Rh6DG108500

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006913
Physical Location & Seq
Reverse (-)
14117695 .. 14120263
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG108500.1

Sequence Viewer

Length: 1740 bp
ATGGGCGTTCGATTCATCATCAGCTTCTACCTTCTGTCGTTAGTAGTGTGTCGTGAGGCCAATGGAGCAAGGAATGTACTCAAGCAGGAGCCAAAAGAAGAAGATGCACCATACATTACTAGTTATGGAATCGAAGATGGCATGAAAGAGGTCGGAGCACCTTACATAACTCAGTATGGTACAAAAGAAGGCAAAGTGGAACAGGTCGAAGCTCCTTACATAACTCAGTACGGTACAGAAGAAGGCAAAGTGGAAGTGGTCGAAGCTCCTTACATAACCGGGTACATTTCTGCGGAAGGCAACACCAAGGAAGTAGAGACGCCATACATAACAGGATATATTTCCGCACAAGACACGAAGGGCACAAAGGAAGTGGAGGCGCCTTACATCACTGGATACATTTCCAAACGAGACACAAAGAGCACAAAAGATGTAGAGGCACCTTACATAACACAATATCAAAACAAAGAGGCTTCCTACAATACCCAGTATGGAACGAAAGAAGGAAAGAATAAGGTAGAGGAGCCTTACCTAACTGGTTACAAGACCACAAGGGAGTCGAAAGAGGTAGAAGCGCCTTACGTAACAGGGTACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTACATAACCGGATACATTTCCGCACAAGGCAGCAAGCTCAAGAAAGAGGTAGAGGCACCTTACATAACCGGATACATTTCTGCACAAGGCACAAATGGCAAGGAGGTAGAGGCGCCTTACATAACTGGATACATTTCCGCACAAGGCACAAAGCTCAAGAAGGAGGTAGAGGCGCCTTATATAACTGGATATATTTCCGCACAAGGCACAAAGGGCAAGAAGGAAGTAGAGGCGCCTTATATAACCGGATATATTTCTGCACAAGGCGCGAAAAACGGCGAACATCAGAAGCATGTACATCCACCTTCCCAAAATGGAGCAAAGGATGTGGTTTCGGGTAAGGAGTTACCTATGGAACATCAACATCATGATCATATGCATGCACATTCATCATCCTCCCTGGATCATACTGAGGCACTCAAGCAAGGATTTTTTACTTTTGAGGATTTCTACAAAGGGAATGCACTGCCACTCAACTTCCCCAAACAAGACCATTCTCGTTTCTTGCCTAAAGCAACAGCCGATTCCATTCCATTTTCAACATCACAGCTCCCACACCTTCTCCAACTCTTCTCAACCCCACGCGACTCTCGTGATGCAAAACACATGGCCTGGACACTCGACCAGTGCGAACTGAAACCCATTAAGGGGGAGACGAAGTTCTGTGCTACTTCTCTAGAATCCATGATAGATTTTGTTCAAAAAATCATTGGTTCAGGGGTCAACTTCAATATTCTCTCTACCACCCACCCAGAAACCTCAACTGCCATCACACAAAAGTACACTATCTTGGATGAGCCCAAACAAGTCTTAGCTTCCAAAATGGTCTTTTGCCACCCGGTCCCTTATCCTTATGCTGTTTTCTTCTGCCACCACTTTGAGAACGATACCAAGTTCTTCAAGGTTTCACTGGGAGGCGAGAACGGAGATAAGGTGGAAGCCGTAGCTGTTTGCCACATGGACACTTCTGATTGGGACCCTAACCACAGTTTGTTTCGCTTATTGGGAATCAAGGCTGGTGCTTCTTCACCAGTGTGCCATTTCTTCCCTGGAAATCATCTAGTTTGGATTCCATCATCACCAACAACAGCTACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

579

Amino Acids

64.26

Weight (kDa)

6.11

Isoelectric Point (pI)

