Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001460.1

Orthogroup ID

OG0003166

Physical Location & Seq

Genomic Coordinates Forward (+)

213614 .. 217157

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001460.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atgctcctacatcagtcgctggattccattagcattgtaatttggaagcctactatactgcctaagttgctgtttcatactttacagggttttgggatgaaaatcagtaaaacagaggtgaatttgaggaggctgcttgcagctgctcctcagcaacaaaaccaggcaaaactttcgcattatgttgctactttacgagaacaggtagagcagctagctgaagagagaacaccagaagggttacctagagtttcaaaggctgttttgagtgactattcagagaagatcgaagccatagctttgaaattatctgctccgttgccaaatttgcaagaaccccaggagtccctggcaagaatttcggttaaagcaaagtcttctgaaacaggagacaatcagagtccccattctccaggtctgagaagaagatttgtgcccaactcaaacatccaagatggaactcgtgagactcttagtgcagattcttcggcacctgtcaaacttgatgctgcagctcaagcacacattgaaaagcataggagacttcaggaggatttgactgatgaaatggttgggttggcaaggcaacttaaagagactagtctcatgatgagccactccgtacaaaacactgaaaaactacttgactctacagaggaggctgtagaaaggagcttggcaagcactggtcatgccactgcacgggcatccgatatatactcaaagacctccaagacttcagtatccttaggtaggaagacggacaggtttcacatggcttttgatgtttctaatggcatgtatattcatcatggaggtcggcttcgtcttctccagatcagtttcctcttctttttttgctgttgcacagaaattaggagagtctttgggaagtgtaaagtgagcagattcgtcaatcaaaggtttcagtcgccttcatctacatcggacccgattcccggcttcaccatcgatttccagattgcccagaaccggcaatcttcgctcgctcagctccgtcgtcggtcttcaaatcgctcaggaccatcgctgtcgatttccagatcgcccagaaccggcgatcgtcgctcgtccagctccgtcgcccaacaaccagggatcgacgctcacccaggacaggcgatcctctctcctcgctcagccgtcagttccctaaaccagaccggcctagtctcttgtcagccgccttcgtctgcctcttacatcagagatcgatctccaatctcttcagttggtcaactcggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Use1

Protein Analysis

422

Amino Acids

46.49

Weight (kDa)

