Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006913

Physical Location & Seq

Genomic Coordinates Reverse (-)

999831 .. 1004878

Gene Structure 5048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGGCGGTGGAAGATTTGTGCCCGCCGTCTTCTGAAATTTGCACAGTACCGAATTCTGAGAGTCCTGAACCAGATGTGGAGCTGGGTTGTTCACGGAAAAAGAAGAAAAATAAGAAGAAAAGGTGTAAACTTGAAAGCAATGATAAGAGTTGTGAAAGTCCCTCCCTACAGTCTCAATTTGTACAGCTCTCAGATCAAGAAGCACTACAACCACTTACAGAGAAAAGTAATACAATAGCAGATTCAGAAAATCCCCAATCAAATGTGGAGCCGAGTCTTTCAACAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTCTAAAACCACTGAGACCAATGATACAAGTTGTGAAAGTCCTTCCCAACAGCCTCAACTTGTACAGCTTTCAGATCAACAAGCACCGCAACCACTTGCAGAGAAAATTACTACAATAACAGATTCAGAGAGTCACCAGTCAAATGTGGAGCTGAGTCTTTCACAAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGAGGAAGAACAAGAAAGGGTGTAAAACCCCTGAGACAAATGATAAAAGTTGTGAAAGTCCCTCTATACAGCCTCAACTTGTACAAGCAACAGATCAAGAGGTAGAAGTGCCACAACGCATTGAGGCCGTACAGCCTCAACTTGCACAAGTGACGGATCAAAAGCTAGAAGTGCCACAACCCATTGAGGATTCGAGTTTCTCAGTGAAAAACAAGAAAAGGAATGGGAAGAAAAGCCGTAAACCCCATGACTGTAATGATGAAGTGTGTGGCGTTTCTGTTGGTACTTCTGTTATGGAAAGTAATGTGCCAGCAGTAGATCCATATATAAAGCCTTCTGTTGAAATATCATTGGAGCAGCTTGTTGCGGAGCCACTTGTGAAGGGAATGAGTACAACAGCAAACTCAAAAAGGCCCAAACCCAATGCAGATTTTGGCTGCTCACAAGAAACGAAGAAAAAGAATCCAAAGAGAAATTGCAAAACCAATGAGAATAAAGAGCTATTGGTGGAAACAATGTCGCCAGAAGCAGATCTATCTCTTCAGCCTCCTCTTGCAATATTCTCTGAACAAGAGGTAGAGGTGGCACAACCACTTAATACTGGTACAGTGTGGAAAGAAACCAAGATTGATGAAGTTCCTTCCTTGTCACATTTGGCTCCAAAAGCTGATACTGAAGTAGTTGCTATCGGTAGAGAGGGCAATCTTTCTCAGAAAAAGCTTCTGATTCTTGATATTAATGGGCTGCTTGCTGATATTGTCCAGATGGAAGTTTTTATCCCCAGTAGTTTTAAACCAGACAAAATAATATCACGGAAAGCAGTTTTTAAGAGGCCATTTTGCGATGATTTTCTACAGTTCTGCTTTGACAGATTTAATGTGGGTGTGTGGTCTTCAAGAACCAAGGAAAATGTGAACTCGGTGATAGATTTTCTTTTGGGGGATTCGAAACATAAATTACTCTTTTGCTGGAACCAATCGCACTGCACTTCTACCAGTTTCAAGACGGTGAAGAACAAGAATAAGCCCCTCGTTTTGAAAGAGCTTAGAAAATTCTGGGAGAAGCTTGAGCCTGATCTTCCTTGGGCGAGAGGAGAGTACAATGAATCCAACACAGTATTATTGGATGATTCTCCATACAAGGCTTTGTGCAATCCGGTGAACACCGCCATATTCCCCAATTCATATCAGTTCAGGAACAGAAAAGATTCTTCATTAGGACCTGGAGGCGATATCCGTTCTTACCTGGAAGGGTTAGCTATGGCTGAGAGTGTCCAAAAATATGTGGAACAGAATCCATTTGGTCAGCAACCCATAACGAAATCAAATCCTTCTTGGAACTTCTATAGGAGAGTTATAGAGGATGTAAAACCCCTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030258 GO:0035091 GO:0035556 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048015 GO:0048017 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051716 GO:0052742 GO:0055044 GO:0065007 GO:0070273 GO:0070300 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 map00562 map01100 map04011 map04070