23.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 357 - 570 1.1e-74 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 7 cut(s) 379, 439, 634, 694, 751, 811, 871
AccII CGCG 2 cut(s) 908, 1224
AciI CCGC 6 cut(s) 293, 345, 600, 660, 777, 837
AclWI GGATC 1 cut(s) 1050
AcyI GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
AfaI GTAC 8 cut(s) 78, 181, 230, 235, 284, 593, 936, 1421
AfiI CCNNNNNNNGG 2 cut(s) 1286, 1287
AgsI TTSAA 4 cut(s) 1179, 1340, 1369, 1540
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 3 cut(s) 1038, 1250, 1687
AleI CACNNNNGTG 1 cut(s) 1672
AloI GAACNNNNNNTCC 2 cut(s) 1283, 1315
Alw21I GWGCWC 2 cut(s) 160, 425
Alw26I GTCTC 3 cut(s) 311, 405, 1286
AlwI GGATC 1 cut(s) 1050
AoxI GGCC 2 cut(s) 57, 1248
ApeKI GCWGC 1 cut(s) 669
AspLEI GCGC 7 cut(s) 382, 577, 637, 754, 814, 874, 908
AspS9I GGNCC 2 cut(s) 1480, 1615
AsuC2I CCSGG 2 cut(s) 280, 1478
AsuHPI GGTGA 2 cut(s) 1659, 1710
AvaII GGWCC 2 cut(s) 1480, 1615
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 7 cut(s) 379, 439, 634, 694, 751, 811, 871
BanII GRGCYC 1 cut(s) 1440
BauI CACGAG 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 160, 425
BbvI GCAGC 1 cut(s) 681
BccI CCATC 3 cut(s) 131, 1415, 1720
BceAI ACGGC 2 cut(s) 931, 1565
BciT130I CCWGG 3 cut(s) 1040, 1252, 1689
BciVI GTATCC 4 cut(s) 389, 644, 704, 761
BclI TGATCA 1 cut(s) 1009
BcnI CCSGG 2 cut(s) 280, 1478
BcoDI GTCTC 3 cut(s) 311, 405, 1286
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 3 cut(s) 120, 1316, 1700
BfoI RGCGCY 6 cut(s) 383, 578, 638, 755, 815, 875
BfuI GTATCC 4 cut(s) 389, 644, 704, 761
BisI GCNGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 671
Bme1390I CCNGG 5 cut(s) 280, 1040, 1252, 1478, 1689
Bme18I GGWCC 2 cut(s) 1480, 1615
BmgT120I GGNCC 2 cut(s) 1480, 1615
BmrFI CCNGG 5 cut(s) 280, 1040, 1252, 1478, 1689
BmrI ACTGGG 2 cut(s) 481, 1559
BmsI GCATC 2 cut(s) 94, 1225
BmuI ACTGGG 2 cut(s) 481, 1559
BpuEI CTTGAG 5 cut(s) 65, 602, 662, 779, 1043
BpuMI CCSGG 2 cut(s) 280, 1478
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
BsaJI CCNNGG 3 cut(s) 306, 1038, 1687
BsaWI WCCGGW 3 cut(s) 647, 707, 884
BsaXI ACNNNNNCTCC 6 cut(s) 1185, 1215, 1283, 1313, 1557, 1587
Bsc4I CCNNNNNNNGG 2 cut(s) 1286, 1287
Bse1I ACTGG 8 cut(s) 397, 487, 541, 769, 829, 1264, 1554, 1670
BseBI CCWGG 3 cut(s) 1040, 1252, 1689
BseDI CCNNGG 3 cut(s) 306, 1038, 1687
BseGI GGATG 4 cut(s) 937, 970, 1031, 1438
BseLI CCNNNNNNNGG 2 cut(s) 1286, 1287
BseMII CTCAG 3 cut(s) 185, 239, 1041
BseNI ACTGG 8 cut(s) 397, 487, 541, 769, 829, 1264, 1554, 1670
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 1 cut(s) 681
BsgI GTGCAG 2 cut(s) 705, 882
Bsh1236I CGCG 2 cut(s) 908, 1224
BshFI GGCC 2 cut(s) 59, 1250
BshNI GGYRCC 7 cut(s) 379, 439, 634, 694, 751, 811, 871
