Rh6DG108600

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006913
Physical Location & Seq
Reverse (-)
14140810 .. 14170809
30000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG108600.1

Sequence Viewer

Length: 1896 bp
ATGACCCTGAAGGTAGACTCTTCCACCGCAATCGTGCACCCGAACGGCTGGATATGGCAGCCCCTCTGGATTTTGGACAGGGAAAAGGTCAGACACAAAAAGACCCAAACCTTAACCCAATCCAATGCATCAGATCTAGAAGGCCCTAGCCCAATAAAAAATCCTAGCACCCTAGCAAACCATTCGCTGCCACTATCATCAATACTTGCGACACCTTCCCTTGCTAGCAACCACCGCCACCGTCACAGTCTCCCGGGATTGGTCACTAAACAAACCACCAACCAAGAAAGAAGTTGCAAGAAAAAGTCCCTCCCCACCAATTGTGACAATGACAGAGCCACCATCAATAGCAAACTCAGTACAAGCAATCCAATCCTTCAATGTTGTCCTTATGCCAGTGGAGCATGGGACGTAAGCACAAAACAAGTGGAGATCAATAGCGAGCCCTACGTCACAAATTATGGAGCCAGGAAAATTGTCAAAGAGTTGGAGGTGAGTGAGCCTTATATGGCCAATTATGGTGGCAGAAAAATTGTGAAAGAGGTGATAAGTGTGCCTTACATGACCAACTATGGTGCTAGAGAAAGTGTGAAAGAAGTGGAGAAAAGCGAGCCTTACATGACCAATTATGGAGCTAGAAAAATTGTGAAAGAAGTGGAGGTAAGCGAGCCATACATGACCAACTACGGAGCTAGAGAAAGTGTGGAAGCAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGTTAGAGAAAGTGCAGTTGAGGAAAGCGAGCCTTCCATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGAAACCTTACATGACGAACTATGGAGCAAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGGAGCCTTACATGACCAATTATGGAAATAAAGAGGCTTCTTACATTACCCAATATGGAAACAAAGAAGACATAAAAGAAACAGAGGCTTCTTACATAACCCAGTACGGAGACAAAGAAGCCGAGACTACTTACATAAATCAGAACGGAAACAAAGAAACTGAGGCTTCTTACATAACCCAGTATGGCACACAAGGAGGAGAAAACAAGGTACAGAAGCCAGTTCCATCCGCCCATGAGCACCATGATCATATGCATGCACATTCATCATCTCGCAATGAGGCACACGAGCAAGGCTTTTTCACTTTGGTTGATTTCCATAAGGGGAGTACAATGCCACTCAACTTCCCAAACCAAGACCATTCTCCTTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACGCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGTGCTACTTCACTAGAATCAATGAATGATTTCGTTCACAAAATCATTGGTTCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCACTTTGAGAGCGACACCAGGTTCTTCCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

631

Amino Acids

70.88

Weight (kDa)

