RchiOBHm_Chr6g0263821

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006913
Physical Location & Seq
Reverse (-)
18757665 .. 18759849
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23661

Sequence Viewer

Length: 1896 bp
ATGAAAGAGGTCGGAGCACCTTACATAACTCAGTATGGTACAAAAGAAGGCAAAGTGGAACAGGTCGAAGCTCCTTACATAACTCAGTATGGTACAGAAGAAGGCAAAGTGGAAGTGGTCGAAGCTCCTTACATAACCGGGTACATTTCTGCGGAAGGCAACACCAAGGAAGTAGAGACGCCATACATAACAGGATATATTTCCGCACAAGACAAGAAGGGCACAAAGGAAGTGGAGGCGCCTTACATCACTGGATACATTTCCAAACGAGACACCAAGAGCACAAAAGATGTAGAGGCACCTTACATAACACAATATCAAAACAAAGAGGCTTCCTACAATACCCAGTATGGAACGAAAGAAGGAAAGAATAAGGTAGAGGAGCCTTACCTAACTGGTTACAAGACCACAAGGGAGTCGAAAGAGGTAGAAGCGCCTTACGTAACAGGGTACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTACATAACCGGATACATTTCCGCACAAGGCAGCAAGCTCAAGAAAGAGGTAGAGGCACCTTACATAACCGGATACATTTCTACACAAGGCACAAATGGCAAGGAGGTAGAGGCGCCTTACATAACTGGATACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTACATCACCGGATACATTTCCGCACAAGGAACAAAGGGCAAGAAAGAGGTAGAGGCGCCTTATATAACCGGATACATTTCCGCACAAGGCAGCAAGCTCAAGAAAGAGGTAGAGGCACCTTACATAACCGGATACATTTCTGCACAAGGCACAAATGGCAAGGAGGTAGAGGCGCCTTACATAACTGGATACATTTCCGCACAAGGCACAAAGCTCAAGAATGAGGTAGAGGCGCCTTACATCACCGGATACATTTCCGCACAAGGAACAAAGGGCAAGAAAGAGGTAGAGGCGCCTTATATAACTGGATATATTTCCGCACAAGGCACAAAGGGCAAGAAGGAAGTAGAGGCGCCTTATATAACCGGATATATTTCTGCACAAGGCGCGAAAAACTGCGAACATCAGAAGCATGCACATCCACCTTCCCAAAATGGAGCAAAGGATGTGGTTTCGGGTAAGGAGTTACCTATGGAACATCAACATCATGATCATATGCATGCACATTCATCATCCTCCCTGGATCATACTGAGGCACTCAAGCAAGGATTTTTTACTTTTGAGGATTTCTACAAAGGGAATGCACTGCCACTCAACTTCCCCAAACAAGACCATTCTCGTTTCTTGCCTAAAGCAACAGCCGATTCTATTCCATTTTCAACATCACAGCTCCCACACCTTCTCCAACTCTTCTCAACCCCACGCGACTCTCGTGATGCAAAACACATGGCCTGGACACTCGACCAGTGCGAACTGAAACCCATTAAGGGGGAGACGAAGTTCTGTGCTACTTCTCTAGAATCCATGATAGATTTTGTTCAAAAAATCATTGGTTCAGGGGTCAACTTCAATATTCTCTCTACCACCCACCCAGAAACCTCAACTGCCATCACACAAAAGTACACTATCTTGGATGAGCCCAAACAAGTCTTAGCTTCCAAAATGGTCTTTTGCCACCCGGTCCCTTATCCTTATGCTGTTTTCTTCTGCCACCACTTTGAGAACGATACCAAGTTCTTCAAGGTTTCACTGGGAGGCGAGAACGGAGATAAGGTGGAAGCCGTAGCTGTTTGCCACATGGACACTTCTGATTGGGACCCTAACCACAGTTTGTTTAGCTTATTGGGAATCAAGGCTGGTGCTTCTTCACCAGTGTGCCATTTCTTCCCTGGAAATCATCTAGTTTGGATTCCATCATCACCAACAACAGCTACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

631

Amino Acids

69.54

Weight (kDa)