BsiHKAI GWGCWC 2 cut(s) 160, 425
BsiSI CCGG 5 cut(s) 279, 648, 708, 885, 1478
BslFI GGGAC 2 cut(s) 1466, 1628
BslI CCNNNNNNNGG 2 cut(s) 1286, 1287
BsmAI GTCTC 3 cut(s) 311, 405, 1286
BsmBI CGTCTC 2 cut(s) 311, 1286
BsmFI GGGAC 2 cut(s) 1466, 1628
BsmI GAATGC 1 cut(s) 1105
BsnI GGCC 2 cut(s) 59, 1250
Bsp1286I GDGCHC 4 cut(s) 160, 365, 425, 1440
Bsp1407I TGTACA 1 cut(s) 934
Bsp143I GATC 2 cut(s) 1009, 1042
BspACI CCGC 6 cut(s) 293, 345, 600, 660, 777, 837
BspANI GGCC 2 cut(s) 59, 1250
BspCNI CTCAG 3 cut(s) 184, 238, 1042
BspFNI CGCG 2 cut(s) 908, 1224
BspHI TCATGA 1 cut(s) 1006
BspPI GGATC 1 cut(s) 1050
BspT107I GGYRCC 7 cut(s) 379, 439, 634, 694, 751, 811, 871
BsrGI TGTACA 1 cut(s) 934
BsrI ACTGG 8 cut(s) 397, 487, 541, 769, 829, 1264, 1554, 1670
BssECI CCNNGG 3 cut(s) 306, 1038, 1687
BssMI GATC 2 cut(s) 1009, 1042
BssNI GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
BssSI CACGAG 1 cut(s) 1230
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 3 cut(s) 1040, 1252, 1689
Bst4CI ACNGT 2 cut(s) 233, 1628
Bst6I CTCTTC 1 cut(s) 1214
BstACI GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
BstAUI TGTACA 1 cut(s) 934
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 674, 1020
BstDEI CTNAG 4 cut(s) 171, 225, 1050, 1450
BstF5I GGATG 4 cut(s) 937, 970, 1031, 1438
BstFNI CGCG 2 cut(s) 908, 1224
BstH2I RGCGCY 6 cut(s) 383, 578, 638, 755, 815, 875
BstHHI GCGC 7 cut(s) 382, 577, 637, 754, 814, 874, 908
BstKTI GATC 2 cut(s) 1012, 1045
BstMAI GTCTC 3 cut(s) 311, 405, 1286
BstMBI GATC 2 cut(s) 1009, 1042
BstMWI GCNNNNNNNGC 4 cut(s) 65, 735, 852, 905
BstNI CCWGG 3 cut(s) 1040, 1252, 1689
BstNSI RCATGY 2 cut(s) 935, 1022
BstSCI CCNGG 5 cut(s) 278, 1038, 1250, 1476, 1687
BstSLI GKGCMC 1 cut(s) 365
BstSNI TACGTA 1 cut(s) 583
BstUI CGCG 2 cut(s) 908, 1224
BstV1I GCAGC 1 cut(s) 681
BsuI GTATCC 4 cut(s) 389, 644, 704, 761
BsuRI GGCC 2 cut(s) 59, 1250
BtsCI GGATG 4 cut(s) 937, 970, 1031, 1438
BtsI GCAGTG 1 cut(s) 1103
BtsIMutI CAGTG 5 cut(s) 390, 1103, 1271, 1547, 1677
Cac8I GCNNGC 2 cut(s) 674, 1020
CciI TCATGA 1 cut(s) 1006
CfoI GCGC 7 cut(s) 382, 577, 637, 754, 814, 874, 908
Cfr13I GGNCC 2 cut(s) 1480, 1615
CseI GACGC 1 cut(s) 328
Csp6I GTAC 8 cut(s) 77, 180, 229, 234, 283, 592, 935, 1420
CspCI CAANNNNNGTGG 4 cut(s) 354, 389, 948, 983
CviAII CATG 7 cut(s) 142, 932, 1007, 1019, 1246, 1324, 1597
CviQI GTAC 8 cut(s) 77, 180, 229, 234, 283, 592, 935, 1420
DdeI CTNAG 4 cut(s) 171, 225, 1050, 1450
DinI GGCGCC 5 cut(s) 381, 636, 753, 813, 873
DpnI GATC 2 cut(s) 1011, 1044
DpnII GATC 2 cut(s) 1009, 1042
Eam1104I CTCTTC 1 cut(s) 1214
EarI CTCTTC 1 cut(s) 1214
Eco105I TACGTA 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 1440
Eco47I GGWCC 2 cut(s) 1480, 1615
EcoO109I RGGNCCY 1 cut(s) 1615
