTCGTGACGCCAATGGAGCAAGGAATGTATTCAAACAGGAGGGAAAAGAACAAAATGCTCCATACATAACTAGTTATGGAACCAAAGAAGGCACACAAGAAGTCGAAGCTCCTTACATAACTCAGTACGGTTCAAAAGAAGGCAATAAGGTGGATGAGGTCGAAGCTCCTTACGTAACTGGTTACATTTCTGCGCAAGGCAACCCCAAAGAAACAGAGACGCCATACATCGCACAAGGCAGGAAGGGCAGAAAGGAAGTAGAGGCTCCTTACATCACTGGTTACATTTCTGCAGAAGGTGCAAAGAGGTCAGAAACTGTAGAGATACCATACATAACGCAATATGGTGACAAAGAGGCTTCCTACATAACCCAGGATGGCACCAAAGAAGGCACACTGGAGTCGACAGATGTAGAAGCGCCTTACATAACGGGGTACATTTCTGCACAAGGCACAAAGAATGTAGAAGCACCTTACCTAGTCGGATACAATTCTGCGCAAGGCACAAAGAGCAAAAAAGAAGTAGAGGCACCTTACATTACCGGATACATTTCTGCACATGGCGCAAAGAACTGTGGACATCAGAAGCATGTACATCCACCTTCCCAAAATGGAGCAAAGGAGTCACCTATGGAACATCAACATCATGACCATGCACATTCATCATCTCCCATGGATCACACCGAGGCACTCAAGCAAGGCTTATTCACTTTCGAGGATTTCTACAAAGGGAATGCACTGCCACTCAACTTTCCCAAACAAGAGCATTCTCGTTTCTTGCCTAAAGAAACAGCCGATTCCATCCCATTCTCAACATCACAGCTCCCACACCTTCTCCAACTCTTCTCAACCCCACGCGACTCTCGTGAAGCAAAACACATGGCCTGGACACTCGACCAGTGCGAGCTCAAACCCATCAAGGGGGAGACCAAGTTCTGTGCTACTTCTCTAGAATCCATGACAGAATTTATTCAAAAAATCATTGGTTCAGGGATCAGCTTCAATATTCTCTCTACCACCCTCCCAGAAACCTCTACTTCCATCACACAAAAATACACCATCTTGGAAGAGCCCAAACAAGTCATAGCTTCAAAAATGGTCTTCTGCCACCCGGTGCCTTATCCTTACGCAGTTTTCTTCTGCCACCACTTTGAGAAGGACACCAAGTTCTTCAAGGTTTCACTGCGAGGAGAGAATGGAGATAAGATCGAAGCTGTAGCTGTTTGTCACATGGACACTTCTGATTGGGACCCTAACCATGGTTTGTTTCGCTTATTGGGAATCAAAGCCGGTGCTTCTTCGCCAGTGTGCCATTTCTTCCCTGCAAATCATCTAGTTTGGATTCCATCATCACCAACAACAACAATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

473

Amino Acids

52.65

Weight (kDa)

6.14

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 251 - 463 9.7e-74 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 240, 543
AccB1I GGYRCC 3 cut(s) 425, 574, 1159
AccI GTMKAC 1 cut(s) 449
AccII CGCG 1 cut(s) 903
AclWI GGATC 2 cut(s) 729, 1046
AcsI RAATTY 1 cut(s) 1010
AcyI GRCGYC 2 cut(s) 54, 266
AdeI CACNNNGTG 1 cut(s) 1159
AfaI GTAC 3 cut(s) 173, 482, 639
AfiI CCNNNNNNNGG 3 cut(s) 965, 966, 1304
AgsI TTSAA 6 cut(s) 79, 180, 1019, 1048, 1137, 1219
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 2 cut(s) 417, 929
AloI GAACNNNNNNTCC 4 cut(s) 962, 994, 1196, 1228
AluBI AGCT 8 cut(s) 155, 212, 868, 952, 1044, 1133, 1259, 1265
AluI AGCT 8 cut(s) 155, 212, 868, 952, 1044, 1133, 1259, 1265
Alw21I GWGCWC 1 cut(s) 954
Alw26I GTCTC 2 cut(s) 257, 965
AlwI GGATC 2 cut(s) 729, 1046
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 927
ApoI RAATTY 1 cut(s) 1010
Asp700I GAANNNNTTC 2 cut(s) 74, 1014
AspLEI GCGC 4 cut(s) 241, 466, 544, 611
AspS9I GGNCC 1 cut(s) 1294
AsuC2I CCSGG 1 cut(s) 1157
AsuHPI GGTGA 3 cut(s) 404, 663, 1389
AvaII GGWCC 1 cut(s) 1294
BanI GGYRCC 3 cut(s) 425, 574, 1159
BanII GRGCYC 2 cut(s) 954, 1119
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 1138
Bbv12I GWGCWC 1 cut(s) 954
BccI CCATC 6 cut(s) 416, 854, 968, 1094, 1112, 1399
BciT130I CCWGG 2 cut(s) 419, 931
BciVI GTATCC 2 cut(s) 524, 584
BcnI CCSGG 1 cut(s) 1157
BcoDI GTCTC 2 cut(s) 257, 965
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 4 cut(s) 117, 524, 995, 1379
BfmI CTRYAG 3 cut(s) 336, 363, 1260
BfoI RGCGCY 1 cut(s) 467
