Rh6CG120900

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006913
Physical Location & Seq
Reverse (-)
14222011 .. 14224420
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG120900.1

Sequence Viewer

Length: 1554 bp
ATGGGCTTTCAATTCATCATCTTCTGCCTTCTGTTCTTAGTGTGTCCTTATGCCAGTGGAGCATGGGACGTAAGCACAAAACAAGTGGAGATCAATAGCGAGCCCTACGTCACAAATTATGGAGCCAGGAAAATTGTCAAAGAGTTGGAGGTGAGTGAGCCTTATATGGCCAATTATGGTGGCAGAAAAATTGTGAAAGAGGTGATAAGTGTGCCTTACATGACCAACTATGGTGCTAGAGAAAGTGTGAAAGAAGTGGAGAAAAGCGAGCCTTACATGACCAATTATGGAGCTAGAAAAATTGTGAAAGAAGTGGAGGTAAGCGAGCCATACATGACCAACTACGGAGCTAGAGAAAGTGTGGAAGCAGTGGAGGTAAGAGAGCCTTACATGACCAACTATGGAGTTAGAGAAAGTGCAGTTGAGGAAAGCGAGCCTTCCATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGAAACCTTACATGACGAACTATGGAGCAAGAAAAAGTGTGAAAGAAGTGAAGGCAAGAGAGCCTTACATGACCAACTATGGAGCTACAGAAAGTGTGAAAGAAGCTGAGGAGCCTTACATGACCAATTATGGAAATAAAGAGGCTTCTTACATTACCCAATATGGAAACAAAGAAGACATAAAAGAAACAGAGGCTTCTTACATAACCCAGTACGGAGACAAAGAAGCCGAGACTACTTACATAAATCAGAACGGAAACAAAGAAACTGAGGCTTCTTACATAACCCAGTATGGCACACAAGGAGGAGAAAACAAGGTACAGAAGCCAGTTCCATCCGCCCATGAGCACCATGATCATATGCATGCACATTCATCATCTCGCAATGAGGCACACGAGCAAGGCTTTTTCACTTTGGTTGATTTCCATAAGGGGAGTACAATGCCACTCAACTTCCCAAACCAAGACCATTCTCCTTTCTTGCCTAAGAAAACAGCTGATTCCCTTCCATTCTCAACATCACAACTCCCACACCTTCTCCAACTCTTCTCGATCCCACGCGATTCTCGTGACGCCAAACACATGGCGTACACACTTGATCAATGCGAGCAAAAACCCATCAAGGGTGAGACCAAGTTTTGTGCTACTTCACTAGAATCAATGAATGATTTCGTTCACAAAATCATTGGTTCTGGGATCAAATTCAATATTCTCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCACCACTTTGAGAGCGACACCAGGTTCTTCCAGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

517

Amino Acids

58.39

Weight (kDa)

