Rh6AG126200

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006913
Physical Location & Seq
Reverse (-)
18919119 .. 18919950
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG126200.1

Sequence Viewer

Length: 633 bp
ATGCCACTCAACTTCCCAAACCAAGACCATTCTCCTTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACGCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGTGCTACTTCGCTAGAGTCAATGAATAATTTCGTTCACAAAATCATTGGTTCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCACTTTGAGAGCGACACCAGGTTCTTCCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTGCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

210

Amino Acids

23.52

Weight (kDa)

6.82

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 2 - 202 1.2e-68 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 482, 532
AclWI GGATC 2 cut(s) 106, 263
AcsI RAATTY 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 149, 317
AfiI CCNNNNNNNGG 2 cut(s) 182, 538
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 2 cut(s) 425, 435
AluBI AGCT 5 cut(s) 56, 350, 520, 551, 623
AluI AGCT 5 cut(s) 56, 350, 520, 551, 623
Alw26I GTCTC 2 cut(s) 182, 445
AlwI GGATC 2 cut(s) 106, 263
AlwNI CAGNNNCTG 1 cut(s) 626
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 2 cut(s) 197, 464
AvaII GGWCC 1 cut(s) 376
BaeI ACNNNNGTAYC 2 cut(s) 526, 559
BauI CACGAG 1 cut(s) 126
BccI CCATC 2 cut(s) 185, 378
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 427, 437
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 182, 445
BfaI CTAG 3 cut(s) 212, 446, 552
Bme1390I CCNGG 3 cut(s) 427, 437, 584
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 427, 437, 584
BpuMI CCSGG 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 182, 445
BsaWI WCCGGW 2 cut(s) 373, 565
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 538
BseBI CCWGG 2 cut(s) 427, 437
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 182, 538
BseMII CTCAG 1 cut(s) 535
BseRI GAGGAG 1 cut(s) 550
BseYI CCCAGC 1 cut(s) 613
Bsh1236I CGCG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 374, 566, 584
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 182, 538
BsmAI GTCTC 2 cut(s) 182, 445
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 608
Bso31I GGTCTC 2 cut(s) 182, 445
Bsp143I GATC 3 cut(s) 111, 157, 255
BspACI CCGC 2 cut(s) 482, 532
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 2 cut(s) 106, 263
BspTNI GGTCTC 2 cut(s) 182, 445
BssMI GATC 3 cut(s) 111, 157, 255
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 427, 437
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 45, 516, 521
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 3 cut(s) 114, 160, 258
BstMAI GTCTC 2 cut(s) 182, 445
BstMBI GATC 3 cut(s) 111, 157, 255
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 2 cut(s) 427, 437
BstSCI CCNGG 3 cut(s) 425, 435, 582
BstUI CGCG 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 626
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 425
Csp6I GTAC 2 cut(s) 148, 316
CviAII CATG 2 cut(s) 142, 493
CviJI RGCY 6 cut(s) 56, 350, 476, 520, 551, 623
CviKI_1 RGCY 6 cut(s) 56, 350, 476, 520, 551, 623
CviQI GTAC 2 cut(s) 148, 316
DdeI CTNAG 3 cut(s) 45, 516, 521
DpnI GATC 3 cut(s) 113, 159, 257
DpnII GATC 3 cut(s) 111, 157, 255
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco31I GGTCTC 2 cut(s) 182, 445
Eco47I GGWCC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 425, 435
FaeI CATG 2 cut(s) 145, 496
FaiI YATR 3 cut(s) 143, 347, 494
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 141, 492
FbaI TGATCA 1 cut(s) 157
FokI GGATG 1 cut(s) 357
FspBI CTAG 3 cut(s) 212, 446, 552
GsaI CCCAGC 1 cut(s) 617
HapII CCGG 3 cut(s) 374, 566, 584
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 145, 496
HinfI GANTC 5 cut(s) 59, 122, 215, 322, 512
HpaII CCGG 3 cut(s) 374, 566, 584
HphI GGTGA 2 cut(s) 197, 464
Hpy166II GTNNAC 3 cut(s) 150, 235, 318
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 3 cut(s) 109, 128, 326
Hpy8I GTNNAC 3 cut(s) 150, 235, 318
HpyAV CCTTC 2 cut(s) 74, 104
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 3 cut(s) 45, 516, 521
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 145, 496
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 111, 157, 255
MabI ACCWGGT 1 cut(s) 425
MaeI CTAG 3 cut(s) 212, 446, 552
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 113, 159, 257
MboI GATC 3 cut(s) 111, 157, 255
MboII GAAGA 4 cut(s) 97, 341, 424, 571
MluCI AATT 2 cut(s) 226, 260
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 6 cut(s) 298, 304, 310, 443, 568, 571
MroXI GAANNNNTTC 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 374, 566, 584
MspR9I CCNGG 3 cut(s) 427, 437, 584
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 2 cut(s) 427, 437
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 584
NdeII GATC 3 cut(s) 111, 157, 255
NlaIII CATG 2 cut(s) 145, 496
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 59, 122, 322, 512
PfoI TCCNGGA 1 cut(s) 582
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 425, 435
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 2 cut(s) 425, 435
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 149, 317
RsaNI GTAC 2 cut(s) 148, 316
Sau3AI GATC 3 cut(s) 111, 157, 255
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 427, 437, 584
SexAI ACCWGGT 1 cut(s) 425
SinI GGWCC 1 cut(s) 376
Sse9I AATT 2 cut(s) 226, 260
SsiI CCGC 2 cut(s) 482, 532
SspI AATATT 1 cut(s) 268
SspMI CTAG 3 cut(s) 212, 446, 552
StyD4I CCNGG 3 cut(s) 425, 435, 582
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 226, 260
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 4 cut(s) 59, 122, 322, 512
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 3 cut(s) 212, 446, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.