Rw6G010980

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006913
Physical Location & Seq
Reverse (-)
19282673 .. 19284937
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010980.1

Sequence Viewer

Length: 1614 bp
ATGGGCTTTCAATTCATCATCTTCTGCCTTCTGTTCTTAGTGTGTCCTTATGCCAGTGGAGCATGGGACGTAAGCACAAAACAAGTGGAGATCAATAGCGAGCCCTACGTCACAAATTATGGAGCCAGGAAAATTGTCAAAGAGTTGGAGGTGAGTGAGCCTTATATGGCCAATTATGGTTGCAGAAAAATTGTGAAAGAGGTGGAGATAAGTGTGCCTTACATGACCAACTATGGTGCTAGAGAAAGTGTGAAAGAAGTGGAGAAAAGCGAGCCTTACATGACCAATTATGGAGCTAGAAAATTTGTGAGAGAAGTGGAAGTAAGCGAGCCATACATGACCAACTACGGAGCTAGAGAAAGTGTGGAAACAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGTTAGAGAAAGTGCAGTTGAGGCAAGTGAGCCTTCCATGACCAACTATGGAGCTAGAAAAAGTGTGAAAGAAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGGTGAGAAACCTTACATGACGAACTATGGAGCTAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGGAGCCTTACATGACCAATTATGGAAATAAAGAGGCATCTTACATTACCCAATATGGAAACAAAGAAGACATAAAAGAAACACAGGCTTCTTACATAACCCAGTGCGGAGACAAAGAAGCTGAGGCTACTTACATAAATCAGTACGGAAACAAAGAAACTGAGGCTTCTTACATAACCCAGTATGGCACACAAGGAGGAGAAAACAAAGTACAGAAGCCAGTTCCATCCGCCCATGAGCAGCATGATCATATGCATGCACATTCATCATCTCGCAATGAGGCACACGAGCAAGGCTTTTTCACTTTAGTTGATTTCCATAAGGGGAGTACAATGCCACTCAACTTCCCAAACCAAGACCATTCTCCCTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACGCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGGGCTACTTCGCTAGAGTCAATGAATAATTTCGTTCACAAAATCATTGGTTCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCACTTTGAGAGCGACACCAGGTTCTTCCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

537

Amino Acids

60.85

Weight (kDa)

