Rroxscaffold_7G00203870

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006913
Physical Location & Seq
Forward (+)
52903625 .. 52906234
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203870.1

Sequence Viewer

Length: 1797 bp
ATGGGCGTTCGATTCATCATCAGCTTCTGCCTTCTGTTAGTAGTGTGTCGTGAGGCCAATGGAGCAAGGAATGTACTCAAACAGGAGCCAAAAGAAGAAGATGCACCATACATTACTAGTTATGGAATCGAAGAAGGCATAAAAGAGGTCGAAGCTCCTTACATAACTCAGTATGGTACAAAAGAAGGCAAAGTGGAAGTGGTCGAAGCTCCTTACATAACTCAGTATGGTACAGAAGAAGGCAAAGTGGAAGAGGTCGAAGCTCCTTACATAACCGGGTACATTTCTACGGAAGCCAACACCAAGGAAGTAGAGAAGCCATACATAACAGGATATATTTCCACACAAGATACGAAGGGCAGAAAGGAAGTAGAGGCGCCTTACATCACTGGATACATTTCCAAACGAGACACAAAGAGCACAAAAGATGTAGAGGCACCTTACATAACACAATATCAAAACAAAGAGGCTTCCTACAATACCCAGTATGGAACGAAAGAAGGAAAGAATAAGGTAGAGGAGCCTTACCTAACTGGTTACAAGACCACAAGGAAGTCGAAAGAGGTAGAAGCGCCTTACATAACAGGGTACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTACATAACCGGATACATTTCCGCACAAGGCAGCAAGCTCAAGAAAGAGGTAGAGGCACCTTACATAACCGGGTACATTTCTGCACAAGGCACAAATGGCAAGGAGGTAGAGGCGCCTTACATAACTGGATACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTACATCACCGGATACATTTCCGCACAAGGAACAAAGGGCAAGAAAGAGGTAGAGGCGCCTTATATAACTGGATATATTTCCGCACAACGCACAAAGGGCAAGAAGGAAGTAGAGGCGCCTTATATAACCGGATATATTTCTGCACAAGGCGCGAAAAACTGCGAACATCAGAAGCATGTACATCCACCTTCCCGAAATGGAGCAAAGGATGTGGTTTCGGGTAAGGAGTTACCTATGGAACATCAACATCATGATCATATGCATGCACATTCATCATCCCCCCTGGATCATACTGAGGCACTCAAGCAAGGATTTTTTACTTTTGAGGATTTCTACAAAGGGAATGCACTGCCACTCAACTTCCCCAAACAAGAGCATTCTCGTTTCTTGCCTAAAGCAACAGCCGATTCCATTCCATTTTCAACATCACAGCTTCCACACCTTCTCCAACTCTTCTCAACCCCACGCGACTCTCGTGACGCAAAACACATGGCCTGGACACTCGACCAGTGCGAACTCAAACCCATTAACGGGGAGACTAAGTTCTGTGCTACTTCTCTAGAATCCATGATAGATTTTGTTCAAAAAATCATTGGTTCAGGGGTCAAATTCAATATTCTCTCTACCACCCACCCAGAAACCTCAACTGCCATCACACAAAAGTACACTATCTTGGATGAGCCCAAACAAGTCTTAGCTTCCAAAATGGTCTTTTGCCACCCGGTCCCTTATCCTTATGCTGTTTTCTTCTGCCACCACTTTGAGAACGATACCAAGTTCTTCAAGGTTTCACTGGGAGGCGAGAACGGAGATAAGGTGGAAGCCGTAGCTGTTTGCCACATGGACACTTCTGATTGGGACCCTAACCACAGTTTGTTTCGCTTATTGGGAATCAAGGCTGGTGCTTCTTCACCAGTGTGCCATTTCTTCCCTGGAAATCATCTAGTTTGGATTCCATCATCACCAACAACAGCTACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

598

Amino Acids

66.67

Weight (kDa)