9.88

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54110 AT1G54110 AT1G54110 AT3G55600 AT3G55600
fragaria_vesca	FvH4_2g10880 FvH4_6g47540
malus_domestica	MD08G1104600.v1.1 MD13G1238800.v1.1
prunus_persica	Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.2G148000_v2.0.a1
pyrus_communis	pycom13g21130 pycom16g20480
rosa_chinensis	RchiOBHm_Chr5g0056791 RchiOBHm_Chr6g0268981
rosa_laevigata	RLG00000013891 RLG00000035127
rosa_multiflora	Rmu_sc0001460.1_g000050
rosa_roxburghii	Rroxscaffold_1G00023600 Rroxscaffold_2G00084380 Rroxscaffold_7G00199120
rosa_rugosa	Rorug05G0301900 Rorug06G0043600 Rorug06G0044000
rosa_samantha	Rh5AG372600 Rh5BG383900 Rh5CG407000 Rh5DG397000 Rh6AG164700 Rh6BG169900 Rh6CG163400 Rh6DG155200
rosa_wichuraiana	Rw5G034920 Rw6G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AciI	CCGC	1 cut(s)	1205
AclWI	GGATC	2 cut(s)	1127, 1138
AcsI	RAATTY	3 cut(s)	121, 325, 357
AcuI	CTGAAG	4 cut(s)	240, 530, 723, 1233
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	6 cut(s)	702, 753, 959, 993, 1076, 1138
AgsI	TTSAA	4 cut(s)	255, 304, 530, 1032
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	6 cut(s)	162, 339, 348, 412, 1114, 1132
AluBI	AGCT	8 cut(s)	143, 214, 218, 299, 515, 675, 1015, 1098
AluI	AGCT	8 cut(s)	143, 214, 218, 299, 515, 675, 1015, 1098
Alw26I	GTCTC	6 cut(s)	384, 461, 535, 590, 608, 1198
AlwI	GGATC	2 cut(s)	1127, 1138
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	1186
ApeKI	GCWGC	6 cut(s)	133, 140, 143, 211, 509, 512
ApoI	RAATTY	3 cut(s)	121, 325, 357
AspS9I	GGNCC	2 cut(s)	949, 1043
AsuC2I	CCSGG	1 cut(s)	960
AsuHPI	GGTGA	3 cut(s)	130, 958, 1121
AsuNHI	GCTAGC	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	949, 1043
AxyI	CCTNAGG	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	438
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BanI	GGYRCC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	4 cut(s)	369, 764, 821, 1020
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	6 cut(s)	120, 130, 152, 223, 496, 524
BccI	CCATC	3 cut(s)	449, 977, 1054
BceAI	ACGGC	1 cut(s)	1148
BcgI	CGANNNNNNTGC	6 cut(s)	156, 190, 342, 376, 468, 502
BciT130I	CCWGG	6 cut(s)	164, 341, 350, 414, 1116, 1134
BciVI	GTATCC	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	960
BcoDI	GTCTC	6 cut(s)	384, 461, 535, 590, 608, 1198
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	4 cut(s)	215, 246, 600, 1190
BfmI	CTRYAG	3 cut(s)	510, 651, 663
BfuI	GTATCC	1 cut(s)	754
BisI	GCNGC	7 cut(s)	134, 141, 144, 212, 510, 513, 1205
BlpI	GCTNAGC	2 cut(s)	1011, 1159
BlsI	GCNGC	7 cut(s)	135, 142, 145, 213, 511, 514, 1206
Bme1390I	CCNGG	7 cut(s)	164, 341, 350, 414, 960, 1116, 1134
Bme18I	GGWCC	2 cut(s)	949, 1043
BmgT120I	GGNCC	2 cut(s)	949, 1043
BmiI	GGNNCC	2 cut(s)	492, 951
BmrFI	CCNGG	7 cut(s)	164, 341, 350, 414, 960, 1116, 1134
BmsI	GCATC	2 cut(s)	496, 716
BmtI	GCTAGC	1 cut(s)	218
BpiI	GAAGAC	4 cut(s)	369, 764, 821, 1020
BpmI	CTGGAG	2 cut(s)	396, 818
Bpu10I	CCTNAGC	2 cut(s)	150, 1039
Bpu1102I	GCTNAGC	2 cut(s)	1011, 1159
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	960
Bsa29I	ATCGAT	2 cut(s)	972, 1234
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	339, 348, 1115, 1132
Bsc4I	CCNNNNNNNGG	6 cut(s)	702, 753, 959, 993, 1076, 1138
Bse118I	RCCGGY	3 cut(s)	993, 1076, 1184
Bse1I	ACTGG	1 cut(s)	691
Bse21I	CCTNAGG	1 cut(s)	748
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	6 cut(s)	164, 341, 350, 414, 1116, 1134
BseCI	ATCGAT	2 cut(s)	972, 1234
BseDI	CCNNGG	4 cut(s)	339, 348, 1115, 1132
BseGI	GGATG	3 cut(s)	102, 447, 707
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	6 cut(s)	702, 753, 959, 993, 1076, 1138
