Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006913

Physical Location & Seq

Genomic Coordinates Forward (+)

13134316 .. 13138307

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGGCATCTAGATTCATAATCTTCTGTCTTCTGTTCTTTGTGTGTGGTCACGCCAATGGAGCAAGGGATGTACAACAATACAAAAACGCATATGGAGCTGCCAAAAACATGAAGGAAGTGGAGGATTCTTCGTATGGGCCTTACATAACTCAGTACAATTCTGGACACAACTCAAGGGAAGCAGAAGTGTCATACCCAACTAGTTATGGAACCAAAGAAGGCAGAAGAGAAGCGGAGACTCCTTACATAACTCAATACAATTCAGGGCATATCTCAAAGGAAGCAGAAGTGACATACATAACCAATTATGGAACCAAAGAAGACATAAAAGAAGCTGAGACGCCTTACATAACACAGTACAATTCAGGGCACAACTCAAAGGAAGCAGAAGTGACATACATAACCAATTATGGAACCAAAGAAGACACAAAAGAAACTGAGACACCTTACAAAATGAGTTATGAAACCAAAAAAGGCACAAAAGAAATTGAGACACCTTATGTAATGAGTTATGGAACCAAAGAAATTGAAACACCTTACATAACTGGGTATATTTCTGCACAAGGCAAAAAGGAGTCAGAAGAAGTTGAAATGCCTTACATAACCGGGTACATCTCTGCACAAGGCAAAAAGGAGTCAAAAGAAGTCGAAGTTTCGCCTTACATAACCGGGTACATCTCTGCACAGGGCAAAAAGGAGTCAAAAGAAGTCGAAGTTTCGCCTTACATAACCGGGTATATTTCTGCACAAGGCAACAAGGAGTCAAAAGAAATTGAAACGCCTTACATAACCGGATACATTTCTGCACAAGCTGCAAAGGAAAAGACTGGGACCAAGTGTAAACATCACAAGCATGTAAATCCACCTTCCTCCGACACCAAAAATTCACAAGAGCCGCCATTGAAGGGACATGAACATCATCATATGCATACGCATTCATCATCTCCCATGGATCACAATGAAGCATTCAAGATAGGCTTTTTCACGTTCGATGATCTATACAAAGGTAAGATAATGCCTCTAAACTTTCCCAAACAAGAACATTCTCGTTTCTTGCCTAAAGAAGTAGCTGATTCCATTCCATTCGCAATGCAACAACTCCCACACCTTCTTCAACTTTTCTCAATCCCACAAGGTTCTCTAGATGCAAAACACATGGCATATGCACTCGAAGAATGTGAGATGAAACCCATCACAGGGGAGACCAAGTTTTGTGCCACTTCTCTAGAGTCGATGATAGAATTTGTTACCAAGATCATTGGTTCTGGTGTTAGCTTCAACATTCTCTCAACCACACACCCCACAACATCAACTGCCATCACACAAAGCTACACCATTTTGGAAGAACCCAATGAAGTTTTAGCTTCCAAAATGGTTTTTTGCCACCCAATGGCTTATCCTTATGCGGTTTTCTTCTGCCACAACTTTGAGAGAGACACCAAGTTCTTCAAAGTTTCACTTGAAGGTGCGAATGGAGATAAGGTGGAAGCTATGGCTGTTTGCCACATGGACACATCTGATTGGGACCCTAACCACAGTTTGTTTGGCCTGCTGGGAATCAAAGCTGGTGCCTCTTCTCCTGTGTGTCATTTCTTACCTGAAAATCATCTTGCTTGGATCCCATCACCAACTAAAGCTACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

549

Amino Acids

61.49

Weight (kDa)