6.42

Isoelectric Point (pI)

17.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 409 - 622 2e-74 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1064, 1380
AclWI GGATC 1 cut(s) 1206
AfaI GTAC 5 cut(s) 40, 94, 143, 452, 1577
AfiI CCNNNNNNNGG 2 cut(s) 1442, 1443
AgsI TTSAA 4 cut(s) 1335, 1496, 1525, 1696
AjnI CCWGG 3 cut(s) 1194, 1406, 1843
AleI CACNNNNGTG 1 cut(s) 1828
AloI GAACNNNNNNTCC 2 cut(s) 1439, 1471
Alw21I GWGCWC 2 cut(s) 19, 284
Alw26I GTCTC 3 cut(s) 170, 264, 1442
AlwI GGATC 1 cut(s) 1206
AoxI GGCC 1 cut(s) 1404
ApeKI GCWGC 2 cut(s) 528, 765
AspS9I GGNCC 2 cut(s) 1636, 1771
AsuC2I CCSGG 2 cut(s) 139, 1634
AsuHPI GGTGA 4 cut(s) 673, 910, 1815, 1866
AvaII GGWCC 2 cut(s) 1636, 1771
BaeGI GKGCMC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 1596
BauI CACGAG 1 cut(s) 1386
Bbv12I GWGCWC 2 cut(s) 19, 284
BbvI GCAGC 2 cut(s) 540, 777
BccI CCATC 2 cut(s) 1571, 1876
BceAI ACGGC 1 cut(s) 1721
BciT130I CCWGG 3 cut(s) 1196, 1408, 1845
BciVI GTATCC 9 cut(s) 248, 503, 563, 620, 680, 740, 800, 857, 917
BclI TGATCA 1 cut(s) 1165
BcnI CCSGG 2 cut(s) 139, 1634
BcoDI GTCTC 3 cut(s) 170, 264, 1442
BfaI CTAG 2 cut(s) 1472, 1856
BfuI GTATCC 9 cut(s) 248, 503, 563, 620, 680, 740, 800, 857, 917
BisI GCNGC 2 cut(s) 529, 766
BlsI GCNGC 2 cut(s) 530, 767
Bme1390I CCNGG 5 cut(s) 139, 1196, 1408, 1634, 1845
Bme18I GGWCC 2 cut(s) 1636, 1771
BmgT120I GGNCC 2 cut(s) 1636, 1771
BmrFI CCNGG 5 cut(s) 139, 1196, 1408, 1634, 1845
BmrI ACTGGG 2 cut(s) 340, 1715
BmsI GCATC 1 cut(s) 1381
BmuI ACTGGG 2 cut(s) 340, 1715
BpuEI CTTGAG 6 cut(s) 461, 521, 638, 758, 875, 1199
BpuMI CCSGG 2 cut(s) 139, 1634
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 165, 1194, 1843
BsaWI WCCGGW 7 cut(s) 506, 566, 683, 743, 803, 920, 1040
BsaXI ACNNNNNCTCC 6 cut(s) 1341, 1371, 1439, 1469, 1713, 1743
Bsc4I CCNNNNNNNGG 2 cut(s) 1442, 1443
Bse1I ACTGG 9 cut(s) 256, 346, 400, 628, 865, 985, 1420, 1710, 1826
BseBI CCWGG 3 cut(s) 1196, 1408, 1845
BseDI CCNNGG 3 cut(s) 165, 1194, 1843
BseGI GGATG 4 cut(s) 1093, 1126, 1187, 1594
BseLI CCNNNNNNNGG 2 cut(s) 1442, 1443
BseMII CTCAG 3 cut(s) 44, 98, 1197
BseNI ACTGG 9 cut(s) 256, 346, 400, 628, 865, 985, 1420, 1710, 1826
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 2 cut(s) 540, 777
BsgI GTGCAG 2 cut(s) 801, 1038
Bsh1236I CGCG 2 cut(s) 1064, 1380
BshFI GGCC 1 cut(s) 1406
BsiHKAI GWGCWC 2 cut(s) 19, 284
BsiSI CCGG 9 cut(s) 138, 507, 567, 684, 744, 804, 921, 1041, 1634