Pfam Domains

Protein Families

PI3Ka PI3_PI4_kinase

Protein Analysis

633

Amino Acids

71.08

Weight (kDa)

8.95

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	413 - 598	3.2e-18	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08480
malus_domestica	MD05G1066100.v1.1 MD05G1068100.v1.1
prunus_persica	Prupe.8G100000_v2.0.a1 Prupe.8G100000_v2.0.a1
pyrus_communis	pycom05g05950
rosa_chinensis	RchiOBHm_Chr6g0263821 RchiOBHm_Chr6g0263861
rosa_laevigata	RLG00000014309 RLG00000014310
rosa_multiflora	Rmu_sc0005300.1_g000001 Rmu_sc0005300.1_g000008
rosa_roxburghii	Rroxscaffold_7G00203850 Rroxscaffold_7G00203870
rosa_rugosa	Rorug06G0006500 Rorug06G0006500
rosa_samantha	Rh6AG126000 Rh6AG126200 Rh6BG122300 Rh6BG122500 Rh6CG120800 Rh6CG120900 Rh6DG108500 Rh6DG108600
rosa_wichuraiana	Rw6G010960 Rw6G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 23, 404, 887, 1686
AclWI	GGATC	2 cut(s)	684, 833
AcsI	RAATTY	3 cut(s)	36, 52, 1571
AcuI	CTGAAG	2 cut(s)	1046, 1215
AfaI	GTAC	9 cut(s)	48, 183, 381, 603, 651, 805, 913, 1126, 1619
AgsI	TTSAA	6 cut(s)	134, 282, 863, 1416, 1522, 1558
AjnI	CCWGG	2 cut(s)	1741, 1764
Alw26I	GTCTC	3 cut(s)	177, 326, 548
AlwI	GGATC	2 cut(s)	684, 833
AoxI	GGCC	3 cut(s)	645, 932, 1352
ApeKI	GCWGC	3 cut(s)	877, 957, 1264
ApoI	RAATTY	3 cut(s)	36, 52, 1571
AseI	ATTAAT	1 cut(s)	1257
Asp700I	GAANNNNTTC	1 cut(s)	1726
AspS9I	GGNCC	2 cut(s)	933, 1739
AsuHPI	GGTGA	4 cut(s)	443, 1453, 1540, 1690
AsuII	TTCGAA	1 cut(s)	1466
AvaII	GGWCC	1 cut(s)	1739
BaeGI	GKGCMC	1 cut(s)	23
BaeI	ACNNNNGTAYC	4 cut(s)	795, 828, 1182, 1215
BbsI	GAAGAC	2 cut(s)	21, 1404
BbvI	GCAGC	3 cut(s)	889, 944, 1251
BccI	CCATC	1 cut(s)	1279
BceAI	ACGGC	3 cut(s)	10, 632, 741
BciT130I	CCWGG	2 cut(s)	1743, 1766
BcoDI	GTCTC	3 cut(s)	177, 326, 548
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	3 cut(s)	167, 1373, 1864
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	3 cut(s)	878, 958, 1265
BlsI	GCNGC	3 cut(s)	879, 959, 1266
Bme1390I	CCNGG	2 cut(s)	1743, 1766
Bme18I	GGWCC	1 cut(s)	1739
BmgT120I	GGNCC	2 cut(s)	933, 1739
BmiI	GGNNCC	4 cut(s)	270, 891, 1179, 1493
BmrFI	CCNGG	2 cut(s)	1743, 1766
BmrI	ACTGGG	1 cut(s)	1296
BmuI	ACTGGG	1 cut(s)	1296
BpiI	GAAGAC	2 cut(s)	21, 1404
BpmI	CTGGAG	1 cut(s)	1764
Bpu14I	TTCGAA	1 cut(s)	1466
BpuEI	CTTGAG	1 cut(s)	1607
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	1422, 1601
BsaWI	WCCGGW	1 cut(s)	1675
