RLG00000035127

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003166
Physical Location & Seq
Reverse (-)
61297090 .. 61297905
816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035127

Sequence Viewer

Length: 816 bp
ATGCTCCTACATCAGTCGCTGGATTCCATTTGCATTGTAACTTGGAAGCCTACTATACTGCCTAAGTTGCTGTTTCGTACTTTACAGGGTTTTGGGATGAAAATCAGTAAAACAGAGGTGAATTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAAGAAAACCAGGCAAAACTTTCGCATTATGTTGCTACTTTACGAGAACAGGTAGAGCAGCTAGCTGAAGAGAGAACACCGGAAGGGTTACCTAGAGTTTCAAAGGCTGTTTTGAGTGACTATTCAGATAAGATCGAAGCCATAGCTTTGAAATTAGCTGCTCCGTTGCCTAATTTGCAAGAACCCCAGGAGTCCCTGGCAAGAATTTCAGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATTTGTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCTTAGTGCAGATTCTTCGGCAGCTGTCAAACTTGATGCTGCAGCTCAAGCTCACATTGAAAAGCATAGGAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTTAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCAAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGACCTCCAAGACTTCGTGTTTCACATGGCTTTTGATGTTTCTAATGACATGTATATTCATCATGGTGGTACTTTTAATTCGTGTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

272

Amino Acids

30.13

Weight (kDa)

