Rroxscaffold_7G00203850

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006913
Physical Location & Seq
Forward (+)
52874062 .. 52875993
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203850.1

Sequence Viewer

Length: 1845 bp
ATGCTAAGCTCTTATCAAGGATACATTGTTTGTCCTTATGCCAGTGGAGCATGGGACGTAAGCACAAAACAAGTGGAGATCAATAGCGAGCCCTACGTCACAAATTATGGAGCTAGGAAAATTGTCAAAGAGTTGGAGGTGAGTGAGCCTTATATGACCAATTATGGTGGCAGAAAAATTGTGAAAGAGGTGGAGATAAGTGTGCCTTACATGACCAACTACGGTGCTAGAGAAAGTGTGAAAGAAGTGGAAAAGACCGAGCCTTACATGACCAATTATGGAGCTAGAAAAATTGTGAAAGAAGTGGAGGTAAGCGAGCCATACATGACCAACTACGGAGCTAGAGAAAGTGTGGAAGCAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGCTAGAAAAAGTGTGAAAGAAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGCTACAGATAGTGTGAGAGAAGCTGAGAAACCTTACATGACGAACTATGCAGCTAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGGAGCTACAGTAAGTGTGAAAGAAGCTGAGGAGCCCTATATGACCAATTATGGAAATAAAGAGGCTTCTTACATTACCCAATACGGAAACAAAGAAGACATAAAAGAAGAGCCTTACATGACCAACTATGGAGCTAGAAAAAGTGTGAAAGAAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGCTACAGATAGTGTGAGAGAAGCTGAGAAACCTTACATGACGAACTATGCAGCTAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGTAGCTACAGTAAGTGTGAAAGAAGCTGAGGAGCCCTATGCGACCAATTATGGAAATAAAGAGGCTTCTTACATTACCCAATACGGAAACAAAGAAGACATAAAAGAAACAGAGGCTTCTTACATAACCCAGTACGGAGACAAAGAAGCTGAGGCTACTTACATAAATCAGTACGGAAACAAAGAAACTGAGGCTTCTTACATAACCCAATATGGCACACAAGGAGGAGAAAACAAAGTACAGAAGCCAGTTCCATCCGCCCATGAGCACCATGATCATATGCATGCACATTCATCATCTCGAAATGAGGCACACGAGCAAGGCTTTTTCACTTTGGTTGATTTCCATAAGGGGAGTACAATGCCACTCAACTTCCCAAACCAAGACCATTCTCCTTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACGCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGTGCTACTTCGCTAGAGTCAATGAATGATTTCGTTCACAAAATCATTGGATCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGGAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCATTTTGAGAGCGACACCAGGTTCTTTCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGAATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGCGCCTCCTCTCCTGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

614

Amino Acids

69.64

Weight (kDa)