Bse1I	ACTGG	4 cut(s)	454, 1126, 1302, 1515
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	1743, 1766
BseDI	CCNNGG	2 cut(s)	1422, 1601
BseGI	GGATG	2 cut(s)	1651, 1888
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	9 cut(s)	48, 204, 321, 461, 543, 735, 1244, 1776, 1886
BseNI	ACTGG	4 cut(s)	454, 1126, 1302, 1515
BseRI	GAGGAG	2 cut(s)	1059, 1626
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	889, 944, 1251
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	1489
BshFI	GGCC	3 cut(s)	647, 934, 1354
BsiSI	CCGG	1 cut(s)	1676
BslFI	GGGAC	2 cut(s)	144, 564
BsmAI	GTCTC	3 cut(s)	177, 326, 548
BsmFI	GGGAC	2 cut(s)	144, 564
BsnI	GGCC	3 cut(s)	647, 934, 1354
Bso31I	GGTCTC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	1466
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp1407I	TGTACA	3 cut(s)	181, 379, 601
Bsp143I	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
BspACI	CCGC	5 cut(s)	5, 23, 404, 887, 1686
BspANI	GGCC	3 cut(s)	647, 934, 1354
BspCNI	CTCAG	9 cut(s)	49, 203, 322, 462, 544, 734, 1243, 1777, 1887
BspLI	GGNNCC	4 cut(s)	270, 891, 1179, 1493
BspPI	GGATC	2 cut(s)	684, 833
BspT104I	TTCGAA	1 cut(s)	1466
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	145
BsrGI	TGTACA	3 cut(s)	181, 379, 601
BsrI	ACTGG	4 cut(s)	454, 1126, 1302, 1515
BssECI	CCNNGG	2 cut(s)	1422, 1601
BssMI	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
BssT1I	CCWWGG	2 cut(s)	1422, 1601
Bst2UI	CCWGG	2 cut(s)	1743, 1766
Bst4CI	ACNGT	7 cut(s)	46, 171, 773, 1129, 1377, 1528, 1636
Bst6I	CTCTTC	1 cut(s)	1065
BstAUI	TGTACA	3 cut(s)	181, 379, 601
BstBI	TTCGAA	1 cut(s)	1466
BstC8I	GCNNGC	3 cut(s)	23, 831, 1269
BstF5I	GGATG	2 cut(s)	1651, 1888
BstKTI	GATC	7 cut(s)	196, 394, 616, 679, 841, 1054, 1597
BstMAI	GTCTC	3 cut(s)	177, 326, 548
BstMBI	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
BstMWI	GCNNNNNNNGC	2 cut(s)	691, 1184
BstNI	CCWGG	2 cut(s)	1743, 1766
BstSCI	CCNGG	2 cut(s)	1741, 1764
BstSFI	CTRYAG	3 cut(s)	167, 1373, 1864
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	889, 944, 1251
BstV2I	GAAGAC	2 cut(s)	21, 1404
BstX2I	RGATCY	2 cut(s)	838, 1051
BstYI	RGATCY	2 cut(s)	838, 1051
BsuRI	GGCC	3 cut(s)	647, 934, 1354
BtgZI	GCGATG	1 cut(s)	1377
BtsCI	GGATG	2 cut(s)	1651, 1888
BtsI	GCAGTG	1 cut(s)	1501
BtsIMutI	CAGTG	4 cut(s)	327, 729, 1134, 1501
Cac8I	GCNNGC	3 cut(s)	23, 831, 1269