5.9

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08480
malus_domestica	MD05G1066100.v1.1 MD05G1068100.v1.1
prunus_persica	Prupe.8G100000_v2.0.a1 Prupe.8G100000_v2.0.a1
pyrus_communis	pycom05g05950
rosa_chinensis	RchiOBHm_Chr6g0263821 RchiOBHm_Chr6g0263861
rosa_laevigata	RLG00000014309 RLG00000014310
rosa_multiflora	Rmu_sc0005300.1_g000001 Rmu_sc0005300.1_g000008
rosa_roxburghii	Rroxscaffold_7G00203850 Rroxscaffold_7G00203870
rosa_rugosa	Rorug06G0006500 Rorug06G0006500
rosa_samantha	Rh6AG126000 Rh6AG126200 Rh6BG122300 Rh6BG122500 Rh6CG120800 Rh6CG120900 Rh6DG108500 Rh6DG108600
rosa_wichuraiana	Rw6G010960 Rw6G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1568
AccB7I	CCANNNNNTGG	1 cut(s)	1390
AciI	CCGC	3 cut(s)	233, 896, 1406
AclWI	GGATC	3 cut(s)	960, 1612, 1625
AcsI	RAATTY	2 cut(s)	883, 1241
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	5 cut(s)	72, 155, 359, 611, 674
AfiI	CCNNNNNNNGG	4 cut(s)	905, 1196, 1197, 1390
AgsI	TTSAA	9 cut(s)	530, 590, 776, 904, 970, 1115, 1279, 1450, 1463
AhlI	ACTAGT	1 cut(s)	200
Alw26I	GTCTC	6 cut(s)	230, 332, 434, 485, 1196, 1428
AlwI	GGATC	3 cut(s)	960, 1612, 1625
AoxI	GGCC	2 cut(s)	137, 1546
ApeKI	GCWGC	2 cut(s)	98, 812
ApoI	RAATTY	2 cut(s)	883, 1241
AspS9I	GGNCC	3 cut(s)	137, 831, 1525
AsuC2I	CCSGG	3 cut(s)	607, 670, 733
AsuHPI	GGTGA	1 cut(s)	1617
AvaII	GGWCC	2 cut(s)	831, 1525
BaeGI	GKGCMC	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	1617
BanI	GGYRCC	1 cut(s)	1568
BbsI	GAAGAC	3 cut(s)	20, 327, 429
BbvI	GCAGC	2 cut(s)	85, 799
BccI	CCATC	3 cut(s)	1199, 1325, 1630
BciVI	GTATCC	1 cut(s)	788
BcnI	CCSGG	3 cut(s)	607, 670, 733
BcoDI	GTCTC	6 cut(s)	230, 332, 434, 485, 1196, 1428
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	4 cut(s)	9, 201, 1142, 1226
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	3 cut(s)	99, 813, 896
BlsI	GCNGC	3 cut(s)	100, 814, 897
Bme1390I	CCNGG	3 cut(s)	607, 670, 733
Bme18I	GGWCC	2 cut(s)	831, 1525
BmgT120I	GGNCC	3 cut(s)	137, 831, 1525
BmiI	GGNNCC	9 cut(s)	211, 313, 415, 517, 832, 1526, 1527, 1570, 1619
BmrFI	CCNGG	3 cut(s)	607, 670, 733
BmrI	ACTGGG	2 cut(s)	555, 837
BmsI	GCATC	2 cut(s)	14, 1135
BmuI	ACTGGG	2 cut(s)	555, 837
BpiI	GAAGAC	3 cut(s)	20, 327, 429
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	3 cut(s)	607, 670, 733
BsaHI	GRCGYC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	1 cut(s)	948
BsaWI	WCCGGW	1 cut(s)	791
BsaXI	ACNNNNNCTCC	4 cut(s)	1193, 1223, 1467, 1497
Bsc4I	CCNNNNNNNGG	4 cut(s)	905, 1196, 1197, 1390
Bse1I	ACTGG	2 cut(s)	550, 832
Bse3DI	GCAATG	1 cut(s)	1095
BseDI	CCNNGG	1 cut(s)	948
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	905, 1196, 1197, 1390
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	3 cut(s)	164, 327, 429
BseNI	ACTGG	2 cut(s)	550, 832
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	85, 799
BseYI	CCCAGC	1 cut(s)	1552
BsgI	GTGCAG	5 cut(s)	543, 603, 666, 729, 789
BshFI	GGCC	2 cut(s)	139, 1548
BshNI	GGYRCC	1 cut(s)	1568
BsiSI	CCGG	4 cut(s)	606, 669, 732, 792
BslFI	GGGAC	3 cut(s)	844, 921, 1538
BslI	CCNNNNNNNGG	4 cut(s)	905, 1196, 1197, 1390
BsmAI	GTCTC	6 cut(s)	230, 332, 434, 485, 1196, 1428