6.0

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 393 - 606 4.9e-72 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1332
AciI CCGC 3 cut(s) 1110, 1694, 1744
AclWI GGATC 3 cut(s) 1318, 1468, 1475
AcsI RAATTY 2 cut(s) 1472, 1723
AcyI GRCGYC 1 cut(s) 1344
AfaI GTAC 6 cut(s) 986, 1025, 1092, 1210, 1361, 1529
AfiI CCNNNNNNNGG 2 cut(s) 1394, 1750
AgsI TTSAA 1 cut(s) 1477
AjnI CCWGG 1 cut(s) 1637
Alw21I GWGCWC 1 cut(s) 1122
Alw26I GTCTC 3 cut(s) 984, 1394, 1657
AlwI GGATC 3 cut(s) 1318, 1468, 1475
AlwNI CAGNNNCTG 1 cut(s) 1838
ApeKI GCWGC 2 cut(s) 503, 797
ApoI RAATTY 2 cut(s) 1472, 1723
Asp700I GAANNNNTTC 1 cut(s) 1439
AspLEI GCGC 1 cut(s) 1769
AspS9I GGNCC 1 cut(s) 1588
AsuC2I CCSGG 1 cut(s) 1796
AsuHPI GGTGA 3 cut(s) 151, 1409, 1676
AsuNHI GCTAGC 1 cut(s) 1763
AvaII GGWCC 1 cut(s) 1588
BaeI ACNNNNGTAYC 2 cut(s) 1738, 1771
BanII GRGCYC 3 cut(s) 93, 594, 888
BauI CACGAG 2 cut(s) 1166, 1338
BbsI GAAGAC 2 cut(s) 660, 954
Bbv12I GWGCWC 1 cut(s) 1122
BbvCI CCTCAGC 3 cut(s) 585, 879, 1002
BbvI GCAGC 2 cut(s) 515, 809
BccI CCATC 3 cut(s) 1114, 1397, 1590
BceAI ACGGC 1 cut(s) 1673
BciT130I CCWGG 1 cut(s) 1639
BciVI GTATCC 1 cut(s) 14
BclI TGATCA 2 cut(s) 1126, 1369
BcnI CCSGG 1 cut(s) 1796
BcoDI GTCTC 3 cut(s) 984, 1394, 1657
BfmI CTRYAG 4 cut(s) 456, 564, 750, 858
BfoI RGCGCY 1 cut(s) 1770
BfuI GTATCC 1 cut(s) 14
BisI GCNGC 2 cut(s) 504, 798
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 505, 799
Bme1390I CCNGG 2 cut(s) 1639, 1796
Bme18I GGWCC 1 cut(s) 1588
BmgT120I GGNCC 1 cut(s) 1588
BmiI GGNNCC 3 cut(s) 591, 885, 1590
BmrFI CCNGG 2 cut(s) 1639, 1796
BmrI ACTGGG 1 cut(s) 976
BmtI GCTAGC 1 cut(s) 1767
BmuI ACTGGG 1 cut(s) 976
BpiI GAAGAC 2 cut(s) 660, 954
Bpu10I CCTNAGC 3 cut(s) 585, 879, 1002
Bpu1102I GCTNAGC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 1796
BsaHI GRCGYC 1 cut(s) 1344
BsaI GGTCTC 2 cut(s) 1394, 1657
BsaWI WCCGGW 1 cut(s) 1585
BsaXI ACNNNNNCTCC 6 cut(s) 552, 582, 1293, 1323, 1665, 1695
Bsc4I CCNNNNNNNGG 2 cut(s) 1394, 1750
Bse1I ACTGG 3 cut(s) 42, 982, 1100
BseBI CCWGG 1 cut(s) 1639
BseGI GGATG 2 cut(s) 1106, 1582
BseLI CCNNNNNNNGG 2 cut(s) 1394, 1750
BseMII CTCAG 7 cut(s) 468, 576, 762, 870, 993, 1032, 1747
BseNI ACTGG 3 cut(s) 42, 982, 1100
BseRI GAGGAG 4 cut(s) 602, 896, 1092, 1762
BseXI GCAGC 2 cut(s) 515, 809
BseYI CCCAGC 1 cut(s) 1825
Bsh1236I CGCG 1 cut(s) 1332
BsiHKAI GWGCWC 1 cut(s) 1122
BsiSI CCGG 2 cut(s) 1586, 1796
BslFI GGGAC 2 cut(s) 68, 1574
BslI CCNNNNNNNGG 2 cut(s) 1394, 1750
BsmAI GTCTC 3 cut(s) 984, 1394, 1657
BsmFI GGGAC 2 cut(s) 68, 1574
Bso31I GGTCTC 2 cut(s) 1394, 1657
Bsp1286I GDGCHC 4 cut(s) 93, 594, 888, 1122
Bsp143I GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 3 cut(s) 1110, 1694, 1744
BspCNI CTCAG 7 cut(s) 469, 577, 763, 871, 994, 1033, 1746
BspFNI CGCG 1 cut(s) 1332
BspLI GGNNCC 3 cut(s) 591, 885, 1590
BspOI GCTAGC 1 cut(s) 1767
