MD05G1068100.v1.1

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006913
Physical Location & Seq
Forward (+)
13022635 .. 13025546
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1068100.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGCCTCTCGATTCATCATCTTTTGTCTTCTGTTTGTTTTGTGTCGTTATGCCACTGGAGCAAGGGATGTAGTTAAACAACAATACAAAATTGGGTATGGAGCTACAAAAAGCATGAAAGAAGTGGAGGACAGTCCTAATTACATAACAAATTGTGGAAACAAACAAGGCAGAAAAGGAATTGGAGCTACAAAAAGCATGAAAGAAGTGGAGGACCTTCCTAATTACATAACAAATTATGGAAACAAACAAGGCATAATAGGAAATGGAGCTACAAAAAGCATGAAAGAAGTGGAGGACCTTCCTAATTACATAACAAATTATGGAAACAAACAAGGCATAATAGGAAATGGAGCTACAAAAAGCATGAAAGAAGTGGAGGACCTTCCCAATTACATAACAAATTATGGAAACAAACAAGGTAGAAAGGGAATTGGAGCTACAAAAAGCATGAAAGAAGTGGAGGACATTCCCAATTACATAACAAATTATGGAGGCAGAAAAGGAGCTATGACTCCTTACACAATGAGTTATGCAACCAAAGAAGAAGTCGAGACTCCTTATACAATGAGTTACGCTACCAAAGAAGAAGTCCAGACTCCGTACACAATGAATTATGCAACTAAGGAAAGCAAAAAGGAAGTTAAAACTCCTTACACAATGAGTTATGCAGCCAAAGAAGAAGTCGAGACTCCTTACAAAATGAGTTATGGAACAGAAGAAGTTGAGCCTTCTCATGAGCATGTTCATATTCATATGCATCCACAATCTCAACCTCACATGGATCACAATGAAGCATCCAAGCAAGGATTTTTCACGTTCGATGATTTACACTGCGGTATGAGAATGCCTCTCCACTTTCCCAACCAAGAACATTCTCGTTTCCTGCCTAAAGAAGTAGCTGATTCCATCCCATTCTCAACACCACATATCCCACAAATTCGTCAACTCTTCTCAATCCCACAAGGTTCTCAAGAAGCGAAGAATGTCGCATATGCACTTGAACAATGTGAGATGAAACCCATCACGGGTGAGACGAAGTTTTGTGCCACTTCACTGGAGTCCATGACAAATTTTGTTACCAAGATCATCGGTTCAGGTGTTCGCTTCAACATTCTCTCAACCGAGCACCCCACAACATCAACATCCATCACACAAAGGTACACTATCTTAGAAGAACCTAAACAAGTTTTGGCTTCCAAAATGGTTTTTTGCCATCCATTGGCCTATCCTTATGCAGTGTTCTTCTGCCACCATTTTGAGAGAGACACCAAGTTCTTCAAGGTTAAACTTGGAGGTGAGAATGGTGATAAGGTTCAAGCTGTAGCTGTTTGCCACATGGACACTTCTGATTGGGACCCTGCCCACGACTTGTTTGCCCTTCTTGGAATTAAAGCTAGCGCTTCATCTCCAGTTTGCCATTTCTTGCCGGAAAATCATCTAGTTTGGATCCCATCACCTGCAACATCAGCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

493

Amino Acids

55.27

Weight (kDa)