Cfr13I	GGNCC	2 cut(s)	933, 1739
Csp6I	GTAC	9 cut(s)	47, 182, 380, 602, 650, 804, 912, 1125, 1618
CviAII	CATG	1 cut(s)	767
CviQI	GTAC	9 cut(s)	47, 182, 380, 602, 650, 804, 912, 1125, 1618
DpnI	GATC	7 cut(s)	195, 393, 615, 678, 840, 1053, 1596
DpnII	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
DraI	TTTAAA	1 cut(s)	1312
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
Eco130I	CCWWGG	2 cut(s)	1422, 1601
Eco31I	GGTCTC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	1753
Eco47I	GGWCC	1 cut(s)	1739
Eco57I	CTGAAG	2 cut(s)	1046, 1215
EcoO109I	RGGNCCY	1 cut(s)	1739
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	1741, 1764
EcoRV	GATATC	1 cut(s)	1753
EcoT14I	CCWWGG	2 cut(s)	1422, 1601
ErhI	CCWWGG	2 cut(s)	1422, 1601
FaeI	CATG	1 cut(s)	770
FaqI	GGGAC	2 cut(s)	144, 564
FatI	CATG	1 cut(s)	766
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	878, 958, 1265
FokI	GGATG	2 cut(s)	1658, 1895
Fsp4HI	GCNGC	3 cut(s)	878, 958, 1265
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	3 cut(s)	878, 958, 1265
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	1764
HaeIII	GGCC	3 cut(s)	647, 934, 1354
HapII	CCGG	1 cut(s)	1676
Hin1II	CATG	1 cut(s)	770
HindIII	AAGCTT	2 cut(s)	1238, 1583
HpaII	CCGG	1 cut(s)	1676
HphI	GGTGA	4 cut(s)	443, 1453, 1540, 1690
Hpy166II	GTNNAC	5 cut(s)	92, 128, 761, 1435, 1681
Hpy188I	TCNGA	9 cut(s)	34, 58, 193, 247, 391, 445, 1087, 1233, 1245
Hpy188III	TCNNGA	8 cut(s)	65, 197, 617, 1250, 1282, 1416, 1522, 1714
Hpy8I	GTNNAC	5 cut(s)	92, 128, 761, 1435, 1681
HpyAV	CCTTC	6 cut(s)	369, 864, 895, 1170, 1763, 1860
HpyCH4III	ACNGT	7 cut(s)	46, 171, 773, 1129, 1377, 1528, 1636
HpyCH4V	TGCA	8 cut(s)	42, 416, 665, 947, 999, 1076, 1506, 1671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	691, 1184
Hsp92II	CATG	1 cut(s)	770
Kzo9I	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
LmnI	GCTCC	6 cut(s)	79, 268, 466, 874, 889, 1183
Lsp1109I	GCAGC	3 cut(s)	889, 944, 1251
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	3 cut(s)	449, 670, 1167
MalI	GATC	7 cut(s)	195, 393, 615, 678, 840, 1053, 1596
MboI	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
MflI	RGATCY	2 cut(s)	838, 1051
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	8 cut(s)	36, 52, 176, 423, 994, 1475, 1571, 1699
MlyI	GAGTC	4 cut(s)	70, 283, 457, 481
MmeI	TCCRAC	1 cut(s)	1653
MroXI	GAANNNNTTC	1 cut(s)	1726