BfuI GTATCC 2 cut(s) 524, 584
Bme1390I CCNGG 3 cut(s) 419, 931, 1157
Bme18I GGWCC 1 cut(s) 1294
BmgT120I GGNCC 1 cut(s) 1294
BmiI GGNNCC 7 cut(s) 127, 312, 427, 576, 1161, 1295, 1296
BmrFI CCNGG 3 cut(s) 419, 931, 1157
BpiI GAAGAC 1 cut(s) 1138
BpmI CTGGAG 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 1 cut(s) 1157
BsaAI YACGTR 1 cut(s) 220
BsaHI GRCGYC 2 cut(s) 54, 266
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 4 cut(s) 417, 717, 729, 1303
BsaWI WCCGGW 1 cut(s) 587
BsaXI ACNNNNNCTCC 4 cut(s) 864, 894, 962, 992
Bsc4I CCNNNNNNNGG 3 cut(s) 965, 966, 1304
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 5 cut(s) 229, 328, 447, 943, 1349
BseBI CCWGG 2 cut(s) 419, 931
BseDI CCNNGG 4 cut(s) 417, 717, 729, 1303
BseGI GGATG 4 cut(s) 205, 427, 640, 846
BseLI CCNNNNNNNGG 3 cut(s) 965, 966, 1304
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 5 cut(s) 229, 328, 447, 943, 1349
BseRI GAGGAG 1 cut(s) 1248
BsgI GTGCAG 2 cut(s) 474, 585
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 1 cut(s) 929
BshNI GGYRCC 3 cut(s) 425, 574, 1159
BsiHKAI GWGCWC 1 cut(s) 954
BsiSI CCGG 3 cut(s) 588, 1157, 1335
BslFI GGGAC 1 cut(s) 1307
BslI CCNNNNNNNGG 3 cut(s) 965, 966, 1304
BsmAI GTCTC 2 cut(s) 257, 965
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 1307
BsmI GAATGC 2 cut(s) 784, 811
BsnI GGCC 1 cut(s) 929
Bso31I GGTCTC 1 cut(s) 965
Bsp1286I GDGCHC 2 cut(s) 954, 1119
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 3 cut(s) 721, 1038, 1251
Bsp19I CCATGG 2 cut(s) 717, 1303
BspANI GGCC 1 cut(s) 929
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 7 cut(s) 127, 312, 427, 576, 1161, 1295, 1296
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 729, 1046
BspQI GCTCTTC 1 cut(s) 1107
BspT107I GGYRCC 3 cut(s) 425, 574, 1159
BspTNI GGTCTC 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 1334
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 5 cut(s) 229, 328, 447, 943, 1349
BssAI RCCGGY 1 cut(s) 1334
BssECI CCNNGG 4 cut(s) 417, 717, 729, 1303
BssMI GATC 3 cut(s) 721, 1038, 1251
BssNI GRCGYC 2 cut(s) 54, 266
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 2 cut(s) 717, 1303
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 2 cut(s) 419, 931
Bst4CI ACNGT 3 cut(s) 176, 364, 620
Bst6I CTCTTC 2 cut(s) 893, 1107
BstACI GRCGYC 2 cut(s) 54, 266
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 637
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 950
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 2 cut(s) 717, 1303
BstF5I GGATG 4 cut(s) 205, 427, 640, 846
BstFNI CGCG 1 cut(s) 903
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 4 cut(s) 241, 466, 544, 611
BstKTI GATC 3 cut(s) 724, 1041, 1254
BstMAI GTCTC 2 cut(s) 257, 965
BstMBI GATC 3 cut(s) 721, 1038, 1251
BstMWI GCNNNNNNNGC 5 cut(s) 62, 291, 344, 555, 608
BstNI CCWGG 2 cut(s) 419, 931
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 417, 929, 1155
BstSFI CTRYAG 3 cut(s) 336, 363, 1260
BstSNI TACGTA 1 cut(s) 220
BstUI CGCG 1 cut(s) 903
BstV2I GAAGAC 1 cut(s) 1138