6.83

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 271 - 484 1.4e-72 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1468
Acc36I ACCTGC 1 cut(s) 1468
AccB7I CCANNNNNTGG 1 cut(s) 1222
AciI CCGC 1 cut(s) 837
AclWI GGATC 3 cut(s) 792, 1444, 1457
AcsI RAATTY 2 cut(s) 939, 1072
AfaI GTAC 2 cut(s) 605, 1163
AfeI AGCGCT 1 cut(s) 1402
AfiI CCNNNNNNNGG 2 cut(s) 1028, 1222
AgsI TTSAA 4 cut(s) 1004, 1111, 1282, 1319
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 4 cut(s) 548, 683, 1028, 1260
AlwI GGATC 3 cut(s) 792, 1444, 1457
Aor51HI AGCGCT 1 cut(s) 1402
AoxI GGCC 2 cut(s) 3, 1224
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 2 cut(s) 939, 1072
ArsI GACNNNNNNTTYG 6 cut(s) 534, 566, 576, 608, 669, 701
AspLEI GCGC 1 cut(s) 1403
AspS9I GGNCC 4 cut(s) 214, 298, 382, 1357
AsuHPI GGTGA 4 cut(s) 1043, 1310, 1319, 1449
AsuNHI GCTAGC 1 cut(s) 1397
AvaII GGWCC 4 cut(s) 214, 298, 382, 1357
BamHI GGATCC 1 cut(s) 1449
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 1 cut(s) 683
BccI CCATC 5 cut(s) 917, 1031, 1157, 1224, 1462
BcgI CGANNNNNNTGC 2 cut(s) 1358, 1392
BcoDI GTCTC 4 cut(s) 548, 683, 1028, 1260
BfaI CTAG 2 cut(s) 1398, 1442
BfmI CTRYAG 1 cut(s) 1323
BfoI RGCGCY 1 cut(s) 1404
BfuAI ACCTGC 1 cut(s) 1468
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
Bme18I GGWCC 4 cut(s) 214, 298, 382, 1357
BmgT120I GGNCC 4 cut(s) 214, 298, 382, 1357
BmiI GGNNCC 3 cut(s) 1358, 1359, 1451
BmsI GCATC 2 cut(s) 769, 806
BmtI GCTAGC 1 cut(s) 1401
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 835, 867
BpmI CTGGAG 3 cut(s) 78, 1079, 1395
BpuEI CTTGAG 1 cut(s) 957
Bsc4I CCNNNNNNNGG 2 cut(s) 1028, 1222
Bse1I ACTGG 3 cut(s) 61, 1062, 1412
BseGI GGATG 6 cut(s) 73, 760, 797, 909, 1145, 1216
BseLI CCNNNNNNNGG 2 cut(s) 1028, 1222
BseNI ACTGG 3 cut(s) 61, 1062, 1412
BseXI GCAGC 1 cut(s) 683
BshFI GGCC 2 cut(s) 5, 1226
BsiHKAI GWGCWC 1 cut(s) 1131
BsiSI CCGG 1 cut(s) 1430
BslFI GGGAC 1 cut(s) 1370
BslI CCNNNNNNNGG 2 cut(s) 1028, 1222
BsmAI GTCTC 4 cut(s) 548, 683, 1028, 1260
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 1370
BsmI GAATGC 1 cut(s) 852
BsnI GGCC 2 cut(s) 5, 1226
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp143I GATC 3 cut(s) 784, 1086, 1449
BspACI CCGC 1 cut(s) 837
BspANI GGCC 2 cut(s) 5, 1226
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 1358, 1359, 1451
BspMI ACCTGC 1 cut(s) 1468
BspOI GCTAGC 1 cut(s) 1401
BspPI GGATC 3 cut(s) 792, 1444, 1457
BsrI ACTGG 3 cut(s) 61, 1062, 1412
BssMI GATC 3 cut(s) 784, 1086, 1449
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 956
BstC8I GCNNGC 1 cut(s) 1399
BstDEI CTNAG 2 cut(s) 624, 1171
BstF5I GGATG 6 cut(s) 73, 760, 797, 909, 1145, 1216
BstH2I RGCGCY 1 cut(s) 1404
BstHHI GCGC 1 cut(s) 1403
BstKTI GATC 3 cut(s) 787, 1089, 1452
BstMAI GTCTC 4 cut(s) 548, 683, 1028, 1260
BstMBI GATC 3 cut(s) 784, 1086, 1449
BstMWI GCNNNNNNNGC 2 cut(s) 59, 1469
BstNSI RCATGY 1 cut(s) 746
BstSFI CTRYAG 1 cut(s) 1323
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 1449
BstXI CCANNNNNNTGG 1 cut(s) 1057
BstYI RGATCY 1 cut(s) 1449
BsuRI GGCC 2 cut(s) 5, 1226
BtsCI GGATG 6 cut(s) 73, 760, 797, 909, 1145, 1216
BtsI GCAGTG 2 cut(s) 832, 1245
BtsIMutI CAGTG 4 cut(s) 54, 832, 1055, 1245
BveI ACCTGC 1 cut(s) 1468
Cac8I GCNNGC 1 cut(s) 1399
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 1403
Cfr13I GGNCC 4 cut(s) 214, 298, 382, 1357
Csp6I GTAC 2 cut(s) 604, 1162
CviQI GTAC 2 cut(s) 604, 1162
DdeI CTNAG 2 cut(s) 624, 1171
DpnI GATC 3 cut(s) 786, 1088, 1451
DpnII GATC 3 cut(s) 784, 1086, 1449
Eam1104I CTCTTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 956
Eco47I GGWCC 4 cut(s) 214, 298, 382, 1357
Eco47III AGCGCT 1 cut(s) 1402
EcoO109I RGGNCCY 4 cut(s) 214, 298, 382, 1357
EcoT22I ATGCAT 1 cut(s) 762