5.82

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 316 - 529 3.9e-69 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1179
AccII CGCG 1 cut(s) 1101
AciI CCGC 4 cut(s) 756, 879, 1463, 1513
AclWI GGATC 2 cut(s) 1087, 1244
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 2 cut(s) 302, 1241
AcyI GRCGYC 1 cut(s) 1113
AfaI GTAC 5 cut(s) 794, 861, 979, 1130, 1298
AfiI CCNNNNNNNGG 3 cut(s) 1163, 1179, 1519
AgsI TTSAA 2 cut(s) 11, 1246
AjnI CCWGG 3 cut(s) 125, 1406, 1416
Alw26I GTCTC 3 cut(s) 753, 1163, 1426
AlwI GGATC 2 cut(s) 1087, 1244
AlwNI CAGNNNCTG 1 cut(s) 1607
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 889
ApoI RAATTY 2 cut(s) 302, 1241
Asp700I GAANNNNTTC 1 cut(s) 1208
AspS9I GGNCC 1 cut(s) 1357
AsuC2I CCSGG 1 cut(s) 1565
AsuHPI GGTGA 4 cut(s) 163, 551, 1178, 1445
AvaII GGWCC 1 cut(s) 1357
BaeI ACNNNNGTAYC 2 cut(s) 1507, 1540
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 2 cut(s) 935, 1107
BbsI GAAGAC 1 cut(s) 723
BbvCI CCTCAGC 2 cut(s) 648, 771
BbvI GCAGC 1 cut(s) 901
BccI CCATC 3 cut(s) 883, 1166, 1359
BceAI ACGGC 1 cut(s) 1442
BciT130I CCWGG 3 cut(s) 127, 1408, 1418
BclI TGATCA 2 cut(s) 895, 1138
BcnI CCSGG 1 cut(s) 1565
BcoDI GTCTC 3 cut(s) 753, 1163, 1426
BfaI CTAG 8 cut(s) 240, 297, 354, 462, 570, 1193, 1427, 1533
BfmI CTRYAG 2 cut(s) 519, 627
BisI GCNGC 1 cut(s) 890
BlsI GCNGC 1 cut(s) 891
Bme1390I CCNGG 4 cut(s) 127, 1408, 1418, 1565
Bme18I GGWCC 1 cut(s) 1357
BmgT120I GGNCC 1 cut(s) 1357
BmiI GGNNCC 3 cut(s) 124, 654, 1359
BmrFI CCNGG 4 cut(s) 127, 1408, 1418, 1565
BmrI ACTGGG 2 cut(s) 745, 823
BmsI GCATC 1 cut(s) 695
BmuI ACTGGG 2 cut(s) 745, 823
BpiI GAAGAC 1 cut(s) 723
Bpu10I CCTNAGC 2 cut(s) 648, 771
BpuMI CCSGG 1 cut(s) 1565
BsaHI GRCGYC 1 cut(s) 1113
BsaI GGTCTC 2 cut(s) 1163, 1426
BsaWI WCCGGW 2 cut(s) 1354, 1546
BsaXI ACNNNNNCTCC 4 cut(s) 1062, 1092, 1434, 1464
Bsc4I CCNNNNNNNGG 3 cut(s) 1163, 1179, 1519
Bse1I ACTGG 4 cut(s) 54, 751, 829, 869
Bse3DI GCAATG 1 cut(s) 931
BseBI CCWGG 3 cut(s) 127, 1408, 1418
BseGI GGATG 2 cut(s) 875, 1351
BseLI CCNNNNNNNGG 3 cut(s) 1163, 1179, 1519
BseMI GCAATG 1 cut(s) 931
BseMII CTCAG 4 cut(s) 639, 762, 801, 1516
BseNI ACTGG 4 cut(s) 54, 751, 829, 869
BseRI GAGGAG 3 cut(s) 665, 861, 1531
BseXI GCAGC 1 cut(s) 901
BseYI CCCAGC 1 cut(s) 1594
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 3 cut(s) 1355, 1547, 1565
BslFI GGGAC 2 cut(s) 80, 1343
BslI CCNNNNNNNGG 3 cut(s) 1163, 1179, 1519
BsmAI GTCTC 3 cut(s) 753, 1163, 1426
BsmFI GGGAC 2 cut(s) 80, 1343
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 2 cut(s) 1163, 1426
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 5 cut(s) 90, 895, 1092, 1138, 1236
BspACI CCGC 4 cut(s) 756, 879, 1463, 1513
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 4 cut(s) 640, 763, 802, 1515
BspFNI CGCG 1 cut(s) 1101
BspLI GGNNCC 3 cut(s) 124, 654, 1359
BspPI GGATC 2 cut(s) 1087, 1244
BspTNI GGTCTC 2 cut(s) 1163, 1426