6.51

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 376 - 589 2.9e-74 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 8 cut(s) 376, 436, 631, 691, 748, 808, 868, 928
AccII CGCG 2 cut(s) 965, 1281
AciI CCGC 5 cut(s) 597, 657, 774, 834, 894
AclWI GGATC 1 cut(s) 1107
AcsI RAATTY 1 cut(s) 1421
AcyI GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
AfaI GTAC 8 cut(s) 75, 178, 232, 281, 590, 710, 993, 1478
AfiI CCNNNNNNNGG 2 cut(s) 1343, 1344
AgsI TTSAA 4 cut(s) 1236, 1397, 1426, 1597
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 3 cut(s) 1095, 1307, 1744
AleI CACNNNNGTG 1 cut(s) 1729
AloI GAACNNNNNNTCC 2 cut(s) 1340, 1372
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 2 cut(s) 402, 1343
AlwI GGATC 1 cut(s) 1107
AlwNI CAGNNNCTG 1 cut(s) 27
AoxI GGCC 2 cut(s) 54, 1305
ApeKI GCWGC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 1421
AspLEI GCGC 8 cut(s) 379, 574, 634, 751, 811, 871, 931, 965
AspS9I GGNCC 2 cut(s) 1537, 1672
AsuC2I CCSGG 3 cut(s) 277, 706, 1535
AsuHPI GGTGA 3 cut(s) 811, 1716, 1767
AvaII GGWCC 2 cut(s) 1537, 1672
BanI GGYRCC 8 cut(s) 376, 436, 631, 691, 748, 808, 868, 928
BanII GRGCYC 1 cut(s) 1497
BauI CACGAG 1 cut(s) 1287
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 678
BccI CCATC 2 cut(s) 1472, 1777
BceAI ACGGC 1 cut(s) 1622
BciT130I CCWGG 3 cut(s) 1097, 1309, 1746
BciVI GTATCC 4 cut(s) 386, 641, 758, 818
BclI TGATCA 1 cut(s) 1066
BcnI CCSGG 3 cut(s) 277, 706, 1535
BcoDI GTCTC 2 cut(s) 402, 1343
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 3 cut(s) 117, 1373, 1757
BfoI RGCGCY 7 cut(s) 380, 575, 635, 752, 812, 872, 932
BfuI GTATCC 4 cut(s) 386, 641, 758, 818
BisI GCNGC 1 cut(s) 667
BlsI GCNGC 1 cut(s) 668
Bme1390I CCNGG 6 cut(s) 277, 706, 1097, 1309, 1535, 1746
Bme18I GGWCC 2 cut(s) 1537, 1672
BmgT120I GGNCC 2 cut(s) 1537, 1672
BmrFI CCNGG 6 cut(s) 277, 706, 1097, 1309, 1535, 1746
BmrI ACTGGG 2 cut(s) 478, 1616
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 2 cut(s) 478, 1616
BpuEI CTTGAG 4 cut(s) 599, 659, 776, 1100
BpuMI CCSGG 3 cut(s) 277, 706, 1535
BsaHI GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
BsaJI CCNNGG 3 cut(s) 303, 1095, 1744
BsaWI WCCGGW 3 cut(s) 644, 821, 941
BsaXI ACNNNNNCTCC 6 cut(s) 1242, 1272, 1340, 1370, 1614, 1644
Bsc4I CCNNNNNNNGG 2 cut(s) 1343, 1344
Bse1I ACTGG 8 cut(s) 394, 484, 538, 766, 886, 1321, 1611, 1727
BseBI CCWGG 3 cut(s) 1097, 1309, 1746
BseDI CCNNGG 3 cut(s) 303, 1095, 1744
BseGI GGATG 4 cut(s) 994, 1027, 1088, 1495
BseLI CCNNNNNNNGG 2 cut(s) 1343, 1344
BseMII CTCAG 3 cut(s) 182, 236, 1098
BseNI ACTGG 8 cut(s) 394, 484, 538, 766, 886, 1321, 1611, 1727
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 678
