FvH4_2g10880

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003166
Physical Location & Seq
Forward (+)
9547354 .. 9549626
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10880.t1

Sequence Viewer

Length: 720 bp
ATGAAAATCAGTAAATTAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAACAAAACCAGGCAAAACTTTCACATTATGTTGCCACTTTACGAGAACAGGTAGAACAACTAGCTGAAGAGAGAACACCGGAAGGCTTACCTAGAGTTTCAAAGGCTGTTTTGAGTGACTATTCAGAGAAGATCGAAGCCATTGCTTCGAAATTAGCTGCTCCGTCGCCTAATTTGCAAGAACCCCAGGAGTCCCTTGCAAGAATTTCGGTCAAAACAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCACATTCTCCAGGTCTGAGAAGAAGATTTGTGCCCAACTCAAACATCCAAGATGGAACACGTGAGACACTTGGTGCAGATTCTTCGTCGCCTGTCAAACTTGACGCTGCAGCTCAAGCGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGCTGGCAAGGCAGCTGAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTCGACTCTACAGAGGAGGCTGTTGAAAGGAGCTTGGCGAGCACTGGTCATGCCACTGCACGAGCATCTGATATATACTCAAAGACCTCCAAGACTTCGTGTTTCACATGGCTTTTGATGTTTCTAATGACATGTATATTCATCATGGTGGTACTTTTAATTCGTGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