EcoRII CCWGG 3 cut(s) 1038, 1250, 1687
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 1020
EcoT38I GRGCYC 1 cut(s) 1440
EgeI GGCGCC 5 cut(s) 381, 636, 753, 813, 873
EheI GGCGCC 5 cut(s) 381, 636, 753, 813, 873
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 2 cut(s) 311, 1286
FaeI CATG 7 cut(s) 145, 935, 1010, 1022, 1249, 1327, 1600
FaqI GGGAC 2 cut(s) 1466, 1628
FatI CATG 7 cut(s) 141, 931, 1006, 1018, 1245, 1323, 1596
FauNDI CATATG 1 cut(s) 1014
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 1 cut(s) 670
FokI GGATG 4 cut(s) 924, 977, 1018, 1445
FriOI GRGCYC 1 cut(s) 1440
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 3 cut(s) 120, 1316, 1700
GlaI GCGC 7 cut(s) 381, 576, 636, 753, 813, 873, 907
GluI GCNGC 1 cut(s) 670
HaeII RGCGCY 6 cut(s) 383, 578, 638, 755, 815, 875
HaeIII GGCC 2 cut(s) 59, 1250
HapII CCGG 5 cut(s) 279, 648, 708, 885, 1478
HgaI GACGC 1 cut(s) 328
HhaI GCGC 7 cut(s) 382, 577, 637, 754, 814, 874, 908
Hin1I GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
Hin1II CATG 7 cut(s) 145, 935, 1010, 1022, 1249, 1327, 1600
Hin6I GCGC 7 cut(s) 380, 575, 635, 752, 812, 872, 906
HinP1I GCGC 7 cut(s) 380, 575, 635, 752, 812, 872, 906
HincII GTYRAC 1 cut(s) 1363
HindII GTYRAC 1 cut(s) 1363
HinfI GANTC 8 cut(s) 12, 129, 557, 1163, 1226, 1319, 1647, 1708
HpaII CCGG 5 cut(s) 279, 648, 708, 885, 1478
HphI GGTGA 2 cut(s) 1659, 1710
Hpy166II GTNNAC 2 cut(s) 1363, 1422
Hpy188I TCNGA 3 cut(s) 155, 927, 1609
Hpy188III TCNNGA 7 cut(s) 53, 619, 679, 796, 1007, 1232, 1316
Hpy8I GTNNAC 2 cut(s) 1363, 1422
HpyCH4III ACNGT 2 cut(s) 233, 1628
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 7 cut(s) 107, 722, 899, 1018, 1022, 1103, 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 735, 852, 905
HpyF3I CTNAG 4 cut(s) 171, 225, 1050, 1450
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 6 cut(s) 320, 380, 635, 752, 812, 872
Hsp92II CATG 7 cut(s) 145, 935, 1010, 1022, 1249, 1327, 1600
HspAI GCGC 7 cut(s) 380, 575, 635, 752, 812, 872, 906
KasI GGCGCC 5 cut(s) 379, 634, 751, 811, 871
KflI GGGWCCC 1 cut(s) 1615
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 2 cut(s) 1009, 1042
LmnI GCTCC 8 cut(s) 65, 88, 155, 217, 271, 523, 956, 1194
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 2 cut(s) 94, 1225
MaeI CTAG 3 cut(s) 120, 1316, 1700
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 3 cut(s) 539, 583, 984
MalI GATC 2 cut(s) 1011, 1044
MboI GATC 2 cut(s) 1009, 1042
MboII GAAGA 9 cut(s) 110, 113, 146, 251, 1201, 1495, 1528, 1656, 1675
MhlI GDGCHC 4 cut(s) 160, 365, 425, 1440
Mly113I GGCGCC 5 cut(s) 380, 635, 752, 812, 872
MlyI GAGTC 2 cut(s) 566, 1220
MmeI TCCRAC 2 cut(s) 133, 1228
Mph1103I ATGCAT 1 cut(s) 1020
MseI TTAA 2 cut(s) 1284, 1738