BsrDI GCAATG 1 cut(s) 931
BsrI ACTGG 4 cut(s) 54, 751, 829, 869
BssMI GATC 5 cut(s) 90, 895, 1092, 1138, 1236
BssNI GRCGYC 1 cut(s) 1113
BssSI CACGAG 2 cut(s) 935, 1107
Bst2BI CACGAG 2 cut(s) 935, 1107
Bst2UI CCWGG 3 cut(s) 127, 1408, 1418
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 1091
BstACI GRCGYC 1 cut(s) 1113
BstC8I GCNNGC 5 cut(s) 101, 272, 329, 906, 1148
BstDEI CTNAG 7 cut(s) 37, 648, 771, 810, 1026, 1497, 1502
BstF5I GGATG 2 cut(s) 875, 1351
BstFNI CGCG 1 cut(s) 1101
BstKTI GATC 5 cut(s) 93, 898, 1095, 1141, 1239
BstMAI GTCTC 3 cut(s) 753, 1163, 1426
BstMBI GATC 5 cut(s) 90, 895, 1092, 1138, 1236
BstMWI GCNNNNNNNGC 2 cut(s) 59, 428
BstNI CCWGG 3 cut(s) 127, 1408, 1418
BstNSI RCATGY 1 cut(s) 908
BstSCI CCNGG 4 cut(s) 125, 1406, 1416, 1563
BstSFI CTRYAG 2 cut(s) 519, 627
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 1 cut(s) 901
BstV2I GAAGAC 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 1123
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 875, 1351
BtsIMutI CAGTG 3 cut(s) 61, 378, 758
Cac8I GCNNGC 5 cut(s) 101, 272, 329, 906, 1148
CaiI CAGNNNCTG 1 cut(s) 1607
Cfr13I GGNCC 1 cut(s) 1357
CseI GACGC 1 cut(s) 1121
CsiI ACCWGGT 1 cut(s) 1406
Csp6I GTAC 5 cut(s) 793, 860, 978, 1129, 1297
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviQI GTAC 5 cut(s) 793, 860, 978, 1129, 1297
DdeI CTNAG 7 cut(s) 37, 648, 771, 810, 1026, 1497, 1502
DpnI GATC 5 cut(s) 92, 897, 1094, 1140, 1238
DpnII GATC 5 cut(s) 90, 895, 1092, 1138, 1236
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 1091
EarI CTCTTC 1 cut(s) 1091
EciI GGCGGA 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 1163, 1426
Eco47I GGWCC 1 cut(s) 1357
EcoRII CCWGG 3 cut(s) 125, 1406, 1416
EcoT22I ATGCAT 1 cut(s) 906
EcoT38I GRGCYC 1 cut(s) 105
FaqI GGGAC 2 cut(s) 80, 1343
FauNDI CATATG 1 cut(s) 900
FbaI TGATCA 2 cut(s) 895, 1138
Fnu4HI GCNGC 1 cut(s) 890
FokI GGATG 2 cut(s) 862, 1338
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 890
FspBI CTAG 8 cut(s) 240, 297, 354, 462, 570, 1193, 1427, 1533
GluI GCNGC 1 cut(s) 890
GsaI CCCAGC 1 cut(s) 1598
HaeIII GGCC 1 cut(s) 170
HapII CCGG 3 cut(s) 1355, 1547, 1565
HgaI GACGC 1 cut(s) 1121
Hin1I GRCGYC 1 cut(s) 1113
HinfI GANTC 6 cut(s) 1040, 1103, 1196, 1303, 1493, 1585
HpaII CCGG 3 cut(s) 1355, 1547, 1565
HphI GGTGA 4 cut(s) 163, 551, 1178, 1445
Hpy166II GTNNAC 3 cut(s) 1131, 1216, 1299
Hpy188I TCNGA 1 cut(s) 1486
Hpy188III TCNNGA 3 cut(s) 1090, 1109, 1307
Hpy8I GTNNAC 3 cut(s) 1131, 1216, 1299
HpyAV CCTTC 7 cut(s) 38, 450, 530, 586, 1027, 1055, 1085
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 69, 108
HpyCH4V TGCA 4 cut(s) 183, 422, 904, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 428
HpyF3I CTNAG 7 cut(s) 37, 648, 771, 810, 1026, 1497, 1502
HpySE526I ACGT 2 cut(s) 69, 108
Hsp92I GRCGYC 1 cut(s) 1113
Ksp22I TGATCA 2 cut(s) 895, 1138
Kzo9I GATC 5 cut(s) 90, 895, 1092, 1138, 1236
