RchiOBHm_Chr6g0263861

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006913
Physical Location & Seq
Reverse (-)
18796252 .. 18797643
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23665

Sequence Viewer

Length: 1392 bp
ATGGCCAATTATGGTGGCAGAAAAATTGTGAAAGAGGTGGAGATAAGTGTGCCTTACATGACCAACTATGGTGCTAGAGAAAGTGTGAAAGAAGTGGAGAAAAGCGAGCCTTACATGACCAATTATGGAGCTAGAAAAATTGTGAAAGAAGTGGAGGTAAGCGAGCCATACATGACCAACTACGGAGCTAGAGAAAGTGTGGAAGCAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGTTAGAGAAAGTGCAGTTGAGGAAAGCGAGCCTTCCATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGAAACCTTACATGACGAACTATGGAGCTAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGGAGCCTTACATGACCAATTATGGAAATAAAGAGGCTTCTTACATTACCCAATATGGAAACAAAGAAGACATAAAAGAAACAGAGGCTTCTTACATAACCCAGTACGGAGACAAAGAAGCTGAGACTACTTACATAAATCAGTACGGAAACAAAGAAACTGAGGCTTCTTACATAACCCAGTATGGCAAACAAGGAGGAGAAAACAAGGTACAGAAGCCAGTTCCATCCGCCCATGAGCACCATGATCATATGCATGCACATTCATCATCTCGCAATGAGGCACACGAGCAAGGCTTTTTCACTTTGGTTGATTTCCATAAGGGGAGTACAATGCCACTCAACTTCCCAAACCAAGACCATTCTCCTTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACTCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGTGCTACTTCACTAGAATCAATGAATGATTTCGTTCACAAAATCATTGGTTCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCACTTTGAGAGCGACACCAGGTTCTTCCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

463

Amino Acids

52.33

Weight (kDa)

