Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005300.1

Orthogroup ID

OG0006913

Physical Location & Seq

Genomic Coordinates Forward (+)

7293 .. 9540

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

atgcgtccttatgccagtggagcatgggacgtaagcacaaaacaagtggagatcaatagcgagccctacgtcacaaattatggagccaggaaaattgtcaaagagttggaggtgagtgagccttatatggccaattatggtggcagaaaaattgtgaaagaggtggagataagtgtgccttacatgaccaactatggtgctagagaaagtgtgaaagaagtggagaaaagcgagccttacatgaccaattatggagctagaaaatttgtgggagaagtggaggtaagcgagccatacatgaccaactacggagctagagaaagtgtggaaacagtggaggtaagagagccttacatgaccaactatggagttagagaaagtgcagttgaggcaagcgagccttccatgaccaactatggagctagaaaaagtgtgaaagaagtggaggtaagagagccttacatgaccaactatggagctacagaaagtgtgaaagaaggtgagaaaccttacatgacgaactatggagctagaaaaagtgtgaaagaagtgaaggcaagagagccttacatgaccaactatggagctacagaaactgtgaaagaagctgaggagccttatatgaccaattatggaaataaagaggcatcttacattacccaatatggaaacaaagaagacataaaagaaacacaggcttcttacataacccagtacggagataaagaagctgaggctacttacataaatcagtacggaaacaaagaaactgaggcttcttacataacccagtatggcacacaaggaggagaaaacaaagtacagaagccagttccatccgcccatgagcagcatgatcatatgcatgcacattcatcatctcgcaatgaggcacacgagcaaggctttttcactttagttgatttccataaggggagtacaatgccactcaacttcccaaaccaagaccattctcctttcttgcctaagaaaacagctgattcccttccattctcaacatcacaactcccacaccttctccaactcttctcgatcccacgcgattctcgtgacgccaaacacatggcgtacacacttgatcaatgcgagcaaaaacccatcaagggtgagaccaagttttgtgctacttcgctagagtcaatgaataatttcgttcacaaaatcattggttctgggatcaaattcaatattctctccacgacccacccctcaacctcaacctccattacacagaagtacacgattctggaagaacctaaacaagtcatagcttccaaaatggtcttttgccatccggtcccttatccttacgctgttttcttttgccaccactttgagagcgacaccaggttcttccaggtctcactaggaggtgagaatggagataaggtggaagccgtagcggtttgccacatggacacttctgattgggattctaagctcagtctgttccgcaacttgggtatcaaagctagtgcctcctctccggtgtgccatttcttcccggaaaatcatcttgtttggattccattcccagcaacagctactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

524

Amino Acids

59.21

Weight (kDa)