6.35

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 410 - 623 4e-72 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 1383
AciI CCGC 5 cut(s) 27, 235, 1161, 1745, 1795
AclWI GGATC 2 cut(s) 1369, 1526
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 1523
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 1395
AfaI GTAC 6 cut(s) 361, 1037, 1143, 1261, 1412, 1580
AfiI CCNNNNNNNGG 3 cut(s) 259, 1445, 1801
AgsI TTSAA 2 cut(s) 380, 1528
AjnI CCWGG 3 cut(s) 467, 1688, 1698
Alw21I GWGCWC 2 cut(s) 39, 1173
Alw26I GTCTC 5 cut(s) 254, 1035, 1049, 1445, 1708
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 2 cut(s) 1369, 1526
AlwNI CAGNNNCTG 1 cut(s) 1889
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 142, 510
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 58, 187
ApoI RAATTY 1 cut(s) 1523
Asp700I GAANNNNTTC 1 cut(s) 1490
AspS9I GGNCC 2 cut(s) 143, 1639
AsuC2I CCSGG 3 cut(s) 254, 255, 1847
AsuHPI GGTGA 4 cut(s) 505, 556, 1460, 1727
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 1639
BaeGI GKGCMC 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 1789, 1822
BalI TGGCCA 1 cut(s) 512
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 2 cut(s) 1217, 1389
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 39, 1173
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 2 cut(s) 70, 174
BccI CCATC 4 cut(s) 350, 1165, 1448, 1641
BceAI ACGGC 2 cut(s) 61, 1724
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 3 cut(s) 469, 1690, 1700
BclI TGATCA 2 cut(s) 1177, 1420
BcnI CCSGG 3 cut(s) 254, 255, 1847
BcoDI GTCTC 5 cut(s) 254, 1035, 1049, 1445, 1708
BfmI CTRYAG 2 cut(s) 801, 909
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 59, 188
BlsI GCNGC 2 cut(s) 60, 189
Bme1390I CCNGG 6 cut(s) 254, 255, 469, 1690, 1700, 1847
Bme18I GGWCC 1 cut(s) 1639
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 143, 1639
BmiI GGNNCC 3 cut(s) 466, 936, 1641
BmrFI CCNGG 6 cut(s) 254, 255, 469, 1690, 1700, 1847
BmrI ACTGGG 2 cut(s) 1027, 1105
BmsI GCATC 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 228
BmuI ACTGGG 2 cut(s) 1027, 1105
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 930
BpuMI CCSGG 3 cut(s) 254, 255, 1847
BsaHI GRCGYC 1 cut(s) 1395
BsaI GGTCTC 2 cut(s) 1445, 1708
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 2 cut(s) 1636, 1828
BsaXI ACNNNNNCTCC 4 cut(s) 1344, 1374, 1716, 1746
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 1445, 1801
Bse1I ACTGG 4 cut(s) 396, 1033, 1111, 1151
Bse3DI GCAATG 1 cut(s) 1213
BseBI CCWGG 3 cut(s) 469, 1690, 1700
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 1157, 1633
BseLI CCNNNNNNNGG 3 cut(s) 259, 1445, 1801
BseMI GCAATG 1 cut(s) 1213
BseMII CTCAG 5 cut(s) 370, 813, 921, 1083, 1798
BseNI ACTGG 4 cut(s) 396, 1033, 1111, 1151
BseRI GAGGAG 3 cut(s) 947, 1143, 1813
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 70, 174
BseYI CCCAGC 1 cut(s) 1876
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 1383
BshFI GGCC 2 cut(s) 144, 512
BsiHKAI GWGCWC 2 cut(s) 39, 1173
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 4 cut(s) 254, 1637, 1829, 1847
BslFI GGGAC 3 cut(s) 292, 422, 1625
BslI CCNNNNNNNGG 3 cut(s) 259, 1445, 1801
BsmAI GTCTC 5 cut(s) 254, 1035, 1049, 1445, 1708
BsmFI GGGAC 3 cut(s) 292, 422, 1625
BsnI GGCC 2 cut(s) 144, 512
Bso31I GGTCTC 2 cut(s) 1445, 1708
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 3 cut(s) 39, 447, 1173
Bsp143I GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
BspACI CCGC 5 cut(s) 27, 235, 1161, 1745, 1795
BspANI GGCC 2 cut(s) 144, 512