5.78

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 242 - 455 6.6e-72 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 879
AciI CCGC 3 cut(s) 657, 1241, 1291
AclWI GGATC 2 cut(s) 865, 1022
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1019
AfaI GTAC 6 cut(s) 533, 572, 639, 757, 908, 1076
AfiI CCNNNNNNNGG 2 cut(s) 941, 1297
AgsI TTSAA 1 cut(s) 1024
AjnI CCWGG 2 cut(s) 1184, 1194
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 4 cut(s) 531, 545, 941, 1204
AlwI GGATC 2 cut(s) 865, 1022
AlwNI CAGNNNCTG 1 cut(s) 1385
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 1019
Asp700I GAANNNNTTC 1 cut(s) 986
AspS9I GGNCC 1 cut(s) 1135
AsuC2I CCSGG 1 cut(s) 1343
AsuHPI GGTGA 2 cut(s) 956, 1223
AvaII GGWCC 1 cut(s) 1135
BaeI ACNNNNGTAYC 2 cut(s) 1285, 1318
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 2 cut(s) 713, 885
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 669
BbvCI CCTCAGC 1 cut(s) 426
BccI CCATC 3 cut(s) 661, 944, 1137
BceAI ACGGC 1 cut(s) 1220
BciT130I CCWGG 2 cut(s) 1186, 1196
BclI TGATCA 2 cut(s) 673, 916
BcnI CCSGG 1 cut(s) 1343
BcoDI GTCTC 4 cut(s) 531, 545, 941, 1204
BfaI CTAG 7 cut(s) 75, 132, 189, 348, 971, 1205, 1311
BfmI CTRYAG 2 cut(s) 297, 405
Bme1390I CCNGG 3 cut(s) 1186, 1196, 1343
Bme18I GGWCC 1 cut(s) 1135
BmgT120I GGNCC 1 cut(s) 1135
BmiI GGNNCC 2 cut(s) 432, 1137
BmrFI CCNGG 3 cut(s) 1186, 1196, 1343
BmrI ACTGGG 2 cut(s) 523, 601
BmuI ACTGGG 2 cut(s) 523, 601
BpiI GAAGAC 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 1343
BsaI GGTCTC 2 cut(s) 941, 1204
BsaWI WCCGGW 2 cut(s) 1132, 1324
BsaXI ACNNNNNCTCC 4 cut(s) 840, 870, 1212, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 941, 1297
Bse1I ACTGG 3 cut(s) 529, 607, 647
Bse3DI GCAATG 1 cut(s) 709
BseBI CCWGG 2 cut(s) 1186, 1196
BseGI GGATG 2 cut(s) 653, 1129
BseLI CCNNNNNNNGG 2 cut(s) 941, 1297
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 5 cut(s) 309, 417, 540, 579, 1294
BseNI ACTGG 3 cut(s) 529, 607, 647
BseRI GAGGAG 3 cut(s) 443, 639, 1309
BseYI CCCAGC 1 cut(s) 1372
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 879
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 3 cut(s) 1133, 1325, 1343
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 2 cut(s) 941, 1297
BsmAI GTCTC 4 cut(s) 531, 545, 941, 1204
BsmFI GGGAC 1 cut(s) 1121
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 941, 1204
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 673, 870, 916, 1014
BspACI CCGC 3 cut(s) 657, 1241, 1291
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 310, 418, 541, 580, 1293
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 432, 1137
BspPI GGATC 2 cut(s) 865, 1022
BspTNI GGTCTC 2 cut(s) 941, 1204
BsrDI GCAATG 1 cut(s) 709
BsrI ACTGG 3 cut(s) 529, 607, 647
BssMI GATC 4 cut(s) 673, 870, 916, 1014
BssSI CACGAG 2 cut(s) 713, 885
Bst2BI CACGAG 2 cut(s) 713, 885
Bst2UI CCWGG 2 cut(s) 1186, 1196
Bst6I CTCTTC 1 cut(s) 869
BstC8I GCNNGC 5 cut(s) 107, 164, 272, 684, 926
BstDEI CTNAG 7 cut(s) 318, 426, 549, 588, 804, 1275, 1280
BstF5I GGATG 2 cut(s) 653, 1129
BstFNI CGCG 1 cut(s) 879
BstKTI GATC 4 cut(s) 676, 873, 919, 1017
BstMAI GTCTC 4 cut(s) 531, 545, 941, 1204
BstMBI GATC 4 cut(s) 673, 870, 916, 1014
BstNI CCWGG 2 cut(s) 1186, 1196
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 3 cut(s) 1184, 1194, 1341
BstSFI CTRYAG 2 cut(s) 297, 405
BstUI CGCG 1 cut(s) 879
BstV2I GAAGAC 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 901
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 653, 1129
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 5 cut(s) 107, 164, 272, 684, 926
CaiI CAGNNNCTG 1 cut(s) 1385
Cfr13I GGNCC 1 cut(s) 1135
CsiI ACCWGGT 1 cut(s) 1184