5.82

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08480
malus_domestica	MD05G1066100.v1.1 MD05G1068100.v1.1
prunus_persica	Prupe.8G100000_v2.0.a1 Prupe.8G100000_v2.0.a1
pyrus_communis	pycom05g05950
rosa_chinensis	RchiOBHm_Chr6g0263821 RchiOBHm_Chr6g0263861
rosa_laevigata	RLG00000014309 RLG00000014310
rosa_multiflora	Rmu_sc0005300.1_g000001 Rmu_sc0005300.1_g000008
rosa_roxburghii	Rroxscaffold_7G00203850 Rroxscaffold_7G00203870
rosa_rugosa	Rorug06G0006500 Rorug06G0006500
rosa_samantha	Rh6AG126000 Rh6AG126200 Rh6BG122300 Rh6BG122500 Rh6CG120800 Rh6CG120900 Rh6DG108500 Rh6DG108600
rosa_wichuraiana	Rw6G010960 Rw6G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1062
AciI	CCGC	3 cut(s)	840, 1424, 1474
AclWI	GGATC	2 cut(s)	1048, 1205
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	263, 1202
AcyI	GRCGYC	1 cut(s)	1074
AfaI	GTAC	6 cut(s)	716, 755, 822, 940, 1091, 1259
AfiI	CCNNNNNNNGG	2 cut(s)	1124, 1480
AgsI	TTSAA	1 cut(s)	1207
AjnI	CCWGG	3 cut(s)	86, 1367, 1377
Alw26I	GTCTC	2 cut(s)	1124, 1387
AlwI	GGATC	2 cut(s)	1048, 1205
AlwNI	CAGNNNCTG	2 cut(s)	596, 1568
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	850
ApoI	RAATTY	2 cut(s)	263, 1202
Asp700I	GAANNNNTTC	1 cut(s)	1169
AspS9I	GGNCC	1 cut(s)	1318
AsuC2I	CCSGG	1 cut(s)	1526
AsuHPI	GGTGA	4 cut(s)	124, 512, 1139, 1406
AvaII	GGWCC	1 cut(s)	1318
BaeI	ACNNNNGTAYC	2 cut(s)	1468, 1501
BalI	TGGCCA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	2 cut(s)	896, 1068
BbsI	GAAGAC	1 cut(s)	684
BbvCI	CCTCAGC	2 cut(s)	609, 732
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	3 cut(s)	844, 1127, 1320
BceAI	ACGGC	1 cut(s)	1403
BciT130I	CCWGG	3 cut(s)	88, 1369, 1379
BclI	TGATCA	2 cut(s)	856, 1099
BcnI	CCSGG	1 cut(s)	1526
BcoDI	GTCTC	2 cut(s)	1124, 1387
BfaI	CTAG	8 cut(s)	201, 258, 315, 423, 531, 1154, 1388, 1494
BfmI	CTRYAG	2 cut(s)	480, 588
BisI	GCNGC	1 cut(s)	851
BlsI	GCNGC	1 cut(s)	852
Bme1390I	CCNGG	4 cut(s)	88, 1369, 1379, 1526
Bme18I	GGWCC	1 cut(s)	1318
BmgT120I	GGNCC	1 cut(s)	1318
BmiI	GGNNCC	3 cut(s)	85, 615, 1320
BmrFI	CCNGG	4 cut(s)	88, 1369, 1379, 1526
BmrI	ACTGGG	2 cut(s)	706, 784
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	2 cut(s)	706, 784
BpiI	GAAGAC	1 cut(s)	684
Bpu10I	CCTNAGC	2 cut(s)	609, 732
BpuMI	CCSGG	1 cut(s)	1526
BsaHI	GRCGYC	1 cut(s)	1074
BsaI	GGTCTC	2 cut(s)	1124, 1387
BsaWI	WCCGGW	2 cut(s)	1315, 1507
BsaXI	ACNNNNNCTCC	4 cut(s)	1023, 1053, 1395, 1425
Bsc4I	CCNNNNNNNGG	2 cut(s)	1124, 1480
Bse1I	ACTGG	4 cut(s)	15, 712, 790, 830
Bse3DI	GCAATG	1 cut(s)	892
BseBI	CCWGG	3 cut(s)	88, 1369, 1379
BseGI	GGATG	2 cut(s)	836, 1312
BseLI	CCNNNNNNNGG	2 cut(s)	1124, 1480
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	4 cut(s)	600, 723, 762, 1477
BseNI	ACTGG	4 cut(s)	15, 712, 790, 830
BseRI	GAGGAG	3 cut(s)	626, 822, 1492
BseXI	GCAGC	1 cut(s)	862
BseYI	CCCAGC	1 cut(s)	1555
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	1062
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	1316, 1508, 1526
BslFI	GGGAC	2 cut(s)	41, 1304
BslI	CCNNNNNNNGG	2 cut(s)	1124, 1480
BsmAI	GTCTC	2 cut(s)	1124, 1387
BsmFI	GGGAC	2 cut(s)	41, 1304
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	2 cut(s)	1124, 1387