BsgI GTGCAG 2 cut(s) 702, 939
Bsh1236I CGCG 2 cut(s) 965, 1281
BshFI GGCC 2 cut(s) 56, 1307
BshNI GGYRCC 8 cut(s) 376, 436, 631, 691, 748, 808, 868, 928
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 6 cut(s) 276, 645, 705, 822, 942, 1535
BslFI GGGAC 2 cut(s) 1523, 1685
BslI CCNNNNNNNGG 2 cut(s) 1343, 1344
BsmAI GTCTC 2 cut(s) 402, 1343
BsmFI GGGAC 2 cut(s) 1523, 1685
BsmI GAATGC 2 cut(s) 1162, 1189
BsnI GGCC 2 cut(s) 56, 1307
Bsp1286I GDGCHC 2 cut(s) 422, 1497
Bsp1407I TGTACA 1 cut(s) 991
Bsp143I GATC 2 cut(s) 1066, 1099
BspACI CCGC 5 cut(s) 597, 657, 774, 834, 894
BspANI GGCC 2 cut(s) 56, 1307
BspCNI CTCAG 3 cut(s) 181, 235, 1099
BspFNI CGCG 2 cut(s) 965, 1281
BspHI TCATGA 1 cut(s) 1063
BspPI GGATC 1 cut(s) 1107
BspT107I GGYRCC 8 cut(s) 376, 436, 631, 691, 748, 808, 868, 928
BsrGI TGTACA 1 cut(s) 991
BsrI ACTGG 8 cut(s) 394, 484, 538, 766, 886, 1321, 1611, 1727
BssECI CCNNGG 3 cut(s) 303, 1095, 1744
BssMI GATC 2 cut(s) 1066, 1099
BssNI GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
BssSI CACGAG 1 cut(s) 1287
BssT1I CCWWGG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 1287
Bst2UI CCWGG 3 cut(s) 1097, 1309, 1746
Bst4CI ACNGT 1 cut(s) 1685
Bst6I CTCTTC 2 cut(s) 246, 1271
BstACI GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
BstAUI TGTACA 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 671, 1077
BstDEI CTNAG 5 cut(s) 168, 222, 1107, 1353, 1507
BstF5I GGATG 4 cut(s) 994, 1027, 1088, 1495
BstFNI CGCG 2 cut(s) 965, 1281
BstH2I RGCGCY 7 cut(s) 380, 575, 635, 752, 812, 872, 932
BstHHI GCGC 8 cut(s) 379, 574, 634, 751, 811, 871, 931, 965
BstKTI GATC 2 cut(s) 1069, 1102
BstMAI GTCTC 2 cut(s) 402, 1343
BstMBI GATC 2 cut(s) 1066, 1099
BstMWI GCNNNNNNNGC 4 cut(s) 62, 732, 909, 962
BstNI CCWGG 3 cut(s) 1097, 1309, 1746
BstNSI RCATGY 2 cut(s) 992, 1079
BstSCI CCNGG 6 cut(s) 275, 704, 1095, 1307, 1533, 1744
BstUI CGCG 2 cut(s) 965, 1281
BstV1I GCAGC 1 cut(s) 678
BsuI GTATCC 4 cut(s) 386, 641, 758, 818
BsuRI GGCC 2 cut(s) 56, 1307
BtsCI GGATG 4 cut(s) 994, 1027, 1088, 1495
BtsI GCAGTG 1 cut(s) 1160
BtsIMutI CAGTG 5 cut(s) 387, 1160, 1328, 1604, 1734
Cac8I GCNNGC 2 cut(s) 671, 1077
CaiI CAGNNNCTG 1 cut(s) 27
CciI TCATGA 1 cut(s) 1063
CfoI GCGC 8 cut(s) 379, 574, 634, 751, 811, 871, 931, 965
Cfr13I GGNCC 2 cut(s) 1537, 1672
CseI GACGC 1 cut(s) 1301
Csp6I GTAC 8 cut(s) 74, 177, 231, 280, 589, 709, 992, 1477
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviAII CATG 6 cut(s) 989, 1064, 1076, 1303, 1381, 1654
CviQI GTAC 8 cut(s) 74, 177, 231, 280, 589, 709, 992, 1477
DdeI CTNAG 5 cut(s) 168, 222, 1107, 1353, 1507
DinI GGCGCC 6 cut(s) 378, 633, 750, 810, 870, 930
DpnI GATC 2 cut(s) 1068, 1101
DpnII GATC 2 cut(s) 1066, 1099