LmnI GCTCC 9 cut(s) 59, 122, 293, 350, 458, 515, 566, 623, 652
Lsp1109I GCAGC 1 cut(s) 901
LweI GCATC 1 cut(s) 695
MabI ACCWGGT 1 cut(s) 1406
MaeI CTAG 8 cut(s) 240, 297, 354, 462, 570, 1193, 1427, 1533
MaeII ACGT 2 cut(s) 69, 108
MaeIII GTNAC 2 cut(s) 109, 1109
MalI GATC 5 cut(s) 92, 897, 1094, 1140, 1238
MboI GATC 5 cut(s) 90, 895, 1092, 1138, 1236
MboII GAAGA 6 cut(s) 13, 728, 1078, 1322, 1405, 1552
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 1205
MmeI TCCRAC 2 cut(s) 126, 1105
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 906
MroXI GAANNNNTTC 1 cut(s) 1208
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 903
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 3 cut(s) 1355, 1547, 1565
MspR9I CCNGG 4 cut(s) 127, 1408, 1418, 1565
MvaI CCWGG 3 cut(s) 127, 1408, 1418
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 2 cut(s) 59, 428
NciI CCSGG 1 cut(s) 1565
NdeI CATATG 1 cut(s) 900
NdeII GATC 5 cut(s) 90, 895, 1092, 1138, 1236
NlaIV GGNNCC 3 cut(s) 124, 654, 1359
NmuCI GTSAC 2 cut(s) 109, 1109
NsiI ATGCAT 1 cut(s) 906
NspI RCATGY 1 cut(s) 908
PaeI GCATGC 1 cut(s) 908
PcsI WCGNNNNNNNCGW 1 cut(s) 1105
PdmI GAANNNNTTC 1 cut(s) 1208
PfeI GAWTC 5 cut(s) 1040, 1103, 1303, 1493, 1585
PflMI CCANNNNNTGG 1 cut(s) 1179
PfoI TCCNGGA 1 cut(s) 1563
PkrI GCNGC 1 cut(s) 891
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
Psp6I CCWGG 3 cut(s) 125, 1406, 1416
PspFI CCCAGC 1 cut(s) 1594
PspGI CCWGG 3 cut(s) 125, 1406, 1416
PspN4I GGNNCC 3 cut(s) 124, 654, 1359
PspPI GGNCC 1 cut(s) 1357
PstNI CAGNNNCTG 1 cut(s) 1607
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 5 cut(s) 794, 861, 979, 1130, 1298
RsaNI GTAC 5 cut(s) 793, 860, 978, 1129, 1297
RseI CAYNNNNRTG 1 cut(s) 903
SatI GCNGC 1 cut(s) 890
Sau3AI GATC 5 cut(s) 90, 895, 1092, 1138, 1236
Sau96I GGNCC 1 cut(s) 1357
SchI GAGTC 1 cut(s) 1205
ScrFI CCNGG 4 cut(s) 127, 1408, 1418, 1565
SduI GDGCHC 1 cut(s) 105
SexAI ACCWGGT 1 cut(s) 1406
SfaNI GCATC 1 cut(s) 695
SfcI CTRYAG 2 cut(s) 519, 627
SinI GGWCC 1 cut(s) 1357
SmiMI CAYNNNNRTG 1 cut(s) 903
SphI GCATGC 1 cut(s) 908
SsiI CCGC 4 cut(s) 756, 879, 1463, 1513
SspI AATATT 1 cut(s) 1249
SspMI CTAG 8 cut(s) 240, 297, 354, 462, 570, 1193, 1427, 1533
StyD4I CCNGG 4 cut(s) 125, 1406, 1416, 1563
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 72, 111
TaqI TCGA 1 cut(s) 1091
TatI WGTACW 3 cut(s) 859, 977, 1296
TfiI GAWTC 5 cut(s) 1040, 1103, 1303, 1493, 1585
TscAI CASTG 3 cut(s) 61, 378, 758
TseFI GTSAC 2 cut(s) 109, 1109
TseI GCWGC 1 cut(s) 889
Tsp45I GTSAC 2 cut(s) 109, 1109
TspDTI ATGAA 3 cut(s) 4, 903, 1217
TspGWI ACGGA 2 cut(s) 363, 810
TspRI CASTG 3 cut(s) 61, 378, 758
Van91I CCANNNNNTGG 1 cut(s) 1179
VpaK11BI GGWCC 1 cut(s) 1357
XapI RAATTY 2 cut(s) 302, 1241
XceI RCATGY 1 cut(s) 908
XmnI GAANNNNTTC 1 cut(s) 1208
XspI CTAG 8 cut(s) 240, 297, 354, 462, 570, 1193, 1427, 1533
Zsp2I ATGCAT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.