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
BspACI	CCGC	3 cut(s)	840, 1424, 1474
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	4 cut(s)	601, 724, 763, 1476
BspFNI	CGCG	1 cut(s)	1062
BspLI	GGNNCC	3 cut(s)	85, 615, 1320
BspPI	GGATC	2 cut(s)	1048, 1205
BspTNI	GGTCTC	2 cut(s)	1124, 1387
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	4 cut(s)	15, 712, 790, 830
BssMI	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
BssNI	GRCGYC	1 cut(s)	1074
BssSI	CACGAG	2 cut(s)	896, 1068
Bst2BI	CACGAG	2 cut(s)	896, 1068
Bst2UI	CCWGG	3 cut(s)	88, 1369, 1379
Bst4CI	ACNGT	2 cut(s)	334, 598
Bst6I	CTCTTC	1 cut(s)	1052
BstACI	GRCGYC	1 cut(s)	1074
BstC8I	GCNNGC	7 cut(s)	62, 233, 290, 394, 398, 867, 1109
BstDEI	CTNAG	6 cut(s)	609, 732, 771, 987, 1458, 1463
BstF5I	GGATG	2 cut(s)	836, 1312
BstFNI	CGCG	1 cut(s)	1062
BstKTI	GATC	5 cut(s)	54, 859, 1056, 1102, 1200
BstMAI	GTCTC	2 cut(s)	1124, 1387
BstMBI	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 389
BstNI	CCWGG	3 cut(s)	88, 1369, 1379
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	4 cut(s)	86, 1367, 1377, 1524
BstSFI	CTRYAG	2 cut(s)	480, 588
BstUI	CGCG	1 cut(s)	1062
BstV1I	GCAGC	1 cut(s)	862
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	1084
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	836, 1312
BtsIMutI	CAGTG	2 cut(s)	22, 339
Cac8I	GCNNGC	7 cut(s)	62, 233, 290, 394, 398, 867, 1109
CaiI	CAGNNNCTG	2 cut(s)	596, 1568
Cfr13I	GGNCC	1 cut(s)	1318
CseI	GACGC	1 cut(s)	1082
CsiI	ACCWGGT	1 cut(s)	1367
Csp6I	GTAC	6 cut(s)	715, 754, 821, 939, 1090, 1258
CspCI	CAANNNNNGTGG	4 cut(s)	27, 62, 121, 156
CviQI	GTAC	6 cut(s)	715, 754, 821, 939, 1090, 1258
DdeI	CTNAG	6 cut(s)	609, 732, 771, 987, 1458, 1463
DpnI	GATC	5 cut(s)	53, 858, 1055, 1101, 1199
DpnII	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	1052
EarI	CTCTTC	1 cut(s)	1052
EciI	GGCGGA	1 cut(s)	829
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	2 cut(s)	1124, 1387
Eco47I	GGWCC	1 cut(s)	1318
EcoRII	CCWGG	3 cut(s)	86, 1367, 1377
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	41, 1304
FauNDI	CATATG	1 cut(s)	861
FbaI	TGATCA	2 cut(s)	856, 1099
Fnu4HI	GCNGC	1 cut(s)	851
FokI	GGATG	2 cut(s)	823, 1299
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	851
FspBI	CTAG	8 cut(s)	201, 258, 315, 423, 531, 1154, 1388, 1494
GluI	GCNGC	1 cut(s)	851
GsaI	CCCAGC	1 cut(s)	1559
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	3 cut(s)	1316, 1508, 1526
HgaI	GACGC	1 cut(s)	1082
Hin1I	GRCGYC	1 cut(s)	1074
HinfI	GANTC	6 cut(s)	1001, 1064, 1157, 1264, 1454, 1546
HpaII	CCGG	3 cut(s)	1316, 1508, 1526
HphI	GGTGA	4 cut(s)	124, 512, 1139, 1406
Hpy166II	GTNNAC	3 cut(s)	1092, 1177, 1260
Hpy188I	TCNGA	1 cut(s)	1447
Hpy188III	TCNNGA	3 cut(s)	1051, 1070, 1268
Hpy8I	GTNNAC	3 cut(s)	1092, 1177, 1260
HpyAV	CCTTC	5 cut(s)	411, 491, 547, 1016, 1046
HpyCH4III	ACNGT	2 cut(s)	334, 598
HpyCH4IV	ACGT	2 cut(s)	30, 69
HpyCH4V	TGCA	3 cut(s)	383, 865, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 389
HpyF3I	CTNAG	6 cut(s)	609, 732, 771, 987, 1458, 1463
HpySE526I	ACGT	2 cut(s)	30, 69
Hsp92I	GRCGYC	1 cut(s)	1074
Ksp22I	TGATCA	2 cut(s)	856, 1099
Kzo9I	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