Eam1104I CTCTTC 2 cut(s) 246, 1271
EarI CTCTTC 2 cut(s) 246, 1271
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 1497
Eco47I GGWCC 2 cut(s) 1537, 1672
EcoO109I RGGNCCY 1 cut(s) 1672
EcoRII CCWGG 3 cut(s) 1095, 1307, 1744
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 1497
EgeI GGCGCC 6 cut(s) 378, 633, 750, 810, 870, 930
EheI GGCGCC 6 cut(s) 378, 633, 750, 810, 870, 930
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 6 cut(s) 992, 1067, 1079, 1306, 1384, 1657
FaqI GGGAC 2 cut(s) 1523, 1685
FatI CATG 6 cut(s) 988, 1063, 1075, 1302, 1380, 1653
FauNDI CATATG 1 cut(s) 1071
FbaI TGATCA 1 cut(s) 1066
Fnu4HI GCNGC 1 cut(s) 667
FokI GGATG 4 cut(s) 981, 1034, 1075, 1502
FriOI GRGCYC 1 cut(s) 1497
Fsp4HI GCNGC 1 cut(s) 667
FspBI CTAG 3 cut(s) 117, 1373, 1757
GlaI GCGC 8 cut(s) 378, 573, 633, 750, 810, 870, 930, 964
GluI GCNGC 1 cut(s) 667
HaeII RGCGCY 7 cut(s) 380, 575, 635, 752, 812, 872, 932
HaeIII GGCC 2 cut(s) 56, 1307
HapII CCGG 6 cut(s) 276, 645, 705, 822, 942, 1535
HgaI GACGC 1 cut(s) 1301
HhaI GCGC 8 cut(s) 379, 574, 634, 751, 811, 871, 931, 965
Hin1I GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
Hin1II CATG 6 cut(s) 992, 1067, 1079, 1306, 1384, 1657
Hin6I GCGC 8 cut(s) 377, 572, 632, 749, 809, 869, 929, 963
HinP1I GCGC 8 cut(s) 377, 572, 632, 749, 809, 869, 929, 963
HinfI GANTC 7 cut(s) 12, 126, 1220, 1283, 1376, 1704, 1765
HpaII CCGG 6 cut(s) 276, 645, 705, 822, 942, 1535
HphI GGTGA 3 cut(s) 811, 1716, 1767
Hpy166II GTNNAC 1 cut(s) 1479
Hpy188I TCNGA 2 cut(s) 984, 1666
Hpy188III TCNNGA 8 cut(s) 50, 616, 676, 793, 1005, 1064, 1289, 1373
Hpy8I GTNNAC 1 cut(s) 1479
HpyCH4III ACNGT 1 cut(s) 1685
HpyCH4V TGCA 6 cut(s) 104, 719, 956, 1075, 1079, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 732, 909, 962
HpyF3I CTNAG 5 cut(s) 168, 222, 1107, 1353, 1507
Hsp92I GRCGYC 6 cut(s) 377, 632, 749, 809, 869, 929
Hsp92II CATG 6 cut(s) 992, 1067, 1079, 1306, 1384, 1657
HspAI GCGC 8 cut(s) 377, 572, 632, 749, 809, 869, 929, 963
KasI GGCGCC 6 cut(s) 376, 631, 748, 808, 868, 928
KflI GGGWCCC 1 cut(s) 1672
Ksp22I TGATCA 1 cut(s) 1066
Kzo9I GATC 2 cut(s) 1066, 1099
LmnI GCTCC 7 cut(s) 62, 85, 160, 214, 268, 520, 1013
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 117, 1373, 1757
MaeIII GTNAC 3 cut(s) 536, 1041, 1289
MalI GATC 2 cut(s) 1068, 1101
MboI GATC 2 cut(s) 1066, 1099
MhlI GDGCHC 2 cut(s) 422, 1497
MluCI AATT 1 cut(s) 1421
Mly113I GGCGCC 6 cut(s) 377, 632, 749, 809, 869, 929
MlyI GAGTC 1 cut(s) 1277
MmeI TCCRAC 1 cut(s) 1285
Mph1103I ATGCAT 1 cut(s) 1077
MseI TTAA 2 cut(s) 1341, 1795
MslI CAYNNNNRTG 2 cut(s) 1074, 1729
MspI CCGG 6 cut(s) 276, 645, 705, 822, 942, 1535
MspR9I CCNGG 6 cut(s) 277, 706, 1097, 1309, 1535, 1746