BspCNI CTCAG 5 cut(s) 369, 814, 922, 1084, 1797
BspFNI CGCG 1 cut(s) 1383
BspLI GGNNCC 3 cut(s) 466, 936, 1641
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 2 cut(s) 1369, 1526
BspTNI GGTCTC 2 cut(s) 1445, 1708
BsrDI GCAATG 1 cut(s) 1213
BsrI ACTGG 4 cut(s) 396, 1033, 1111, 1151
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
BssNI GRCGYC 1 cut(s) 1395
BssSI CACGAG 2 cut(s) 1217, 1389
Bst2BI CACGAG 2 cut(s) 1217, 1389
Bst2UI CCWGG 3 cut(s) 469, 1690, 1700
Bst4CI ACNGT 2 cut(s) 242, 248
Bst6I CTCTTC 2 cut(s) 25, 1373
BstACI GRCGYC 1 cut(s) 1395
BstC8I GCNNGC 7 cut(s) 226, 443, 611, 668, 776, 1188, 1430
BstDEI CTNAG 7 cut(s) 356, 822, 930, 1092, 1308, 1779, 1784
BstF5I GGATG 2 cut(s) 1157, 1633
BstFNI CGCG 1 cut(s) 1383
BstKTI GATC 6 cut(s) 136, 435, 1180, 1377, 1423, 1521
BstMAI GTCTC 5 cut(s) 254, 1035, 1049, 1445, 1708
BstMBI GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
BstMWI GCNNNNNNNGC 2 cut(s) 234, 401
BstNI CCWGG 3 cut(s) 469, 1690, 1700
BstNSI RCATGY 1 cut(s) 1190
BstSCI CCNGG 6 cut(s) 252, 253, 467, 1688, 1698, 1845
BstSFI CTRYAG 2 cut(s) 801, 909
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 1383
BstV1I GCAGC 2 cut(s) 70, 174
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 1405
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 144, 512
BtsCI GGATG 2 cut(s) 1157, 1633
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 403, 717
Cac8I GCNNGC 7 cut(s) 226, 443, 611, 668, 776, 1188, 1430
CaiI CAGNNNCTG 1 cut(s) 1889
Cfr13I GGNCC 2 cut(s) 143, 1639
Cfr9I CCCGGG 1 cut(s) 253
CseI GACGC 1 cut(s) 1403
CsiI ACCWGGT 1 cut(s) 1688
Csp6I GTAC 6 cut(s) 360, 1036, 1142, 1260, 1411, 1579
CspCI CAANNNNNGTGG 4 cut(s) 408, 443, 502, 537
CviQI GTAC 6 cut(s) 360, 1036, 1142, 1260, 1411, 1579
DdeI CTNAG 7 cut(s) 356, 822, 930, 1092, 1308, 1779, 1784
DpnI GATC 6 cut(s) 135, 434, 1179, 1376, 1422, 1520
DpnII GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 25, 1373
EarI CTCTTC 2 cut(s) 25, 1373
EciI GGCGGA 1 cut(s) 1150
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 2 cut(s) 1445, 1708
Eco47I GGWCC 1 cut(s) 1639
Eco57I CTGAAG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 3 cut(s) 467, 1688, 1698
EcoT22I ATGCAT 2 cut(s) 130, 1188
EcoT38I GRGCYC 1 cut(s) 447
FaqI GGGAC 3 cut(s) 292, 422, 1625
FauNDI CATATG 1 cut(s) 1182
FbaI TGATCA 2 cut(s) 1177, 1420
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 59, 188
FokI GGATG 2 cut(s) 1144, 1620
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 59, 188
GluI GCNGC 2 cut(s) 59, 188
GsaI CCCAGC 1 cut(s) 1880
HaeIII GGCC 2 cut(s) 144, 512
HapII CCGG 4 cut(s) 254, 1637, 1829, 1847
HgaI GACGC 1 cut(s) 1403
Hin1I GRCGYC 1 cut(s) 1395
HinfI GANTC 7 cut(s) 17, 1322, 1385, 1478, 1585, 1775, 1867
HpaII CCGG 4 cut(s) 254, 1637, 1829, 1847
HphI GGTGA 4 cut(s) 505, 556, 1460, 1727
Hpy166II GTNNAC 5 cut(s) 16, 37, 1413, 1498, 1581
Hpy188I TCNGA 4 cut(s) 92, 133, 1074, 1768
Hpy188III TCNNGA 5 cut(s) 67, 137, 1372, 1391, 1589
Hpy8I GTNNAC 5 cut(s) 16, 37, 1413, 1498, 1581
HpyAV CCTTC 8 cut(s) 4, 134, 225, 386, 789, 868, 1337, 1367
HpyCH4III ACNGT 2 cut(s) 242, 248
HpyCH4IV ACGT 2 cut(s) 411, 450
HpyCH4V TGCA 6 cut(s) 37, 128, 297, 761, 1186, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 401
HpyF3I CTNAG 7 cut(s) 356, 822, 930, 1092, 1308, 1779, 1784
HpySE526I ACGT 2 cut(s) 411, 450
Hsp92I GRCGYC 1 cut(s) 1395
Ksp22I TGATCA 2 cut(s) 1177, 1420
Kzo9I GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
LmnI GCTCC 8 cut(s) 401, 464, 632, 689, 797, 848, 905, 934