MslI CAYNNNNRTG 2 cut(s) 1017, 1672
MspI CCGG 5 cut(s) 279, 648, 708, 885, 1478
MspR9I CCNGG 5 cut(s) 280, 1040, 1252, 1478, 1689
Mva1269I GAATGC 1 cut(s) 1105
MvaI CCWGG 3 cut(s) 1040, 1252, 1689
MvnI CGCG 2 cut(s) 908, 1224
MwoI GCNNNNNNNGC 4 cut(s) 65, 735, 852, 905
NarI GGCGCC 5 cut(s) 380, 635, 752, 812, 872
NciI CCSGG 2 cut(s) 280, 1478
NdeI CATATG 1 cut(s) 1014
NdeII GATC 2 cut(s) 1009, 1042
NlaIII CATG 7 cut(s) 145, 935, 1010, 1022, 1249, 1327, 1600
NsiI ATGCAT 1 cut(s) 1020
NspI RCATGY 2 cut(s) 935, 1022
OliI CACNNNNGTG 1 cut(s) 1672
PaeI GCATGC 1 cut(s) 1022
PagI TCATGA 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 1228, 1266
PctI GAATGC 1 cut(s) 1105
PfeI GAWTC 6 cut(s) 12, 129, 1163, 1319, 1647, 1708
PkrI GCNGC 1 cut(s) 671
PleI GAGTC 2 cut(s) 565, 1220
PluTI GGCGCC 5 cut(s) 383, 638, 755, 815, 875
PpsI GAGTC 2 cut(s) 565, 1220
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 1615
Psp5II RGGWCCY 1 cut(s) 1615
Psp6I CCWGG 3 cut(s) 1038, 1250, 1687
PspGI CCWGG 3 cut(s) 1038, 1250, 1687
PspPI GGNCC 2 cut(s) 1480, 1615
PspPPI RGGWCCY 1 cut(s) 1615
RsaI GTAC 8 cut(s) 78, 181, 230, 235, 284, 593, 936, 1421
RsaNI GTAC 8 cut(s) 77, 180, 229, 234, 283, 592, 935, 1420
RseI CAYNNNNRTG 2 cut(s) 1017, 1672
SaqAI TTAA 2 cut(s) 1284, 1738
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 2 cut(s) 1009, 1042
Sau96I GGNCC 2 cut(s) 1480, 1615
SchI GAGTC 2 cut(s) 566, 1220
ScrFI CCNGG 5 cut(s) 280, 1040, 1252, 1478, 1689
SduI GDGCHC 4 cut(s) 160, 365, 425, 1440
SfaNI GCATC 2 cut(s) 94, 1225
SfoI GGCGCC 5 cut(s) 381, 636, 753, 813, 873
SinI GGWCC 2 cut(s) 1480, 1615
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1672
SmlI CTYRAG 5 cut(s) 80, 617, 677, 794, 1058
SmoI CTYRAG 5 cut(s) 80, 617, 677, 794, 1058
SnaBI TACGTA 1 cut(s) 583
SpeI ACTAGT 1 cut(s) 119
SphI GCATGC 1 cut(s) 1022
SsiI CCGC 6 cut(s) 293, 345, 600, 660, 777, 837
SspDI GGCGCC 5 cut(s) 379, 634, 751, 811, 871
SspI AATATT 1 cut(s) 1372
SspMI CTAG 3 cut(s) 120, 1316, 1700
StyD4I CCNGG 5 cut(s) 278, 1038, 1250, 1476, 1687
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 233, 1628
TaiI ACGT 1 cut(s) 585
TaqI TCGA 6 cut(s) 10, 132, 207, 261, 560, 1260
TatI WGTACW 3 cut(s) 76, 934, 1419
TfiI GAWTC 6 cut(s) 12, 129, 1163, 1319, 1647, 1708
Tru1I TTAA 2 cut(s) 1284, 1738
Tru9I TTAA 2 cut(s) 1284, 1738
TscAI CASTG 5 cut(s) 397, 1110, 1271, 1554, 1677
TseI GCWGC 1 cut(s) 669
TspDTI ATGAA 3 cut(s) 4, 158, 1017
TspGWI ACGGA 1 cut(s) 1578
TspRI CASTG 5 cut(s) 397, 1110, 1271, 1554, 1677
VpaK11BI GGWCC 2 cut(s) 1480, 1615
XbaI TCTAGA 1 cut(s) 1315
XceI RCATGY 2 cut(s) 935, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 1685
XspI CTAG 3 cut(s) 120, 1316, 1700
Zsp2I ATGCAT 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.