Csp6I GTAC 6 cut(s) 532, 571, 638, 756, 907, 1075
CspCI CAANNNNNGTGG 1 cut(s) 30
CviQI GTAC 6 cut(s) 532, 571, 638, 756, 907, 1075
DdeI CTNAG 7 cut(s) 318, 426, 549, 588, 804, 1275, 1280
DpnI GATC 4 cut(s) 675, 872, 918, 1016
DpnII GATC 4 cut(s) 673, 870, 916, 1014
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
EciI GGCGGA 1 cut(s) 646
Eco31I GGTCTC 2 cut(s) 941, 1204
Eco47I GGWCC 1 cut(s) 1135
EcoRII CCWGG 2 cut(s) 1184, 1194
EcoT22I ATGCAT 1 cut(s) 684
FaqI GGGAC 1 cut(s) 1121
FauNDI CATATG 1 cut(s) 678
FbaI TGATCA 2 cut(s) 673, 916
FokI GGATG 2 cut(s) 640, 1116
FspBI CTAG 7 cut(s) 75, 132, 189, 348, 971, 1205, 1311
GsaI CCCAGC 1 cut(s) 1376
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 1133, 1325, 1343
HinfI GANTC 7 cut(s) 818, 881, 890, 974, 1081, 1271, 1363
HpaII CCGG 3 cut(s) 1133, 1325, 1343
HphI GGTGA 2 cut(s) 956, 1223
Hpy166II GTNNAC 3 cut(s) 909, 994, 1077
Hpy188I TCNGA 1 cut(s) 1264
Hpy188III TCNNGA 3 cut(s) 868, 887, 1085
Hpy8I GTNNAC 3 cut(s) 909, 994, 1077
HpyAV CCTTC 4 cut(s) 285, 364, 833, 863
HpyCH4V TGCA 3 cut(s) 257, 682, 686
HpyF3I CTNAG 7 cut(s) 318, 426, 549, 588, 804, 1275, 1280
Ksp22I TGATCA 2 cut(s) 673, 916
Kzo9I GATC 4 cut(s) 673, 870, 916, 1014
LmnI GCTCC 6 cut(s) 128, 185, 293, 344, 401, 430
MabI ACCWGGT 1 cut(s) 1184
MaeI CTAG 7 cut(s) 75, 132, 189, 348, 971, 1205, 1311
MaeIII GTNAC 1 cut(s) 887
MalI GATC 4 cut(s) 675, 872, 918, 1016
MboI GATC 4 cut(s) 673, 870, 916, 1014
MboII GAAGA 5 cut(s) 506, 856, 1100, 1183, 1330
MhlI GDGCHC 1 cut(s) 669
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 7, 24, 121, 138, 445, 1019
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 986
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 3 cut(s) 1133, 1325, 1343
MspR9I CCNGG 3 cut(s) 1186, 1196, 1343
MvaI CCWGG 2 cut(s) 1186, 1196
MvnI CGCG 1 cut(s) 879
NciI CCSGG 1 cut(s) 1343
NdeI CATATG 1 cut(s) 678
NdeII GATC 4 cut(s) 673, 870, 916, 1014
NlaIV GGNNCC 2 cut(s) 432, 1137
NmuCI GTSAC 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 684
NspI RCATGY 1 cut(s) 686
PaeI GCATGC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 883
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 6 cut(s) 818, 881, 974, 1081, 1271, 1363
PfoI TCCNGGA 1 cut(s) 1341
PleI GAGTC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 884
Psp6I CCWGG 2 cut(s) 1184, 1194
PspFI CCCAGC 1 cut(s) 1372
PspGI CCWGG 2 cut(s) 1184, 1194
PspN4I GGNNCC 2 cut(s) 432, 1137
PspPI GGNCC 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 1385
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 6 cut(s) 533, 572, 639, 757, 908, 1076
RsaNI GTAC 6 cut(s) 532, 571, 638, 756, 907, 1075
RseI CAYNNNNRTG 1 cut(s) 681
Sau3AI GATC 4 cut(s) 673, 870, 916, 1014
Sau96I GGNCC 1 cut(s) 1135
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 3 cut(s) 1186, 1196, 1343
SduI GDGCHC 1 cut(s) 669
SexAI ACCWGGT 1 cut(s) 1184
SfcI CTRYAG 2 cut(s) 297, 405
SinI GGWCC 1 cut(s) 1135
SmiMI CAYNNNNRTG 1 cut(s) 681
SphI GCATGC 1 cut(s) 686
Sse9I AATT 6 cut(s) 7, 24, 121, 138, 445, 1019
SsiI CCGC 3 cut(s) 657, 1241, 1291
SspI AATATT 1 cut(s) 1027
SspMI CTAG 7 cut(s) 75, 132, 189, 348, 971, 1205, 1311
StyD4I CCNGG 3 cut(s) 1184, 1194, 1341
TaqI TCGA 1 cut(s) 869
TasI AATT 6 cut(s) 7, 24, 121, 138, 445, 1019
TatI WGTACW 2 cut(s) 755, 1074
TfiI GAWTC 6 cut(s) 818, 881, 974, 1081, 1271, 1363
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 887
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 2 cut(s) 681, 995
TspGWI ACGGA 3 cut(s) 198, 549, 588
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 1135
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 7 cut(s) 75, 132, 189, 348, 971, 1205, 1311
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.