Lsp1109I GCAGC 2 cut(s) 70, 174
LweI GCATC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 1688
MaeII ACGT 2 cut(s) 411, 450
MaeIII GTNAC 5 cut(s) 242, 262, 323, 451, 1391
MalI GATC 6 cut(s) 135, 434, 1179, 1376, 1422, 1520
MboI GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
MboII GAAGA 6 cut(s) 12, 1010, 1360, 1604, 1687, 1834
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 39, 447, 1173
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 9 cut(s) 319, 457, 474, 514, 531, 625, 642, 949, 1523
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 2 cut(s) 468, 1387
Mox20I TGGCCA 1 cut(s) 512
Mph1103I ATGCAT 2 cut(s) 130, 1188
MroXI GAANNNNTTC 1 cut(s) 1490
MscI TGGCCA 1 cut(s) 512
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 1185
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 4 cut(s) 254, 1637, 1829, 1847
MspR9I CCNGG 6 cut(s) 254, 255, 469, 1690, 1700, 1847
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 3 cut(s) 469, 1690, 1700
MvnI CGCG 1 cut(s) 1383
MwoI GCNNNNNNNGC 2 cut(s) 234, 401
NciI CCSGG 3 cut(s) 254, 255, 1847
NdeI CATATG 1 cut(s) 1182
NdeII GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
NheI GCTAGC 1 cut(s) 224
NlaIV GGNNCC 3 cut(s) 466, 936, 1641
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 5 cut(s) 242, 262, 323, 451, 1391
NsiI ATGCAT 2 cut(s) 130, 1188
NspI RCATGY 1 cut(s) 1190
PaeI GCATGC 1 cut(s) 1190
PcsI WCGNNNNNNNCGW 1 cut(s) 1387
PdmI GAANNNNTTC 1 cut(s) 1490
PfeI GAWTC 6 cut(s) 1322, 1385, 1478, 1585, 1775, 1867
PfoI TCCNGGA 1 cut(s) 1845
PkrI GCNGC 2 cut(s) 60, 189
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 467, 1688, 1698
PspFI CCCAGC 1 cut(s) 1876
PspGI CCWGG 3 cut(s) 467, 1688, 1698
PspN4I GGNNCC 3 cut(s) 466, 936, 1641
PspPI GGNCC 2 cut(s) 143, 1639
PstNI CAGNNNCTG 1 cut(s) 1889
PsuI RGATCY 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 6 cut(s) 361, 1037, 1143, 1261, 1412, 1580
RsaNI GTAC 6 cut(s) 360, 1036, 1142, 1260, 1411, 1579
RseI CAYNNNNRTG 1 cut(s) 1185
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 2 cut(s) 59, 188
Sau3AI GATC 6 cut(s) 133, 432, 1177, 1374, 1420, 1518
Sau96I GGNCC 2 cut(s) 143, 1639
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 6 cut(s) 254, 255, 469, 1690, 1700, 1847
SduI GDGCHC 3 cut(s) 39, 447, 1173
SexAI ACCWGGT 1 cut(s) 1688
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 2 cut(s) 801, 909
SinI GGWCC 1 cut(s) 1639
SmaI CCCGGG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 1185
SphI GCATGC 1 cut(s) 1190
Sse9I AATT 9 cut(s) 319, 457, 474, 514, 531, 625, 642, 949, 1523
SsiI CCGC 5 cut(s) 27, 235, 1161, 1745, 1795
SspI AATATT 1 cut(s) 1531
StyD4I CCNGG 6 cut(s) 252, 253, 467, 1688, 1698, 1845
TaaI ACNGT 2 cut(s) 242, 248
TaiI ACGT 2 cut(s) 414, 453
TaqI TCGA 1 cut(s) 1373
TasI AATT 9 cut(s) 319, 457, 474, 514, 531, 625, 642, 949, 1523
TatI WGTACW 3 cut(s) 359, 1259, 1578
TfiI GAWTC 6 cut(s) 1322, 1385, 1478, 1585, 1775, 1867
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 403, 717
TseFI GTSAC 5 cut(s) 242, 262, 323, 451, 1391
TseI GCWGC 2 cut(s) 58, 187
Tsp45I GTSAC 5 cut(s) 242, 262, 323, 451, 1391
TspDTI ATGAA 2 cut(s) 1185, 1499
TspGWI ACGGA 3 cut(s) 702, 1053, 1092
TspMI CCCGGG 1 cut(s) 253
TspRI CASTG 2 cut(s) 403, 717
VneI GTGCAC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 1639
XapI RAATTY 1 cut(s) 1523
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 1190
XmaI CCCGGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 1490
Zsp2I ATGCAT 2 cut(s) 130, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.