Esp3I CGTCTC 1 cut(s) 1028
FaqI GGGAC 1 cut(s) 1370
FauNDI CATATG 2 cut(s) 756, 994
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 6 cut(s) 80, 747, 784, 896, 1132, 1203
Fsp4HI GCNGC 1 cut(s) 672
FspBI CTAG 2 cut(s) 1398, 1442
GlaI GCGC 1 cut(s) 1402
GluI GCNGC 1 cut(s) 672
GsuI CTGGAG 3 cut(s) 78, 1079, 1395
HaeII RGCGCY 1 cut(s) 1404
HaeIII GGCC 2 cut(s) 5, 1226
HapII CCGG 1 cut(s) 1430
HhaI GCGC 1 cut(s) 1403
Hin6I GCGC 1 cut(s) 1401
HinP1I GCGC 1 cut(s) 1401
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HinfI GANTC 7 cut(s) 12, 514, 556, 598, 691, 905, 1061
HpaII CCGG 1 cut(s) 1430
HphI GGTGA 4 cut(s) 1043, 1310, 1319, 1449
Hpy166II GTNNAC 3 cut(s) 606, 947, 1164
Hpy188I TCNGA 2 cut(s) 1351, 1478
Hpy188III TCNNGA 6 cut(s) 9, 553, 595, 688, 737, 974
Hpy8I GTNNAC 3 cut(s) 606, 947, 1164
HpyAV CCTTC 5 cut(s) 227, 311, 395, 741, 1391
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 7 cut(s) 536, 620, 671, 760, 998, 1238, 1463
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 1469
HpyF3I CTNAG 2 cut(s) 624, 1171
HpySE526I ACGT 1 cut(s) 818
HspAI GCGC 1 cut(s) 1401
KflI GGGWCCC 1 cut(s) 1357
Kzo9I GATC 3 cut(s) 784, 1086, 1449
LmnI GCTCC 7 cut(s) 59, 101, 185, 269, 353, 437, 506
LpnPI CCDG 9 cut(s) 42, 608, 899, 1043, 1083, 1374, 1425, 1443, 1473
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 2 cut(s) 769, 806
MaeI CTAG 2 cut(s) 1398, 1442
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 2 cut(s) 572, 1078
MalI GATC 3 cut(s) 786, 1088, 1451
MboI GATC 3 cut(s) 784, 1086, 1449
MflI RGATCY 1 cut(s) 1449
MhlI GDGCHC 1 cut(s) 1131
MlyI GAGTC 5 cut(s) 508, 550, 592, 685, 1070
Mph1103I ATGCAT 1 cut(s) 762
MseI TTAA 4 cut(s) 75, 645, 1287, 1392
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 1 cut(s) 1430
Mva1269I GAATGC 1 cut(s) 852
MwoI GCNNNNNNNGC 2 cut(s) 59, 1469
NdeI CATATG 2 cut(s) 756, 994
NdeII GATC 3 cut(s) 784, 1086, 1449
NheI GCTAGC 1 cut(s) 1397
NlaIV GGNNCC 3 cut(s) 1358, 1359, 1451
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 1 cut(s) 746
PagI TCATGA 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 1468
PcsI WCGNNNNNNNCGW 1 cut(s) 1034
PctI GAATGC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 12, 905
PflMI CCANNNNNTGG 1 cut(s) 1222
PkrI GCNGC 1 cut(s) 673
PleI GAGTC 5 cut(s) 508, 550, 592, 685, 1069
PpsI GAGTC 5 cut(s) 508, 550, 592, 685, 1069
PpuMI RGGWCCY 4 cut(s) 214, 298, 382, 1357
Psp5II RGGWCCY 4 cut(s) 214, 298, 382, 1357
PspN4I GGNNCC 3 cut(s) 1358, 1359, 1451
PspPI GGNCC 4 cut(s) 214, 298, 382, 1357
PspPPI RGGWCCY 4 cut(s) 214, 298, 382, 1357
PsuI RGATCY 1 cut(s) 1449
RsaI GTAC 2 cut(s) 605, 1163
RsaNI GTAC 2 cut(s) 604, 1162
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 4 cut(s) 75, 645, 1287, 1392
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 3 cut(s) 784, 1086, 1449
Sau96I GGNCC 4 cut(s) 214, 298, 382, 1357
SchI GAGTC 5 cut(s) 508, 550, 592, 685, 1070
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 2 cut(s) 769, 806
SfcI CTRYAG 1 cut(s) 1323
SinI GGWCC 4 cut(s) 214, 298, 382, 1357
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 972
SmoI CTYRAG 1 cut(s) 972
SsiI CCGC 1 cut(s) 837
SspMI CTAG 2 cut(s) 1398, 1442
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 821
TaqI TCGA 4 cut(s) 10, 552, 687, 822
TfiI GAWTC 2 cut(s) 12, 905
Tru1I TTAA 4 cut(s) 75, 645, 1287, 1392
Tru9I TTAA 4 cut(s) 75, 645, 1287, 1392
TscAI CASTG 4 cut(s) 61, 839, 1062, 1245
TseI GCWGC 1 cut(s) 671
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 4 cut(s) 61, 839, 1062, 1245
Van91I CCANNNNNTGG 1 cut(s) 1222
VpaK11BI GGWCC 4 cut(s) 214, 298, 382, 1357
XapI RAATTY 2 cut(s) 939, 1072
XceI RCATGY 1 cut(s) 746
XspI CTAG 2 cut(s) 1398, 1442
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.