LmnI	GCTCC	9 cut(s)	20, 83, 254, 311, 419, 476, 527, 584, 613
Lsp1109I	GCAGC	1 cut(s)	862
LweI	GCATC	1 cut(s)	656
MabI	ACCWGGT	1 cut(s)	1367
MaeI	CTAG	8 cut(s)	201, 258, 315, 423, 531, 1154, 1388, 1494
MaeII	ACGT	2 cut(s)	30, 69
MaeIII	GTNAC	2 cut(s)	70, 1070
MalI	GATC	5 cut(s)	53, 858, 1055, 1101, 1199
MboI	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
MboII	GAAGA	5 cut(s)	689, 1039, 1283, 1366, 1513
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	9 cut(s)	76, 93, 133, 150, 247, 263, 628, 1168, 1202
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	1166
MmeI	TCCRAC	2 cut(s)	87, 1066
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	867
MroXI	GAANNNNTTC	1 cut(s)	1169
MscI	TGGCCA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	864
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	3 cut(s)	1316, 1508, 1526
MspR9I	CCNGG	4 cut(s)	88, 1369, 1379, 1526
MvaI	CCWGG	3 cut(s)	88, 1369, 1379
MvnI	CGCG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	2 cut(s)	20, 389
NciI	CCSGG	1 cut(s)	1526
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
NlaIV	GGNNCC	3 cut(s)	85, 615, 1320
NmuCI	GTSAC	2 cut(s)	70, 1070
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	1 cut(s)	869
PaeI	GCATGC	1 cut(s)	869
PcsI	WCGNNNNNNNCGW	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	1169
PfeI	GAWTC	5 cut(s)	1001, 1064, 1264, 1454, 1546
PfoI	TCCNGGA	1 cut(s)	1524
PkrI	GCNGC	1 cut(s)	852
PleI	GAGTC	1 cut(s)	1165
PpsI	GAGTC	1 cut(s)	1165
Psp6I	CCWGG	3 cut(s)	86, 1367, 1377
PspFI	CCCAGC	1 cut(s)	1555
PspGI	CCWGG	3 cut(s)	86, 1367, 1377
PspN4I	GGNNCC	3 cut(s)	85, 615, 1320
PspPI	GGNCC	1 cut(s)	1318
PstNI	CAGNNNCTG	2 cut(s)	596, 1568
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	6 cut(s)	716, 755, 822, 940, 1091, 1259
RsaNI	GTAC	6 cut(s)	715, 754, 821, 939, 1090, 1258
RseI	CAYNNNNRTG	1 cut(s)	864
SatI	GCNGC	1 cut(s)	851
Sau3AI	GATC	5 cut(s)	51, 856, 1053, 1099, 1197
Sau96I	GGNCC	1 cut(s)	1318
SchI	GAGTC	1 cut(s)	1166
ScrFI	CCNGG	4 cut(s)	88, 1369, 1379, 1526
SduI	GDGCHC	1 cut(s)	66
SexAI	ACCWGGT	1 cut(s)	1367
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	2 cut(s)	480, 588
SinI	GGWCC	1 cut(s)	1318
SmiMI	CAYNNNNRTG	1 cut(s)	864
SphI	GCATGC	1 cut(s)	869
Sse9I	AATT	9 cut(s)	76, 93, 133, 150, 247, 263, 628, 1168, 1202
SsiI	CCGC	3 cut(s)	840, 1424, 1474
SspI	AATATT	1 cut(s)	1210
SspMI	CTAG	8 cut(s)	201, 258, 315, 423, 531, 1154, 1388, 1494
StyD4I	CCNGG	4 cut(s)	86, 1367, 1377, 1524
TaaI	ACNGT	2 cut(s)	334, 598
TaiI	ACGT	2 cut(s)	33, 72
TaqI	TCGA	1 cut(s)	1052
TasI	AATT	9 cut(s)	76, 93, 133, 150, 247, 263, 628, 1168, 1202
TatI	WGTACW	3 cut(s)	820, 938, 1257
TfiI	GAWTC	5 cut(s)	1001, 1064, 1264, 1454, 1546
TscAI	CASTG	2 cut(s)	22, 339
TseFI	GTSAC	2 cut(s)	70, 1070
TseI	GCWGC	1 cut(s)	850
Tsp45I	GTSAC	2 cut(s)	70, 1070
TspDTI	ATGAA	2 cut(s)	864, 1178
TspGWI	ACGGA	3 cut(s)	324, 732, 771
TspRI	CASTG	2 cut(s)	22, 339
VpaK11BI	GGWCC	1 cut(s)	1318
XapI	RAATTY	2 cut(s)	263, 1202
XceI	RCATGY	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	1169
XspI	CTAG	8 cut(s)	201, 258, 315, 423, 531, 1154, 1388, 1494
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.