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	3 cut(s)	844, 921, 1538
BsmI	GAATGC	2 cut(s)	934, 965
BsnI	GGCC	2 cut(s)	139, 1548
Bso31I	GGTCTC	1 cut(s)	1196
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	952, 994, 1254, 1617
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	3 cut(s)	233, 896, 1406
BspANI	GGCC	2 cut(s)	139, 1548
BspCNI	CTCAG	3 cut(s)	163, 328, 430
BspLI	GGNNCC	9 cut(s)	211, 313, 415, 517, 832, 1526, 1527, 1570, 1619
BspPI	GGATC	3 cut(s)	960, 1612, 1625
BspT107I	GGYRCC	1 cut(s)	1568
BspTNI	GGTCTC	1 cut(s)	1196
BsrDI	GCAATG	1 cut(s)	1095
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	550, 832
BssECI	CCNNGG	1 cut(s)	948
BssMI	GATC	4 cut(s)	952, 994, 1254, 1617
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	948
Bst4CI	ACNGT	2 cut(s)	357, 1538
Bst6I	CTCTTC	2 cut(s)	220, 1579
BstACI	GRCGYC	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	1550
BstDEI	CTNAG	3 cut(s)	150, 336, 438
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	955, 997, 1257, 1620
BstMAI	GTCTC	6 cut(s)	230, 332, 434, 485, 1196, 1428
BstMBI	GATC	4 cut(s)	952, 994, 1254, 1617
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 95, 812
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	3 cut(s)	605, 668, 731
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	85, 799
BstV2I	GAAGAC	3 cut(s)	20, 327, 429
BstX2I	RGATCY	1 cut(s)	1617
BstYI	RGATCY	1 cut(s)	1617
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	2 cut(s)	139, 1548
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	1550
Cfr13I	GGNCC	3 cut(s)	137, 831, 1525
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	5 cut(s)	71, 154, 358, 610, 673
CviAII	CATG	6 cut(s)	109, 854, 911, 949, 1156, 1507
CviQI	GTAC	5 cut(s)	71, 154, 358, 610, 673
DdeI	CTNAG	3 cut(s)	150, 336, 438
DpnI	GATC	4 cut(s)	954, 996, 1256, 1619
DpnII	GATC	4 cut(s)	952, 994, 1254, 1617
Eam1104I	CTCTTC	2 cut(s)	220, 1579
EarI	CTCTTC	2 cut(s)	220, 1579
Eco130I	CCWWGG	1 cut(s)	948
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	2 cut(s)	831, 1525
EcoO109I	RGGNCCY	1 cut(s)	1525
EcoT14I	CCWWGG	1 cut(s)	948
EcoT22I	ATGCAT	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	948
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	6 cut(s)	112, 857, 914, 952, 1159, 1510
FalI	AAGNNNNNCTT	4 cut(s)	962, 994, 1443, 1475
FaqI	GGGAC	3 cut(s)	844, 921, 1538
FatI	CATG	6 cut(s)	108, 853, 910, 948, 1155, 1506
FauNDI	CATATG	3 cut(s)	91, 924, 1162
Fnu4HI	GCNGC	3 cut(s)	99, 813, 896
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	99, 813, 896
FspBI	CTAG	4 cut(s)	9, 201, 1142, 1226
GluI	GCNGC	3 cut(s)	99, 813, 896
GsaI	CCCAGC	1 cut(s)	1556
HaeIII	GGCC	2 cut(s)	139, 1548
HapII	CCGG	4 cut(s)	606, 669, 732, 792
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	112, 857, 914, 952, 1159, 1510
HpaII	CCGG	4 cut(s)	606, 669, 732, 792
HphI	GGTGA	1 cut(s)	1617
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	3 cut(s)	580, 874, 1519
Hpy188III	TCNNGA	5 cut(s)	9, 162, 970, 1142, 1226
Hpy8I	GTNNAC	1 cut(s)	842
HpyAV	CCTTC	6 cut(s)	106, 212, 876, 898, 1118, 1457
HpyCH4III	ACNGT	2 cut(s)	357, 1538