Mva1269I GAATGC 2 cut(s) 1162, 1189
MvaI CCWGG 3 cut(s) 1097, 1309, 1746
MvnI CGCG 2 cut(s) 965, 1281
MwoI GCNNNNNNNGC 4 cut(s) 62, 732, 909, 962
NarI GGCGCC 6 cut(s) 377, 632, 749, 809, 869, 929
NciI CCSGG 3 cut(s) 277, 706, 1535
NdeI CATATG 1 cut(s) 1071
NdeII GATC 2 cut(s) 1066, 1099
NlaIII CATG 6 cut(s) 992, 1067, 1079, 1306, 1384, 1657
NmuCI GTSAC 1 cut(s) 1289
NsiI ATGCAT 1 cut(s) 1077
NspI RCATGY 2 cut(s) 992, 1079
OliI CACNNNNGTG 1 cut(s) 1729
PaeI GCATGC 1 cut(s) 1079
PagI TCATGA 1 cut(s) 1063
PcsI WCGNNNNNNNCGW 2 cut(s) 1285, 1323
PctI GAATGC 2 cut(s) 1162, 1189
PfeI GAWTC 6 cut(s) 12, 126, 1220, 1376, 1704, 1765
PkrI GCNGC 1 cut(s) 668
PleI GAGTC 1 cut(s) 1277
PluTI GGCGCC 6 cut(s) 380, 635, 752, 812, 872, 932
PpsI GAGTC 1 cut(s) 1277
PpuMI RGGWCCY 1 cut(s) 1672
Psp5II RGGWCCY 1 cut(s) 1672
Psp6I CCWGG 3 cut(s) 1095, 1307, 1744
PspGI CCWGG 3 cut(s) 1095, 1307, 1744
PspPI GGNCC 2 cut(s) 1537, 1672
PspPPI RGGWCCY 1 cut(s) 1672
PstNI CAGNNNCTG 1 cut(s) 27
RsaI GTAC 8 cut(s) 75, 178, 232, 281, 590, 710, 993, 1478
RsaNI GTAC 8 cut(s) 74, 177, 231, 280, 589, 709, 992, 1477
RseI CAYNNNNRTG 2 cut(s) 1074, 1729
SaqAI TTAA 2 cut(s) 1341, 1795
SatI GCNGC 1 cut(s) 667
Sau3AI GATC 2 cut(s) 1066, 1099
Sau96I GGNCC 2 cut(s) 1537, 1672
SchI GAGTC 1 cut(s) 1277
ScrFI CCNGG 6 cut(s) 277, 706, 1097, 1309, 1535, 1746
SduI GDGCHC 2 cut(s) 422, 1497
SfaNI GCATC 1 cut(s) 91
SfoI GGCGCC 6 cut(s) 378, 633, 750, 810, 870, 930
SinI GGWCC 2 cut(s) 1537, 1672
SmiMI CAYNNNNRTG 2 cut(s) 1074, 1729
SmlI CTYRAG 4 cut(s) 614, 674, 791, 1115
SmoI CTYRAG 4 cut(s) 614, 674, 791, 1115
SpeI ACTAGT 1 cut(s) 116
SphI GCATGC 1 cut(s) 1079
Sse9I AATT 1 cut(s) 1421
SsiI CCGC 5 cut(s) 597, 657, 774, 834, 894
SspDI GGCGCC 6 cut(s) 376, 631, 748, 808, 868, 928
SspI AATATT 1 cut(s) 1429
SspMI CTAG 3 cut(s) 117, 1373, 1757
StyD4I CCNGG 6 cut(s) 275, 704, 1095, 1307, 1533, 1744
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 1685
TaqI TCGA 7 cut(s) 10, 129, 150, 204, 258, 557, 1317
TasI AATT 1 cut(s) 1421
TatI WGTACW 3 cut(s) 73, 991, 1476
TfiI GAWTC 6 cut(s) 12, 126, 1220, 1376, 1704, 1765
Tru1I TTAA 2 cut(s) 1341, 1795
Tru9I TTAA 2 cut(s) 1341, 1795
TscAI CASTG 5 cut(s) 394, 1167, 1328, 1611, 1734
TseFI GTSAC 1 cut(s) 1289
TseI GCWGC 1 cut(s) 666
Tsp45I GTSAC 1 cut(s) 1289
TspDTI ATGAA 2 cut(s) 4, 1074
TspGWI ACGGA 2 cut(s) 305, 1635
TspRI CASTG 5 cut(s) 394, 1167, 1328, 1611, 1734
VpaK11BI GGWCC 2 cut(s) 1537, 1672
XapI RAATTY 1 cut(s) 1421
XbaI TCTAGA 1 cut(s) 1372
XceI RCATGY 2 cut(s) 992, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 1742
XspI CTAG 3 cut(s) 117, 1373, 1757
Zsp2I ATGCAT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.