BslFI GGGAC 2 cut(s) 1622, 1784
BslI CCNNNNNNNGG 2 cut(s) 1442, 1443
BsmAI GTCTC 3 cut(s) 170, 264, 1442
BsmBI CGTCTC 2 cut(s) 170, 1442
BsmFI GGGAC 2 cut(s) 1622, 1784
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 1 cut(s) 1406
Bsp1286I GDGCHC 4 cut(s) 19, 224, 284, 1596
Bsp143I GATC 2 cut(s) 1165, 1198
BspANI GGCC 1 cut(s) 1406
BspCNI CTCAG 3 cut(s) 43, 97, 1198
BspFNI CGCG 2 cut(s) 1064, 1380
BspHI TCATGA 1 cut(s) 1162
BspPI GGATC 1 cut(s) 1206
BsrI ACTGG 9 cut(s) 256, 346, 400, 628, 865, 985, 1420, 1710, 1826
BssECI CCNNGG 3 cut(s) 165, 1194, 1843
BssMI GATC 2 cut(s) 1165, 1198
BssSI CACGAG 1 cut(s) 1386
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 1386
Bst2UI CCWGG 3 cut(s) 1196, 1408, 1845
Bst4CI ACNGT 1 cut(s) 1784
Bst6I CTCTTC 1 cut(s) 1370
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 4 cut(s) 533, 770, 1089, 1176
BstDEI CTNAG 4 cut(s) 30, 84, 1206, 1606
BstF5I GGATG 4 cut(s) 1093, 1126, 1187, 1594
BstFNI CGCG 2 cut(s) 1064, 1380
BstKTI GATC 2 cut(s) 1168, 1201
BstMAI GTCTC 3 cut(s) 170, 264, 1442
BstMBI GATC 2 cut(s) 1165, 1198
BstMWI GCNNNNNNNGC 4 cut(s) 594, 831, 1008, 1061
BstNI CCWGG 3 cut(s) 1196, 1408, 1845
BstNSI RCATGY 2 cut(s) 1091, 1178
BstSCI CCNGG 5 cut(s) 137, 1194, 1406, 1632, 1843
BstSLI GKGCMC 1 cut(s) 224
BstSNI TACGTA 1 cut(s) 442
BstUI CGCG 2 cut(s) 1064, 1380
BstV1I GCAGC 2 cut(s) 540, 777
BsuI GTATCC 9 cut(s) 248, 503, 563, 620, 680, 740, 800, 857, 917
BsuRI GGCC 1 cut(s) 1406
BtsCI GGATG 4 cut(s) 1093, 1126, 1187, 1594
BtsI GCAGTG 1 cut(s) 1259
BtsIMutI CAGTG 5 cut(s) 249, 1259, 1427, 1703, 1833
Cac8I GCNNGC 4 cut(s) 533, 770, 1089, 1176
CciI TCATGA 1 cut(s) 1162
Cfr13I GGNCC 2 cut(s) 1636, 1771
CseI GACGC 1 cut(s) 187
Csp6I GTAC 5 cut(s) 39, 93, 142, 451, 1576
CspCI CAANNNNNGTGG 4 cut(s) 213, 248, 1104, 1139
CviAII CATG 6 cut(s) 1088, 1163, 1175, 1402, 1480, 1753
CviQI GTAC 5 cut(s) 39, 93, 142, 451, 1576
DdeI CTNAG 4 cut(s) 30, 84, 1206, 1606
DinI GGCGCC 9 cut(s) 240, 495, 612, 672, 732, 849, 909, 969, 1029
DpnI GATC 2 cut(s) 1167, 1200
DpnII GATC 2 cut(s) 1165, 1198
Eam1104I CTCTTC 1 cut(s) 1370
EarI CTCTTC 1 cut(s) 1370
Eco105I TACGTA 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 1596
Eco47I GGWCC 2 cut(s) 1636, 1771
EcoO109I RGGNCCY 1 cut(s) 1771
EcoRII CCWGG 3 cut(s) 1194, 1406, 1843
EcoT14I CCWWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 1176
EcoT38I GRGCYC 1 cut(s) 1596
EgeI GGCGCC 9 cut(s) 240, 495, 612, 672, 732, 849, 909, 969, 1029