5.67

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 296 - 509 2.6e-72 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1041
AciI CCGC 3 cut(s) 819, 1403, 1453
AclWI GGATC 2 cut(s) 1027, 1184
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 5 cut(s) 695, 801, 919, 1070, 1238
AfiI CCNNNNNNNGG 2 cut(s) 1103, 1459
AgsI TTSAA 2 cut(s) 11, 1186
AjnI CCWGG 3 cut(s) 125, 1346, 1356
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 4 cut(s) 693, 707, 1103, 1366
AlwI GGATC 2 cut(s) 1027, 1184
AlwNI CAGNNNCTG 1 cut(s) 1547
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 1181
Asp700I GAANNNNTTC 1 cut(s) 1148
AspS9I GGNCC 1 cut(s) 1297
AsuC2I CCSGG 1 cut(s) 1505
AsuHPI GGTGA 4 cut(s) 163, 214, 1118, 1385
AvaII GGWCC 1 cut(s) 1297
BaeI ACNNNNGTAYC 2 cut(s) 1447, 1480
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 2 cut(s) 875, 1047
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 831
BbvCI CCTCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 823, 1106, 1299
BceAI ACGGC 1 cut(s) 1382
BciT130I CCWGG 3 cut(s) 127, 1348, 1358
BclI TGATCA 2 cut(s) 835, 1078
BcnI CCSGG 1 cut(s) 1505
BcoDI GTCTC 4 cut(s) 693, 707, 1103, 1366
BfaI CTAG 6 cut(s) 237, 294, 351, 1133, 1367, 1473
BfmI CTRYAG 2 cut(s) 459, 567
Bme1390I CCNGG 4 cut(s) 127, 1348, 1358, 1505
Bme18I GGWCC 1 cut(s) 1297
BmgT120I GGNCC 1 cut(s) 1297
BmiI GGNNCC 3 cut(s) 124, 594, 1299
BmrFI CCNGG 4 cut(s) 127, 1348, 1358, 1505
BmrI ACTGGG 2 cut(s) 685, 763
BmuI ACTGGG 2 cut(s) 685, 763
BpiI GAAGAC 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 1505
BsaHI GRCGYC 1 cut(s) 1053
BsaI GGTCTC 2 cut(s) 1103, 1366
BsaWI WCCGGW 2 cut(s) 1294, 1486
BsaXI ACNNNNNCTCC 4 cut(s) 1002, 1032, 1374, 1404
Bsc4I CCNNNNNNNGG 2 cut(s) 1103, 1459
Bse1I ACTGG 4 cut(s) 54, 691, 769, 809
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 3 cut(s) 127, 1348, 1358
BseGI GGATG 2 cut(s) 815, 1291
BseLI CCNNNNNNNGG 2 cut(s) 1103, 1459
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 4 cut(s) 471, 579, 741, 1456
BseNI ACTGG 4 cut(s) 54, 691, 769, 809
BseRI GAGGAG 3 cut(s) 605, 801, 1471
BseYI CCCAGC 1 cut(s) 1534
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 1041
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 831
BsiSI CCGG 3 cut(s) 1295, 1487, 1505
BslFI GGGAC 2 cut(s) 80, 1283
BslI CCNNNNNNNGG 2 cut(s) 1103, 1459
BsmAI GTCTC 4 cut(s) 693, 707, 1103, 1366
BsmFI GGGAC 2 cut(s) 80, 1283
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 2 cut(s) 1103, 1366
Bsp1286I GDGCHC 2 cut(s) 105, 831
Bsp143I GATC 5 cut(s) 90, 835, 1032, 1078, 1176
BspACI CCGC 3 cut(s) 819, 1403, 1453
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 4 cut(s) 472, 580, 742, 1455
BspFNI CGCG 1 cut(s) 1041
BspLI GGNNCC 3 cut(s) 124, 594, 1299
BspPI GGATC 2 cut(s) 1027, 1184
BspTNI GGTCTC 2 cut(s) 1103, 1366
BsrDI GCAATG 1 cut(s) 871
BsrI ACTGG 4 cut(s) 54, 691, 769, 809
BssMI GATC 5 cut(s) 90, 835, 1032, 1078, 1176
BssNI GRCGYC 1 cut(s) 1053
BssSI CACGAG 2 cut(s) 875, 1047
Bst2BI CACGAG 2 cut(s) 875, 1047
Bst2UI CCWGG 3 cut(s) 127, 1348, 1358
Bst6I CTCTTC 1 cut(s) 1031
BstACI GRCGYC 1 cut(s) 1053
BstC8I GCNNGC 6 cut(s) 101, 269, 326, 434, 846, 1088
BstDEI CTNAG 7 cut(s) 37, 480, 588, 750, 966, 1437, 1442
BstF5I GGATG 2 cut(s) 815, 1291
BstFNI CGCG 1 cut(s) 1041
BstKTI GATC 5 cut(s) 93, 838, 1035, 1081, 1179
BstMAI GTCTC 4 cut(s) 693, 707, 1103, 1366
BstMBI GATC 5 cut(s) 90, 835, 1032, 1078, 1176
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 3 cut(s) 127, 1348, 1358
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 4 cut(s) 125, 1346, 1356, 1503
BstSFI CTRYAG 2 cut(s) 459, 567
BstUI CGCG 1 cut(s) 1041
BstV2I GAAGAC 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 1063
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 815, 1291
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 61, 375
Cac8I GCNNGC 6 cut(s) 101, 269, 326, 434, 846, 1088
CaiI CAGNNNCTG 1 cut(s) 1547
Cfr13I GGNCC 1 cut(s) 1297
CseI GACGC 1 cut(s) 1061
CsiI ACCWGGT 1 cut(s) 1346
Csp6I GTAC 5 cut(s) 694, 800, 918, 1069, 1237
CspCI CAANNNNNGTGG 4 cut(s) 66, 101, 160, 195
CviQI GTAC 5 cut(s) 694, 800, 918, 1069, 1237
DdeI CTNAG 7 cut(s) 37, 480, 588, 750, 966, 1437, 1442