BsuI GTATCC 2 cut(s) 524, 584
BsuRI GGCC 1 cut(s) 929
BtgI CCRYGG 2 cut(s) 717, 1303
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 4 cut(s) 205, 427, 640, 846
BtsI GCAGTG 2 cut(s) 782, 1226
BtsIMutI CAGTG 6 cut(s) 321, 440, 782, 950, 1226, 1356
Cac8I GCNNGC 1 cut(s) 950
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 691
CfoI GCGC 4 cut(s) 241, 466, 544, 611
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 1 cut(s) 1294
CseI GACGC 2 cut(s) 62, 274
Csp6I GTAC 3 cut(s) 172, 481, 638
CviAII CATG 9 cut(s) 605, 635, 692, 698, 718, 925, 1003, 1276, 1304
CviQI GTAC 3 cut(s) 172, 481, 638
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 723, 1040, 1253
DpnII GATC 3 cut(s) 721, 1038, 1251
DraIII CACNNNGTG 1 cut(s) 1159
Eam1104I CTCTTC 2 cut(s) 893, 1107
EarI CTCTTC 2 cut(s) 893, 1107
Ecl136II GAGCTC 1 cut(s) 952
Eco105I TACGTA 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 717, 1303
Eco24I GRGCYC 2 cut(s) 954, 1119
Eco31I GGTCTC 1 cut(s) 965
Eco47I GGWCC 1 cut(s) 1294
Eco53kI GAGCTC 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 952
EcoO109I RGGNCCY 1 cut(s) 1294
EcoRII CCWGG 2 cut(s) 417, 929
EcoT14I CCWWGG 2 cut(s) 717, 1303
EcoT38I GRGCYC 2 cut(s) 954, 1119
ErhI CCWWGG 2 cut(s) 717, 1303
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 9 cut(s) 608, 638, 695, 701, 721, 928, 1006, 1279, 1307
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 1 cut(s) 1307
FatI CATG 9 cut(s) 604, 634, 691, 697, 717, 924, 1002, 1275, 1303
FblI GTMKAC 1 cut(s) 449
FokI GGATG 4 cut(s) 212, 434, 627, 833
FriOI GRGCYC 2 cut(s) 954, 1119
FspBI CTAG 4 cut(s) 117, 524, 995, 1379
FspI TGCGCA 2 cut(s) 240, 543
GlaI GCGC 4 cut(s) 240, 465, 543, 610
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 467
HaeIII GGCC 1 cut(s) 929
HapII CCGG 3 cut(s) 588, 1157, 1335
HgaI GACGC 2 cut(s) 62, 274
HhaI GCGC 4 cut(s) 241, 466, 544, 611
Hin1I GRCGYC 2 cut(s) 54, 266
Hin1II CATG 9 cut(s) 608, 638, 695, 701, 721, 928, 1006, 1279, 1307
Hin6I GCGC 4 cut(s) 239, 464, 542, 609
HinP1I GCGC 4 cut(s) 239, 464, 542, 609
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 8 cut(s) 12, 446, 668, 842, 905, 998, 1326, 1387
HpaII CCGG 3 cut(s) 588, 1157, 1335
HphI GGTGA 3 cut(s) 404, 663, 1389
Hpy166II GTNNAC 2 cut(s) 450, 623
Hpy188I TCNGA 4 cut(s) 358, 530, 630, 1288
Hpy188III TCNNGA 4 cut(s) 50, 692, 911, 995
Hpy8I GTNNAC 2 cut(s) 450, 623
HpyAV CCTTC 8 cut(s) 128, 179, 283, 335, 428, 657, 887, 1195
HpyCH4III ACNGT 3 cut(s) 176, 364, 620
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 338, 347, 491, 602, 701, 782, 1370
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 291, 344, 555, 608
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 2 cut(s) 54, 266
Hsp92II CATG 9 cut(s) 608, 638, 695, 701, 721, 928, 1006, 1279, 1307
HspAI GCGC 4 cut(s) 239, 464, 542, 609
KflI GGGWCCC 1 cut(s) 1294
Kzo9I GATC 3 cut(s) 721, 1038, 1251
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 7 cut(s) 62, 109, 160, 217, 316, 659, 873
MaeI CTAG 4 cut(s) 117, 524, 995, 1379