BspPI GGATC 3 cut(s) 1318, 1468, 1475
BspQI GCTCTTC 1 cut(s) 660
BspTNI GGTCTC 2 cut(s) 1394, 1657
BsrI ACTGG 3 cut(s) 42, 982, 1100
BssMI GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
BssNI GRCGYC 1 cut(s) 1344
BssSI CACGAG 2 cut(s) 1166, 1338
Bst2BI CACGAG 2 cut(s) 1166, 1338
Bst2UI CCWGG 1 cut(s) 1639
Bst4CI ACNGT 3 cut(s) 224, 568, 862
Bst6I CTCTTC 2 cut(s) 660, 1322
BstACI GRCGYC 1 cut(s) 1344
BstC8I GCNNGC 5 cut(s) 89, 317, 1137, 1379, 1765
BstF5I GGATG 2 cut(s) 1106, 1582
BstFNI CGCG 1 cut(s) 1332
BstH2I RGCGCY 1 cut(s) 1770
BstHHI GCGC 1 cut(s) 1769
BstKTI GATC 6 cut(s) 81, 1129, 1326, 1372, 1463, 1470
BstMAI GTCTC 3 cut(s) 984, 1394, 1657
BstMBI GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 1639
BstNSI RCATGY 1 cut(s) 1139
BstSCI CCNGG 2 cut(s) 1637, 1794
BstSFI CTRYAG 4 cut(s) 456, 564, 750, 858
BstUI CGCG 1 cut(s) 1332
BstV1I GCAGC 2 cut(s) 515, 809
BstV2I GAAGAC 2 cut(s) 660, 954
BstX2I RGATCY 1 cut(s) 1460
BstXI CCANNNNNNTGG 1 cut(s) 1354
BstYI RGATCY 1 cut(s) 1460
BsuI GTATCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 1106, 1582
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 49, 366
Cac8I GCNNGC 5 cut(s) 89, 317, 1137, 1379, 1765
CaiI CAGNNNCTG 1 cut(s) 1838
CfoI GCGC 1 cut(s) 1769
Cfr13I GGNCC 1 cut(s) 1588
CseI GACGC 1 cut(s) 1352
CsiI ACCWGGT 1 cut(s) 1637
Csp6I GTAC 6 cut(s) 985, 1024, 1091, 1209, 1360, 1528
CspCI CAANNNNNGTGG 4 cut(s) 54, 89, 148, 183
CviQI GTAC 6 cut(s) 985, 1024, 1091, 1209, 1360, 1528
DpnI GATC 6 cut(s) 80, 1128, 1325, 1371, 1462, 1469
DpnII GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
Eam1104I CTCTTC 2 cut(s) 660, 1322
EarI CTCTTC 2 cut(s) 660, 1322
EciI GGCGGA 1 cut(s) 1099
Eco24I GRGCYC 3 cut(s) 93, 594, 888
Eco31I GGTCTC 2 cut(s) 1394, 1657
Eco47I GGWCC 1 cut(s) 1588
EcoRI GAATTC 1 cut(s) 1723
EcoRII CCWGG 1 cut(s) 1637
EcoT22I ATGCAT 1 cut(s) 1137
EcoT38I GRGCYC 3 cut(s) 93, 594, 888
FaqI GGGAC 2 cut(s) 68, 1574
FauNDI CATATG 1 cut(s) 1131
FbaI TGATCA 2 cut(s) 1126, 1369
Fnu4HI GCNGC 2 cut(s) 504, 798
FokI GGATG 2 cut(s) 1093, 1569
FriOI GRGCYC 3 cut(s) 93, 594, 888
Fsp4HI GCNGC 2 cut(s) 504, 798
GlaI GCGC 1 cut(s) 1768
GluI GCNGC 2 cut(s) 504, 798
GsaI CCCAGC 1 cut(s) 1829
HaeII RGCGCY 1 cut(s) 1770
HapII CCGG 2 cut(s) 1586, 1796
HgaI GACGC 1 cut(s) 1352
HhaI GCGC 1 cut(s) 1769
Hin1I GRCGYC 1 cut(s) 1344
Hin6I GCGC 1 cut(s) 1767
HinP1I GCGC 1 cut(s) 1767
HinfI GANTC 5 cut(s) 1271, 1334, 1427, 1534, 1816
HpaII CCGG 2 cut(s) 1586, 1796
HphI GGTGA 3 cut(s) 151, 1409, 1676
Hpy166II GTNNAC 3 cut(s) 1362, 1447, 1530
Hpy188I TCNGA 1 cut(s) 1717
Hpy188III TCNNGA 3 cut(s) 1152, 1321, 1340
Hpy8I GTNNAC 3 cut(s) 1362, 1447, 1530
HpyAV CCTTC 4 cut(s) 523, 817, 1286, 1316
HpyCH4III ACNGT 3 cut(s) 224, 568, 862
HpyCH4IV ACGT 2 cut(s) 57, 96
HpyCH4V TGCA 4 cut(s) 503, 797, 1135, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 2 cut(s) 57, 96