DpnI GATC 5 cut(s) 92, 837, 1034, 1080, 1178
DpnII GATC 5 cut(s) 90, 835, 1032, 1078, 1176
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
EciI GGCGGA 1 cut(s) 808
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 1103, 1366
Eco47I GGWCC 1 cut(s) 1297
EcoRII CCWGG 3 cut(s) 125, 1346, 1356
EcoT22I ATGCAT 1 cut(s) 846
EcoT38I GRGCYC 1 cut(s) 105
FaqI GGGAC 2 cut(s) 80, 1283
FauNDI CATATG 1 cut(s) 840
FbaI TGATCA 2 cut(s) 835, 1078
FokI GGATG 2 cut(s) 802, 1278
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 6 cut(s) 237, 294, 351, 1133, 1367, 1473
GsaI CCCAGC 1 cut(s) 1538
HaeIII GGCC 1 cut(s) 170
HapII CCGG 3 cut(s) 1295, 1487, 1505
HgaI GACGC 1 cut(s) 1061
Hin1I GRCGYC 1 cut(s) 1053
HinfI GANTC 6 cut(s) 980, 1043, 1136, 1243, 1433, 1525
HpaII CCGG 3 cut(s) 1295, 1487, 1505
HphI GGTGA 4 cut(s) 163, 214, 1118, 1385
Hpy166II GTNNAC 3 cut(s) 1071, 1156, 1239
Hpy188I TCNGA 2 cut(s) 732, 1426
Hpy188III TCNNGA 3 cut(s) 1030, 1049, 1247
Hpy8I GTNNAC 3 cut(s) 1071, 1156, 1239
HpyAV CCTTC 5 cut(s) 38, 447, 526, 995, 1025
HpyCH4IV ACGT 2 cut(s) 69, 108
HpyCH4V TGCA 3 cut(s) 419, 844, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 7 cut(s) 37, 480, 588, 750, 966, 1437, 1442
HpySE526I ACGT 2 cut(s) 69, 108
Hsp92I GRCGYC 1 cut(s) 1053
Ksp22I TGATCA 2 cut(s) 835, 1078
Kzo9I GATC 5 cut(s) 90, 835, 1032, 1078, 1176
LmnI GCTCC 8 cut(s) 59, 122, 290, 347, 455, 506, 563, 592
MabI ACCWGGT 1 cut(s) 1346
MaeI CTAG 6 cut(s) 237, 294, 351, 1133, 1367, 1473
MaeII ACGT 2 cut(s) 69, 108
MaeIII GTNAC 2 cut(s) 109, 1049
MalI GATC 5 cut(s) 92, 837, 1034, 1080, 1178
MboI GATC 5 cut(s) 90, 835, 1032, 1078, 1176
MboII GAAGA 6 cut(s) 13, 668, 1018, 1262, 1345, 1492
MhlI GDGCHC 2 cut(s) 105, 831
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 9 cut(s) 11, 115, 132, 172, 189, 283, 300, 607, 1181
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 126, 1045
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 846
MroXI GAANNNNTTC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 843
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 3 cut(s) 1295, 1487, 1505
MspR9I CCNGG 4 cut(s) 127, 1348, 1358, 1505
MvaI CCWGG 3 cut(s) 127, 1348, 1358
MvnI CGCG 1 cut(s) 1041
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 1505
NdeI CATATG 1 cut(s) 840
NdeII GATC 5 cut(s) 90, 835, 1032, 1078, 1176
NlaIV GGNNCC 3 cut(s) 124, 594, 1299
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 109, 1049
NsiI ATGCAT 1 cut(s) 846
NspI RCATGY 1 cut(s) 848
PaeI GCATGC 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 1045
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 6 cut(s) 980, 1043, 1136, 1243, 1433, 1525
PfoI TCCNGGA 1 cut(s) 1503
Psp6I CCWGG 3 cut(s) 125, 1346, 1356
PspFI CCCAGC 1 cut(s) 1534
PspGI CCWGG 3 cut(s) 125, 1346, 1356
PspN4I GGNNCC 3 cut(s) 124, 594, 1299
PspPI GGNCC 1 cut(s) 1297
PstNI CAGNNNCTG 1 cut(s) 1547
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 5 cut(s) 695, 801, 919, 1070, 1238
RsaNI GTAC 5 cut(s) 694, 800, 918, 1069, 1237
RseI CAYNNNNRTG 1 cut(s) 843
Sau3AI GATC 5 cut(s) 90, 835, 1032, 1078, 1176
Sau96I GGNCC 1 cut(s) 1297
ScrFI CCNGG 4 cut(s) 127, 1348, 1358, 1505
SduI GDGCHC 2 cut(s) 105, 831
SexAI ACCWGGT 1 cut(s) 1346
SfcI CTRYAG 2 cut(s) 459, 567
SinI GGWCC 1 cut(s) 1297
SmiMI CAYNNNNRTG 1 cut(s) 843
SphI GCATGC 1 cut(s) 848
Sse9I AATT 9 cut(s) 11, 115, 132, 172, 189, 283, 300, 607, 1181
SsiI CCGC 3 cut(s) 819, 1403, 1453
SspI AATATT 1 cut(s) 1189
SspMI CTAG 6 cut(s) 237, 294, 351, 1133, 1367, 1473
StyD4I CCNGG 4 cut(s) 125, 1346, 1356, 1503
TaiI ACGT 2 cut(s) 72, 111
TaqI TCGA 1 cut(s) 1031
TasI AATT 9 cut(s) 11, 115, 132, 172, 189, 283, 300, 607, 1181
TatI WGTACW 2 cut(s) 917, 1236
TfiI GAWTC 6 cut(s) 980, 1043, 1136, 1243, 1433, 1525
TscAI CASTG 2 cut(s) 61, 375
TseFI GTSAC 2 cut(s) 109, 1049
Tsp45I GTSAC 2 cut(s) 109, 1049
TspDTI ATGAA 3 cut(s) 4, 843, 1157
TspGWI ACGGA 3 cut(s) 360, 711, 750
TspRI CASTG 2 cut(s) 61, 375
VpaK11BI GGWCC 1 cut(s) 1297
XapI RAATTY 1 cut(s) 1181
XceI RCATGY 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 6 cut(s) 237, 294, 351, 1133, 1367, 1473
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.