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 7 cut(s) 50, 220, 227, 326, 392, 669, 1271
MalI GATC 3 cut(s) 723, 1040, 1253
MboI GATC 3 cut(s) 721, 1038, 1251
MboII GAAGA 9 cut(s) 16, 880, 1124, 1138, 1174, 1207, 1335, 1354, 1405
MhlI GDGCHC 2 cut(s) 954, 1119
MluCI AATT 2 cut(s) 535, 1010
MlyI GAGTC 3 cut(s) 455, 677, 899
MmeI TCCRAC 2 cut(s) 508, 907
MroXI GAANNNNTTC 2 cut(s) 74, 1014
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 3 cut(s) 588, 1157, 1335
MspR9I CCNGG 3 cut(s) 419, 931, 1157
Mva1269I GAATGC 2 cut(s) 784, 811
MvaI CCWGG 2 cut(s) 419, 931
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 5 cut(s) 62, 291, 344, 555, 608
NciI CCSGG 1 cut(s) 1157
NcoI CCATGG 2 cut(s) 717, 1303
NdeII GATC 3 cut(s) 721, 1038, 1251
NlaIII CATG 9 cut(s) 608, 638, 695, 701, 721, 928, 1006, 1279, 1307
NlaIV GGNNCC 7 cut(s) 127, 312, 427, 576, 1161, 1295, 1296
NmuCI GTSAC 4 cut(s) 50, 392, 669, 1271
NsbI TGCGCA 2 cut(s) 240, 543
NspI RCATGY 1 cut(s) 638
PagI TCATGA 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 907, 945
PctI GAATGC 2 cut(s) 784, 811
PdmI GAANNNNTTC 2 cut(s) 74, 1014
PfeI GAWTC 5 cut(s) 12, 842, 998, 1326, 1387
PleI GAGTC 3 cut(s) 454, 676, 899
PpsI GAGTC 3 cut(s) 454, 676, 899
Ppu21I YACGTR 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 1294
Psp124BI GAGCTC 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 1294
Psp6I CCWGG 2 cut(s) 417, 929
PspGI CCWGG 2 cut(s) 417, 929
PspN4I GGNNCC 7 cut(s) 127, 312, 427, 576, 1161, 1295, 1296
PspPI GGNCC 1 cut(s) 1294
PspPPI RGGWCCY 1 cut(s) 1294
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 173, 482, 639
RsaNI GTAC 3 cut(s) 172, 481, 638
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 1 cut(s) 954
SalI GTCGAC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 1107
Sau3AI GATC 3 cut(s) 721, 1038, 1251
Sau96I GGNCC 1 cut(s) 1294
SchI GAGTC 3 cut(s) 455, 677, 899
ScrFI CCNGG 3 cut(s) 419, 931, 1157
SduI GDGCHC 2 cut(s) 954, 1119
SfcI CTRYAG 3 cut(s) 336, 363, 1260
SinI GGWCC 1 cut(s) 1294
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SnaBI TACGTA 1 cut(s) 220
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 2 cut(s) 535, 1010
SspI AATATT 1 cut(s) 1051
SspMI CTAG 4 cut(s) 117, 524, 995, 1379
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 3 cut(s) 417, 929, 1155
StyI CCWWGG 2 cut(s) 717, 1303
TaaI ACNGT 3 cut(s) 176, 364, 620
TaiI ACGT 1 cut(s) 222
TaqI TCGA 7 cut(s) 10, 150, 207, 449, 759, 939, 1254
TasI AATT 2 cut(s) 535, 1010
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 5 cut(s) 12, 842, 998, 1326, 1387
TscAI CASTG 6 cut(s) 328, 447, 789, 950, 1233, 1356
TseFI GTSAC 4 cut(s) 50, 392, 669, 1271
Tsp45I GTSAC 4 cut(s) 50, 392, 669, 1271
TspDTI ATGAA 2 cut(s) 4, 696
TspRI CASTG 6 cut(s) 328, 447, 789, 950, 1233, 1356
VpaK11BI GGWCC 1 cut(s) 1294
XapI RAATTY 1 cut(s) 1010
XbaI TCTAGA 1 cut(s) 994
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 449
XmnI GAANNNNTTC 2 cut(s) 74, 1014
XspI CTAG 4 cut(s) 117, 524, 995, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.