7.81

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 5 - 239 1.9e-70 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 144, 434
AcvI CACGTG 1 cut(s) 368
AdeI CACNNNGTG 2 cut(s) 380, 526
AfaI GTAC 1 cut(s) 699
AflIII ACRYGT 2 cut(s) 365, 677
AgsI TTSAA 3 cut(s) 159, 434, 572
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 3 cut(s) 66, 243, 316
AluBI AGCT 6 cut(s) 47, 122, 215, 419, 493, 579
AluI AGCT 6 cut(s) 47, 122, 215, 419, 493, 579
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 4 cut(s) 288, 365, 494, 512
ApeKI GCWGC 7 cut(s) 37, 44, 47, 215, 413, 416, 490
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 342
BauI CACGAG 1 cut(s) 606
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 273, 451
Bbv12I GWGCWC 1 cut(s) 590
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 7 cut(s) 24, 34, 56, 202, 400, 428, 502
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 6 cut(s) 182, 216, 246, 280, 372, 406
BciT130I CCWGG 3 cut(s) 68, 245, 318
BcoDI GTCTC 4 cut(s) 288, 365, 494, 512
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 3 cut(s) 119, 150, 504
BfmI CTRYAG 2 cut(s) 414, 555
BisI GCNGC 7 cut(s) 38, 45, 48, 216, 414, 417, 491
BlsI GCNGC 7 cut(s) 39, 46, 49, 217, 415, 418, 492
Bme1390I CCNGG 3 cut(s) 68, 245, 318
BmrFI CCNGG 3 cut(s) 68, 245, 318
BmsI GCATC 1 cut(s) 620
BpiI GAAGAC 2 cut(s) 273, 451
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 49, 405
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 3 cut(s) 68, 245, 318
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 68, 314
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 42, 46, 575
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 7 cut(s) 24, 34, 56, 202, 400, 428, 502
BsgI GTGCAG 2 cut(s) 402, 588
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 235
BsmAI GTCTC 4 cut(s) 288, 365, 494, 512
BsmFI GGGAC 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 342, 590
Bsp143I GATC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 67, 315
BspHI TCATGA 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 418
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 3 cut(s) 68, 245, 318
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 42, 483, 586
BstDEI CTNAG 2 cut(s) 54, 323
BstF5I GGATG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 4 cut(s) 288, 365, 494, 512
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 232, 422, 487, 585
BstNI CCWGG 3 cut(s) 68, 245, 318
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 66, 243, 316
BstSFI CTRYAG 2 cut(s) 414, 555
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 7 cut(s) 24, 34, 56, 202, 400, 428, 502
BstV2I GAAGAC 2 cut(s) 273, 451
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 534, 588, 600
Cac8I GCNNGC 3 cut(s) 42, 483, 586
CciI TCATGA 1 cut(s) 510
CfoI GCGC 1 cut(s) 427
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 698
CviAII CATG 5 cut(s) 511, 596, 654, 678, 691
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 2 cut(s) 54, 323
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraIII CACNNNGTG 2 cut(s) 380, 526
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 144, 434
Eco72I CACGTG 1 cut(s) 368
EcoRII CCWGG 3 cut(s) 66, 243, 316
FaeI CATG 5 cut(s) 514, 599, 657, 681, 694
FaqI GGGAC 1 cut(s) 235
FatI CATG 5 cut(s) 510, 595, 653, 677, 690
Fnu4HI GCNGC 7 cut(s) 38, 45, 48, 216, 414, 417, 491
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 7 cut(s) 38, 45, 48, 216, 414, 417, 491
FspBI CTAG 3 cut(s) 119, 150, 504
GlaI GCGC 1 cut(s) 426
GluI GCNGC 7 cut(s) 38, 45, 48, 216, 414, 417, 491
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 427
Hin1II CATG 5 cut(s) 514, 599, 657, 681, 694
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 4 cut(s) 248, 304, 386, 551
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 25, 308
Hpy188I TCNGA 5 cut(s) 184, 286, 303, 324, 616
Hpy188III TCNNGA 2 cut(s) 452, 511
Hpy8I GTNNAC 2 cut(s) 25, 308
Hpy99I CGWCG 2 cut(s) 226, 397
HpyAV CCTTC 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 7 cut(s) 44, 235, 257, 383, 416, 529, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 422, 487, 585
HpyF3I CTNAG 2 cut(s) 54, 323
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 514, 599, 657, 681, 694
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 3 cut(s) 55, 223, 576
Lsp1109I GCAGC 7 cut(s) 24, 34, 56, 202, 400, 428, 502
LweI GCATC 1 cut(s) 620
MaeI CTAG 3 cut(s) 119, 150, 504
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 2 cut(s) 173, 712
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 7 cut(s) 137, 199, 273, 339, 342, 381, 456
MhlI GDGCHC 2 cut(s) 342, 590
MluCI AATT 5 cut(s) 14, 209, 229, 261, 705
MlyI GAGTC 3 cut(s) 257, 313, 545
MnlI CCTC 8 cut(s) 13, 24, 27, 63, 448, 553, 556, 643
MseI TTAA 2 cut(s) 704, 718
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 2 cut(s) 47, 493
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 68, 245, 318
MvaI CCWGG 3 cut(s) 68, 245, 318
MwoI GCNNNNNNNGC 4 cut(s) 232, 422, 487, 585
NdeII GATC 1 cut(s) 189
NlaIII CATG 5 cut(s) 514, 599, 657, 681, 694
NmuCI GTSAC 2 cut(s) 173, 712
NspI RCATGY 1 cut(s) 681
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 510
PciI ACATGT 1 cut(s) 677
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 7 cut(s) 39, 46, 49, 217, 415, 418, 492
PleI GAGTC 3 cut(s) 256, 312, 545
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 3 cut(s) 256, 312, 545
Ppu21I YACGTR 1 cut(s) 368
PscI ACATGT 1 cut(s) 677
Psp6I CCWGG 3 cut(s) 66, 243, 316
PspCI CACGTG 1 cut(s) 368
PspGI CCWGG 3 cut(s) 66, 243, 316
PstI CTGCAG 1 cut(s) 418
PvuII CAGCTG 2 cut(s) 47, 493
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 2 cut(s) 704, 718
SatI GCNGC 7 cut(s) 38, 45, 48, 216, 414, 417, 491
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 3 cut(s) 257, 313, 545
ScrFI CCNGG 3 cut(s) 68, 245, 318
SduI GDGCHC 2 cut(s) 342, 590
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 2 cut(s) 414, 555
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 28, 420
SmoI CTYRAG 2 cut(s) 28, 420
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 5 cut(s) 14, 209, 229, 261, 705
SspMI CTAG 3 cut(s) 119, 150, 504
StyD4I CCNGG 3 cut(s) 66, 243, 316
TaiI ACGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 192, 206, 549
TaqII GACCGA 1 cut(s) 256
TasI AATT 5 cut(s) 14, 209, 229, 261, 705
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 704, 718
Tru9I TTAA 2 cut(s) 704, 718
TscAI CASTG 3 cut(s) 541, 595, 607
TseFI GTSAC 2 cut(s) 173, 712
TseI GCWGC 7 cut(s) 37, 44, 47, 215, 413, 416, 490
Tsp45I GTSAC 2 cut(s) 173, 712
TspDTI ATGAA 3 cut(s) 17, 483, 676
TspGWI ACGGA 2 cut(s) 210, 514
TspRI CASTG 3 cut(s) 541, 595, 607
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 681
XspI CTAG 3 cut(s) 119, 150, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.