8.4

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 37 - 271 2.4e-68 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 121, 357
AcuI CTGAAG 2 cut(s) 240, 530
AdeI CACNNNGTG 1 cut(s) 622
AfaI GTAC 2 cut(s) 79, 795
AfiI CCNNNNNNNGG 1 cut(s) 702
AflIII ACRYGT 1 cut(s) 773
AgsI TTSAA 3 cut(s) 255, 304, 530
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 4 cut(s) 162, 339, 348, 412
AluBI AGCT 9 cut(s) 143, 214, 218, 299, 311, 494, 515, 521, 675
AluI AGCT 9 cut(s) 143, 214, 218, 299, 311, 494, 515, 521, 675
Alw26I GTCTC 5 cut(s) 384, 461, 535, 590, 608
AlwNI CAGNNNCTG 1 cut(s) 19
ApeKI GCWGC 8 cut(s) 133, 140, 143, 211, 311, 491, 509, 512
ApoI RAATTY 2 cut(s) 121, 357
AsuHPI GGTGA 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 438
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 8 cut(s) 120, 130, 152, 223, 298, 496, 503, 524
BccI CCATC 1 cut(s) 449
BcgI CGANNNNNNTGC 4 cut(s) 156, 190, 468, 502
BciT130I CCWGG 4 cut(s) 164, 341, 350, 414
BcoDI GTCTC 5 cut(s) 384, 461, 535, 590, 608
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 3 cut(s) 215, 246, 600
BfmI CTRYAG 3 cut(s) 510, 651, 663
BisI GCNGC 8 cut(s) 134, 141, 144, 212, 312, 492, 510, 513
BlsI GCNGC 8 cut(s) 135, 142, 145, 213, 313, 493, 511, 514
Bme1390I CCNGG 4 cut(s) 164, 341, 350, 414
BmrFI CCNGG 4 cut(s) 164, 341, 350, 414
BmsI GCATC 2 cut(s) 496, 716
BmtI GCTAGC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 339, 348
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 702
Bse1I ACTGG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 4 cut(s) 164, 341, 350, 414
BseDI CCNNGG 2 cut(s) 339, 348
BseGI GGATG 3 cut(s) 102, 447, 707
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 164, 410
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 3 cut(s) 138, 142, 671
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 8 cut(s) 120, 130, 152, 223, 298, 496, 503, 524
BsgI GTGCAG 2 cut(s) 498, 684
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 331, 387
BslI CCNNNNNNNGG 1 cut(s) 702
BsmAI GTCTC 5 cut(s) 384, 461, 535, 590, 608
BsmFI GGGAC 2 cut(s) 331, 387
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 163, 411
BspHI TCATGA 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 514
BspOI GCTAGC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 339, 348
BssMI GATC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 4 cut(s) 164, 341, 350, 414
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 138, 216, 682
BstDEI CTNAG 5 cut(s) 63, 150, 419, 473, 813
BstEII GGTNACC 1 cut(s) 240
BstF5I GGATG 3 cut(s) 102, 447, 707
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 5 cut(s) 384, 461, 535, 590, 608
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 4 cut(s) 67, 328, 518, 681
BstNI CCWGG 4 cut(s) 164, 341, 350, 414
BstNSI RCATGY 1 cut(s) 777
BstPI GGTNACC 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 162, 339, 348, 412
BstSFI CTRYAG 3 cut(s) 510, 651, 663
BstSLI GKGCMC 1 cut(s) 438
BstV1I GCAGC 8 cut(s) 120, 130, 152, 223, 298, 496, 503, 524
BstV2I GAAGAC 1 cut(s) 369
BtsCI GGATG 3 cut(s) 102, 447, 707
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 630, 684, 696
Cac8I GCNNGC 3 cut(s) 138, 216, 682
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 606
Csp6I GTAC 2 cut(s) 78, 794
CviAII CATG 5 cut(s) 607, 692, 750, 774, 787
CviQI GTAC 2 cut(s) 78, 794
DdeI CTNAG 5 cut(s) 63, 150, 419, 473, 813
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
DraIII CACNNNGTG 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 240, 530
Eco91I GGTNACC 1 cut(s) 240
EcoO65I GGTNACC 1 cut(s) 240
EcoRII CCWGG 4 cut(s) 162, 339, 348, 412
FaeI CATG 5 cut(s) 610, 695, 753, 777, 790
FaqI GGGAC 2 cut(s) 331, 387
FatI CATG 5 cut(s) 606, 691, 749, 773, 786
Fnu4HI GCNGC 8 cut(s) 134, 141, 144, 212, 312, 492, 510, 513
FokI GGATG 3 cut(s) 109, 434, 694
Fsp4HI GCNGC 8 cut(s) 134, 141, 144, 212, 312, 492, 510, 513
FspBI CTAG 3 cut(s) 215, 246, 600
GluI GCNGC 8 cut(s) 134, 141, 144, 212, 312, 492, 510, 513
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 1 cut(s) 233
Hin1II CATG 5 cut(s) 610, 695, 753, 777, 790
HinfI GANTC 6 cut(s) 23, 344, 400, 469, 482, 647
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 5 cut(s) 280, 382, 399, 420, 712
Hpy188III TCNNGA 3 cut(s) 464, 548, 607
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 7 cut(s) 33, 140, 331, 479, 512, 625, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 328, 518, 681
HpyF3I CTNAG 5 cut(s) 63, 150, 419, 473, 813
Hsp92II CATG 5 cut(s) 610, 695, 753, 777, 790
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 4 cut(s) 9, 151, 319, 672
Lsp1109I GCAGC 8 cut(s) 120, 130, 152, 223, 298, 496, 503, 524
LweI GCATC 2 cut(s) 496, 716
MaeI CTAG 3 cut(s) 215, 246, 600
MaeIII GTNAC 4 cut(s) 37, 240, 269, 808
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 5 cut(s) 233, 369, 435, 438, 477
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 5 cut(s) 121, 305, 325, 357, 801
MlyI GAGTC 4 cut(s) 353, 409, 463, 641
MnlI CCTC 8 cut(s) 109, 120, 123, 159, 544, 649, 652, 739
MseI TTAA 3 cut(s) 366, 591, 800
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 143, 494
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 4 cut(s) 164, 341, 350, 414
MvaI CCWGG 4 cut(s) 164, 341, 350, 414
MwoI GCNNNNNNNGC 4 cut(s) 67, 328, 518, 681
NdeII GATC 1 cut(s) 285
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 5 cut(s) 610, 695, 753, 777, 790
NmuCI GTSAC 2 cut(s) 269, 808
NspI RCATGY 1 cut(s) 777
PagI TCATGA 1 cut(s) 606
PciI ACATGT 1 cut(s) 773
PfeI GAWTC 2 cut(s) 23, 482
PkrI GCNGC 8 cut(s) 135, 142, 145, 213, 313, 493, 511, 514
PleI GAGTC 4 cut(s) 352, 408, 463, 641
PpsI GAGTC 4 cut(s) 352, 408, 463, 641
PscI ACATGT 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 162, 339, 348, 412
PspEI GGTNACC 1 cut(s) 240
PspGI CCWGG 4 cut(s) 162, 339, 348, 412
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 143, 494
RsaI GTAC 2 cut(s) 79, 795
RsaNI GTAC 2 cut(s) 78, 794
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 3 cut(s) 366, 591, 800
SatI GCNGC 8 cut(s) 134, 141, 144, 212, 312, 492, 510, 513
Sau3AI GATC 1 cut(s) 285
SchI GAGTC 4 cut(s) 353, 409, 463, 641
ScrFI CCNGG 4 cut(s) 164, 341, 350, 414
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 2 cut(s) 496, 716
SfcI CTRYAG 3 cut(s) 510, 651, 663
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 5 cut(s) 121, 305, 325, 357, 801
SspMI CTAG 3 cut(s) 215, 246, 600
StyD4I CCNGG 4 cut(s) 162, 339, 348, 412
TaqI TCGA 1 cut(s) 288
TasI AATT 5 cut(s) 121, 305, 325, 357, 801
TfiI GAWTC 2 cut(s) 23, 482
Tru1I TTAA 3 cut(s) 366, 591, 800
Tru9I TTAA 3 cut(s) 366, 591, 800
TscAI CASTG 3 cut(s) 637, 691, 703
TseFI GTSAC 2 cut(s) 269, 808
TseI GCWGC 8 cut(s) 133, 140, 143, 211, 311, 491, 509, 512
Tsp45I GTSAC 2 cut(s) 269, 808
TspDTI ATGAA 3 cut(s) 113, 579, 772
TspGWI ACGGA 2 cut(s) 306, 610
TspRI CASTG 3 cut(s) 637, 691, 703
XapI RAATTY 2 cut(s) 121, 357
XceI RCATGY 1 cut(s) 777
XspI CTAG 3 cut(s) 215, 246, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.