HpyCH4IV	ACGT	1 cut(s)	986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 95, 812
HpyF3I	CTNAG	3 cut(s)	150, 336, 438
HpySE526I	ACGT	1 cut(s)	986
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	6 cut(s)	112, 857, 914, 952, 1159, 1510
KflI	GGGWCCC	1 cut(s)	1525
Kzo9I	GATC	4 cut(s)	952, 994, 1254, 1617
LmnI	GCTCC	2 cut(s)	59, 95
Lsp1109I	GCAGC	2 cut(s)	85, 799
LweI	GCATC	2 cut(s)	14, 1135
MaeI	CTAG	4 cut(s)	9, 201, 1142, 1226
MaeII	ACGT	1 cut(s)	986
MaeIII	GTNAC	4 cut(s)	47, 289, 391, 1246
MalI	GATC	4 cut(s)	954, 996, 1256, 1619
MboI	GATC	4 cut(s)	952, 994, 1254, 1617
MflI	RGATCY	1 cut(s)	1617
MhlI	GDGCHC	1 cut(s)	372
MlyI	GAGTC	6 cut(s)	232, 584, 644, 707, 770, 1238
MmeI	TCCRAC	1 cut(s)	897
MnlI	CCTC	4 cut(s)	115, 880, 1029, 1582
Mph1103I	ATGCAT	1 cut(s)	930
MslI	CAYNNNNRTG	2 cut(s)	54, 852
MspI	CCGG	4 cut(s)	606, 669, 732, 792
MspR9I	CCNGG	3 cut(s)	607, 670, 733
Mva1269I	GAATGC	2 cut(s)	934, 965
MwoI	GCNNNNNNNGC	3 cut(s)	59, 95, 812
NciI	CCSGG	3 cut(s)	607, 670, 733
NcoI	CCATGG	1 cut(s)	948
NdeI	CATATG	3 cut(s)	91, 924, 1162
NdeII	GATC	4 cut(s)	952, 994, 1254, 1617
NlaIII	CATG	6 cut(s)	112, 857, 914, 952, 1159, 1510
NlaIV	GGNNCC	9 cut(s)	211, 313, 415, 517, 832, 1526, 1527, 1570, 1619
NmuCI	GTSAC	3 cut(s)	47, 289, 391
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	1 cut(s)	857
PctI	GAATGC	2 cut(s)	934, 965
PfeI	GAWTC	4 cut(s)	12, 125, 1073, 1557
PflMI	CCANNNNNTGG	1 cut(s)	1390
PkrI	GCNGC	3 cut(s)	100, 814, 897
PleI	GAGTC	6 cut(s)	232, 583, 643, 706, 769, 1237
PpsI	GAGTC	6 cut(s)	232, 583, 643, 706, 769, 1237
PpuMI	RGGWCCY	1 cut(s)	1525
Psp5II	RGGWCCY	1 cut(s)	1525
PspFI	CCCAGC	1 cut(s)	1552
PspN4I	GGNNCC	9 cut(s)	211, 313, 415, 517, 832, 1526, 1527, 1570, 1619
PspPI	GGNCC	3 cut(s)	137, 831, 1525
PspPPI	RGGWCCY	1 cut(s)	1525
PsuI	RGATCY	1 cut(s)	1617
RsaI	GTAC	5 cut(s)	72, 155, 359, 611, 674
RsaNI	GTAC	5 cut(s)	71, 154, 358, 610, 673
RseI	CAYNNNNRTG	2 cut(s)	54, 852
SatI	GCNGC	3 cut(s)	99, 813, 896
Sau3AI	GATC	4 cut(s)	952, 994, 1254, 1617
Sau96I	GGNCC	3 cut(s)	137, 831, 1525
SchI	GAGTC	6 cut(s)	232, 584, 644, 707, 770, 1238
ScrFI	CCNGG	3 cut(s)	607, 670, 733
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	14, 1135
SinI	GGWCC	2 cut(s)	831, 1525
SmiMI	CAYNNNNRTG	2 cut(s)	54, 852
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	200
SsiI	CCGC	3 cut(s)	233, 896, 1406
SspMI	CTAG	4 cut(s)	9, 201, 1142, 1226
StyD4I	CCNGG	3 cut(s)	605, 668, 731
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	2 cut(s)	357, 1538
TaiI	ACGT	1 cut(s)	989
TaqI	TCGA	5 cut(s)	648, 711, 990, 1170, 1232
TatI	WGTACW	3 cut(s)	70, 153, 357
TauI	GCSGC	1 cut(s)	898
TfiI	GAWTC	4 cut(s)	12, 125, 1073, 1557
TseFI	GTSAC	3 cut(s)	47, 289, 391
TseI	GCWGC	2 cut(s)	98, 812
Tsp45I	GTSAC	3 cut(s)	47, 289, 391
TspDTI	ATGAA	8 cut(s)	4, 125, 477, 927, 927, 975, 1199, 1368
Van91I	CCANNNNNTGG	1 cut(s)	1390
VpaK11BI	GGWCC	2 cut(s)	831, 1525
XapI	RAATTY	2 cut(s)	883, 1241
XbaI	TCTAGA	3 cut(s)	8, 1141, 1225
XceI	RCATGY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1541
XspI	CTAG	4 cut(s)	9, 201, 1142, 1226
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.