Hsp92I GRCGYC 1 cut(s) 1344
HspAI GCGC 1 cut(s) 1767
Ksp22I TGATCA 2 cut(s) 1126, 1369
Kzo9I GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
LguI GCTCTTC 1 cut(s) 660
Lsp1109I GCAGC 2 cut(s) 515, 809
MabI ACCWGGT 1 cut(s) 1637
MaeII ACGT 2 cut(s) 57, 96
MaeIII GTNAC 2 cut(s) 97, 1340
MalI GATC 6 cut(s) 80, 1128, 1325, 1371, 1462, 1469
MboI GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
MboII GAAGA 5 cut(s) 665, 677, 959, 1309, 1783
MflI RGATCY 1 cut(s) 1460
MhlI GDGCHC 4 cut(s) 93, 594, 888, 1122
MlyI GAGTC 1 cut(s) 1436
MmeI TCCRAC 2 cut(s) 114, 1336
Mph1103I ATGCAT 1 cut(s) 1137
MroXI GAANNNNTTC 1 cut(s) 1439
MslI CAYNNNNRTG 1 cut(s) 1134
MspA1I CMGCKG 1 cut(s) 1268
MspI CCGG 2 cut(s) 1586, 1796
MspR9I CCNGG 2 cut(s) 1639, 1796
MvaI CCWGG 1 cut(s) 1639
MvnI CGCG 1 cut(s) 1332
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 1796
NdeI CATATG 1 cut(s) 1131
NdeII GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
NheI GCTAGC 1 cut(s) 1763
NlaIV GGNNCC 3 cut(s) 591, 885, 1590
NmuCI GTSAC 2 cut(s) 97, 1340
NsiI ATGCAT 1 cut(s) 1137
NspI RCATGY 1 cut(s) 1139
PaeI GCATGC 1 cut(s) 1139
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 1336
PdmI GAANNNNTTC 1 cut(s) 1439
PfeI GAWTC 4 cut(s) 1271, 1334, 1534, 1816
PfoI TCCNGGA 1 cut(s) 1794
PkrI GCNGC 2 cut(s) 505, 799
PleI GAGTC 1 cut(s) 1435
PpsI GAGTC 1 cut(s) 1435
Psp6I CCWGG 1 cut(s) 1637
PspFI CCCAGC 1 cut(s) 1825
PspGI CCWGG 1 cut(s) 1637
PspN4I GGNNCC 3 cut(s) 591, 885, 1590
PspPI GGNCC 1 cut(s) 1588
PstNI CAGNNNCTG 1 cut(s) 1838
PsuI RGATCY 1 cut(s) 1460
PvuII CAGCTG 1 cut(s) 1268
RsaI GTAC 6 cut(s) 986, 1025, 1092, 1210, 1361, 1529
RsaNI GTAC 6 cut(s) 985, 1024, 1091, 1209, 1360, 1528
RseI CAYNNNNRTG 1 cut(s) 1134
SapI GCTCTTC 1 cut(s) 660
SatI GCNGC 2 cut(s) 504, 798
Sau3AI GATC 6 cut(s) 78, 1126, 1323, 1369, 1460, 1467
Sau96I GGNCC 1 cut(s) 1588
SchI GAGTC 1 cut(s) 1436
ScrFI CCNGG 2 cut(s) 1639, 1796
SduI GDGCHC 4 cut(s) 93, 594, 888, 1122
SexAI ACCWGGT 1 cut(s) 1637
SfcI CTRYAG 4 cut(s) 456, 564, 750, 858
SinI GGWCC 1 cut(s) 1588
SmiMI CAYNNNNRTG 1 cut(s) 1134
SphI GCATGC 1 cut(s) 1139
SsiI CCGC 3 cut(s) 1110, 1694, 1744
SspI AATATT 1 cut(s) 1480
StyD4I CCNGG 2 cut(s) 1637, 1794
TaaI ACNGT 3 cut(s) 224, 568, 862
TaiI ACGT 2 cut(s) 60, 99
TaqI TCGA 2 cut(s) 1153, 1322
TaqII GACCGA 1 cut(s) 272
TatI WGTACW 3 cut(s) 1090, 1208, 1527
TfiI GAWTC 4 cut(s) 1271, 1334, 1534, 1816
TscAI CASTG 2 cut(s) 49, 366
TseFI GTSAC 2 cut(s) 97, 1340
TseI GCWGC 2 cut(s) 503, 797
Tsp45I GTSAC 2 cut(s) 97, 1340
TspDTI ATGAA 2 cut(s) 1134, 1448
TspGWI ACGGA 5 cut(s) 351, 657, 951, 1002, 1041
TspRI CASTG 2 cut(s) 49, 366
VpaK11BI GGWCC 1 cut(s) 1588
XapI RAATTY 2 cut(s) 1472, 1723
XceI RCATGY 1 cut(s) 1139
XmnI GAANNNNTTC 1 cut(s) 1439
Zsp2I ATGCAT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.