EheI GGCGCC 9 cut(s) 240, 495, 612, 672, 732, 849, 909, 969, 1029
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 2 cut(s) 170, 1442
FaeI CATG 6 cut(s) 1091, 1166, 1178, 1405, 1483, 1756
FaqI GGGAC 2 cut(s) 1622, 1784
FatI CATG 6 cut(s) 1087, 1162, 1174, 1401, 1479, 1752
FauNDI CATATG 1 cut(s) 1170
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 2 cut(s) 529, 766
FokI GGATG 4 cut(s) 1080, 1133, 1174, 1601
FriOI GRGCYC 1 cut(s) 1596
Fsp4HI GCNGC 2 cut(s) 529, 766
FspBI CTAG 2 cut(s) 1472, 1856
GluI GCNGC 2 cut(s) 529, 766
HaeIII GGCC 1 cut(s) 1406
HapII CCGG 9 cut(s) 138, 507, 567, 684, 744, 804, 921, 1041, 1634
HgaI GACGC 1 cut(s) 187
Hin1II CATG 6 cut(s) 1091, 1166, 1178, 1405, 1483, 1756
HincII GTYRAC 1 cut(s) 1519
HindII GTYRAC 1 cut(s) 1519
HinfI GANTC 6 cut(s) 416, 1319, 1382, 1475, 1803, 1864
HpaII CCGG 9 cut(s) 138, 507, 567, 684, 744, 804, 921, 1041, 1634
HphI GGTGA 4 cut(s) 673, 910, 1815, 1866
Hpy166II GTNNAC 2 cut(s) 1519, 1578
Hpy188I TCNGA 3 cut(s) 14, 1083, 1765
Hpy188III TCNNGA 8 cut(s) 478, 538, 655, 775, 892, 1163, 1388, 1472
Hpy8I GTNNAC 2 cut(s) 1519, 1578
HpyCH4III ACNGT 1 cut(s) 1784
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 7 cut(s) 818, 1055, 1091, 1174, 1178, 1259, 1394
HpyF10VI GCNNNNNNNGC 4 cut(s) 594, 831, 1008, 1061
HpyF3I CTNAG 4 cut(s) 30, 84, 1206, 1606
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 6 cut(s) 1091, 1166, 1178, 1405, 1483, 1756
KasI GGCGCC 9 cut(s) 238, 493, 610, 670, 730, 847, 907, 967, 1027
KflI GGGWCCC 1 cut(s) 1771
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 2 cut(s) 1165, 1198
LmnI GCTCC 6 cut(s) 14, 76, 130, 382, 1112, 1350
Lsp1109I GCAGC 2 cut(s) 540, 777
LweI GCATC 1 cut(s) 1381
MaeI CTAG 2 cut(s) 1472, 1856
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 398, 442, 1140
MalI GATC 2 cut(s) 1167, 1200
MboI GATC 2 cut(s) 1165, 1198
MboII GAAGA 6 cut(s) 110, 1357, 1651, 1684, 1812, 1831
MhlI GDGCHC 4 cut(s) 19, 224, 284, 1596
Mly113I GGCGCC 9 cut(s) 239, 494, 611, 671, 731, 848, 908, 968, 1028
MlyI GAGTC 2 cut(s) 425, 1376
MmeI TCCRAC 1 cut(s) 1384
Mph1103I ATGCAT 1 cut(s) 1176
MseI TTAA 2 cut(s) 1440, 1894
MslI CAYNNNNRTG 2 cut(s) 1173, 1828
MspI CCGG 9 cut(s) 138, 507, 567, 684, 744, 804, 921, 1041, 1634
MspR9I CCNGG 5 cut(s) 139, 1196, 1408, 1634, 1845
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 3 cut(s) 1196, 1408, 1845
MvnI CGCG 2 cut(s) 1064, 1380