MseI	TTAA	5 cut(s)	1116, 1257, 1311, 1347, 1395
MspI	CCGG	1 cut(s)	1676
MspR9I	CCNGG	2 cut(s)	1743, 1766
MvaI	CCWGG	2 cut(s)	1743, 1766
MwoI	GCNNNNNNNGC	2 cut(s)	691, 1184
NdeII	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
NlaIII	CATG	1 cut(s)	770
NlaIV	GGNNCC	4 cut(s)	270, 891, 1179, 1493
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	3 cut(s)	449, 670, 1167
NspV	TTCGAA	1 cut(s)	1466
PdmI	GAANNNNTTC	1 cut(s)	1726
PkrI	GCNGC	3 cut(s)	879, 959, 1266
PleI	GAGTC	4 cut(s)	69, 282, 456, 480
PpsI	GAGTC	4 cut(s)	69, 282, 456, 480
PpuMI	RGGWCCY	1 cut(s)	1739
PshBI	ATTAAT	1 cut(s)	1257
Psp5II	RGGWCCY	1 cut(s)	1739
Psp6I	CCWGG	2 cut(s)	1741, 1764
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	1741, 1764
PspN4I	GGNNCC	4 cut(s)	270, 891, 1179, 1493
PspPI	GGNCC	2 cut(s)	933, 1739
PspPPI	RGGWCCY	1 cut(s)	1739
PsuI	RGATCY	2 cut(s)	838, 1051
RsaI	GTAC	9 cut(s)	48, 183, 381, 603, 651, 805, 913, 1126, 1619
RsaNI	GTAC	9 cut(s)	47, 182, 380, 602, 650, 804, 912, 1125, 1618
SaqAI	TTAA	5 cut(s)	1116, 1257, 1311, 1347, 1395
SatI	GCNGC	3 cut(s)	878, 958, 1265
Sau3AI	GATC	7 cut(s)	193, 391, 613, 676, 838, 1051, 1594
Sau96I	GGNCC	2 cut(s)	933, 1739
SchI	GAGTC	4 cut(s)	70, 283, 457, 481
ScrFI	CCNGG	2 cut(s)	1743, 1766
SduI	GDGCHC	1 cut(s)	23
SfcI	CTRYAG	3 cut(s)	167, 1373, 1864
SfuI	TTCGAA	1 cut(s)	1466
SinI	GGWCC	1 cut(s)	1739
SmlI	CTYRAG	1 cut(s)	1586
SmoI	CTYRAG	1 cut(s)	1586
Sse9I	AATT	8 cut(s)	36, 52, 176, 423, 994, 1475, 1571, 1699
SsiI	CCGC	5 cut(s)	5, 23, 404, 887, 1686
SspI	AATATT	1 cut(s)	1080
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	1741, 1764
StyI	CCWWGG	2 cut(s)	1422, 1601
TaaI	ACNGT	7 cut(s)	46, 171, 773, 1129, 1377, 1528, 1636
TaqI	TCGA	2 cut(s)	713, 1466
TasI	AATT	8 cut(s)	36, 52, 176, 423, 994, 1475, 1571, 1699
TatI	WGTACW	5 cut(s)	181, 379, 601, 911, 1617
Tru1I	TTAA	5 cut(s)	1116, 1257, 1311, 1347, 1395
Tru9I	TTAA	5 cut(s)	1116, 1257, 1311, 1347, 1395
TscAI	CASTG	4 cut(s)	334, 729, 1134, 1508
TseFI	GTSAC	3 cut(s)	449, 670, 1167
TseI	GCWGC	3 cut(s)	877, 957, 1264
Tsp45I	GTSAC	3 cut(s)	449, 670, 1167
TspDTI	ATGAA	5 cut(s)	795, 1167, 1638, 1692, 1722
TspGWI	ACGGA	4 cut(s)	109, 689, 1348, 1745
TspRI	CASTG	4 cut(s)	334, 729, 1134, 1508
VpaK11BI	GGWCC	1 cut(s)	1739
VspI	ATTAAT	1 cut(s)	1257
XapI	RAATTY	3 cut(s)	36, 52, 1571
XmnI	GAANNNNTTC	1 cut(s)	1726
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.