MwoI GCNNNNNNNGC 4 cut(s) 594, 831, 1008, 1061
NarI GGCGCC 9 cut(s) 239, 494, 611, 671, 731, 848, 908, 968, 1028
NciI CCSGG 2 cut(s) 139, 1634
NdeI CATATG 1 cut(s) 1170
NdeII GATC 2 cut(s) 1165, 1198
NlaIII CATG 6 cut(s) 1091, 1166, 1178, 1405, 1483, 1756
NsiI ATGCAT 1 cut(s) 1176
NspI RCATGY 2 cut(s) 1091, 1178
OliI CACNNNNGTG 1 cut(s) 1828
PaeI GCATGC 2 cut(s) 1091, 1178
PagI TCATGA 1 cut(s) 1162
PcsI WCGNNNNNNNCGW 2 cut(s) 1384, 1422
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 4 cut(s) 1319, 1475, 1803, 1864
PkrI GCNGC 2 cut(s) 530, 767
PleI GAGTC 2 cut(s) 424, 1376
PluTI GGCGCC 9 cut(s) 242, 497, 614, 674, 734, 851, 911, 971, 1031
PpsI GAGTC 2 cut(s) 424, 1376
Ppu21I YACGTR 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 1771
Psp5II RGGWCCY 1 cut(s) 1771
Psp6I CCWGG 3 cut(s) 1194, 1406, 1843
PspGI CCWGG 3 cut(s) 1194, 1406, 1843
PspPI GGNCC 2 cut(s) 1636, 1771
PspPPI RGGWCCY 1 cut(s) 1771
RsaI GTAC 5 cut(s) 40, 94, 143, 452, 1577
RsaNI GTAC 5 cut(s) 39, 93, 142, 451, 1576
RseI CAYNNNNRTG 2 cut(s) 1173, 1828
SaqAI TTAA 2 cut(s) 1440, 1894
SatI GCNGC 2 cut(s) 529, 766
Sau3AI GATC 2 cut(s) 1165, 1198
Sau96I GGNCC 2 cut(s) 1636, 1771
SchI GAGTC 2 cut(s) 425, 1376
ScrFI CCNGG 5 cut(s) 139, 1196, 1408, 1634, 1845
SduI GDGCHC 4 cut(s) 19, 224, 284, 1596
SfaNI GCATC 1 cut(s) 1381
SfoI GGCGCC 9 cut(s) 240, 495, 612, 672, 732, 849, 909, 969, 1029
SinI GGWCC 2 cut(s) 1636, 1771
SmiMI CAYNNNNRTG 2 cut(s) 1173, 1828
SmlI CTYRAG 6 cut(s) 476, 536, 653, 773, 890, 1214
SmoI CTYRAG 6 cut(s) 476, 536, 653, 773, 890, 1214
SnaBI TACGTA 1 cut(s) 442
SphI GCATGC 2 cut(s) 1091, 1178
SspDI GGCGCC 9 cut(s) 238, 493, 610, 670, 730, 847, 907, 967, 1027
SspI AATATT 1 cut(s) 1528
SspMI CTAG 2 cut(s) 1472, 1856
StyD4I CCNGG 5 cut(s) 137, 1194, 1406, 1632, 1843
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 1784
TaiI ACGT 1 cut(s) 444
TaqI TCGA 4 cut(s) 66, 120, 419, 1416
TatI WGTACW 1 cut(s) 1575
TfiI GAWTC 4 cut(s) 1319, 1475, 1803, 1864
Tru1I TTAA 2 cut(s) 1440, 1894
Tru9I TTAA 2 cut(s) 1440, 1894
TscAI CASTG 5 cut(s) 256, 1266, 1427, 1710, 1833
TseI GCWGC 2 cut(s) 528, 765
TspDTI ATGAA 2 cut(s) 17, 1173
TspGWI ACGGA 1 cut(s) 1734
TspRI CASTG 5 cut(s) 256, 1266, 1427, 1710, 1833
VpaK11BI GGWCC 2 cut(s) 1636, 1771
XbaI TCTAGA 1 cut(s) 1471
XceI RCATGY 2 cut(s) 1091, 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 1841
XspI CTAG 2 cut(s) 1472, 1856
Zsp2I ATGCAT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.