BseMII	CTCAG	5 cut(s)	164, 410, 1025, 1053, 1173
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	4 cut(s)	138, 142, 671, 1143
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	6 cut(s)	120, 130, 152, 223, 496, 524
BsgI	GTGCAG	2 cut(s)	498, 684
Bsh1285I	CGRYCG	1 cut(s)	1084
BshFI	GGCC	1 cut(s)	1188
BshNI	GGYRCC	1 cut(s)	490
BshVI	ATCGAT	2 cut(s)	972, 1234
BsiEI	CGRYCG	1 cut(s)	1084
BsiSI	CCGG	4 cut(s)	960, 994, 1077, 1185
BslFI	GGGAC	2 cut(s)	331, 387
BslI	CCNNNNNNNGG	6 cut(s)	702, 753, 959, 993, 1076, 1138
BsmAI	GTCTC	6 cut(s)	384, 461, 535, 590, 608, 1198
BsmFI	GGGAC	2 cut(s)	331, 387
BsnI	GGCC	1 cut(s)	1188
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
Bsp1720I	GCTNAGC	2 cut(s)	1011, 1159
BspACI	CCGC	1 cut(s)	1205
BspANI	GGCC	1 cut(s)	1188
BspCNI	CTCAG	5 cut(s)	163, 411, 1024, 1052, 1172
BspDI	ATCGAT	2 cut(s)	972, 1234
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	492, 951
BspMAI	CTGCAG	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	1127, 1138
BspT107I	GGYRCC	1 cut(s)	490
BsrFI	RCCGGY	3 cut(s)	993, 1076, 1184
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	3 cut(s)	993, 1076, 1184
BssECI	CCNNGG	4 cut(s)	339, 348, 1115, 1132
BssMI	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	6 cut(s)	164, 341, 350, 414, 1116, 1134
Bst6I	CTCTTC	3 cut(s)	216, 854, 1252
BstC8I	GCNNGC	4 cut(s)	138, 216, 682, 1008
BstDEI	CTNAG	8 cut(s)	63, 150, 419, 473, 748, 1011, 1039, 1159
BstEII	GGTNACC	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	3 cut(s)	102, 447, 707
BstKTI	GATC	8 cut(s)	288, 840, 1067, 1084, 1122, 1146, 1234, 1238
BstMAI	GTCTC	6 cut(s)	384, 461, 535, 590, 608, 1198
BstMBI	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
BstMCI	CGRYCG	1 cut(s)	1084
BstMWI	GCNNNNNNNGC	8 cut(s)	67, 328, 518, 681, 1003, 1012, 1086, 1095
BstNI	CCWGG	6 cut(s)	164, 341, 350, 414, 1116, 1134
BstNSI	RCATGY	1 cut(s)	802
BstPI	GGTNACC	1 cut(s)	240
BstSCI	CCNGG	7 cut(s)	162, 339, 348, 412, 958, 1114, 1132
BstSFI	CTRYAG	3 cut(s)	510, 651, 663
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	6 cut(s)	120, 130, 152, 223, 496, 524
BstV2I	GAAGAC	4 cut(s)	369, 764, 821, 1020
Bsu15I	ATCGAT	2 cut(s)	972, 1234
Bsu36I	CCTNAGG	1 cut(s)	748
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	1 cut(s)	1188
BsuTUI	ATCGAT	2 cut(s)	972, 1234
BtgZI	GCGATG	1 cut(s)	1032
BtsCI	GGATG	3 cut(s)	102, 447, 707
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	3 cut(s)	630, 684, 696
Cac8I	GCNNGC	4 cut(s)	138, 216, 682, 1008
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	606
Cfr10I	RCCGGY	3 cut(s)	993, 1076, 1184
Cfr13I	GGNCC	2 cut(s)	949, 1043
ClaI	ATCGAT	2 cut(s)	972, 1234
CseI	GACGC	1 cut(s)	1133
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	5 cut(s)	607, 692, 775, 799, 812
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	8 cut(s)	63, 150, 419, 473, 748, 1011, 1039, 1159
DpnI	GATC	8 cut(s)	287, 839, 1066, 1083, 1121, 1145, 1233, 1237
DpnII	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
Eam1104I	CTCTTC	3 cut(s)	216, 854, 1252
EarI	CTCTTC	3 cut(s)	216, 854, 1252
Eco47I	GGWCC	2 cut(s)	949, 1043
Eco57I	CTGAAG	4 cut(s)	240, 530, 723, 1233
Eco81I	CCTNAGG	1 cut(s)	748
Eco91I	GGTNACC	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	240
EcoRII	CCWGG	6 cut(s)	162, 339, 348, 412, 1114, 1132
FaeI	CATG	5 cut(s)	610, 695, 778, 802, 815
FaqI	GGGAC	2 cut(s)	331, 387
FatI	CATG	5 cut(s)	606, 691, 774, 798, 811
Fnu4HI	GCNGC	7 cut(s)	134, 141, 144, 212, 510, 513, 1205
FokI	GGATG	3 cut(s)	109, 434, 694
Fsp4HI	GCNGC	7 cut(s)	134, 141, 144, 212, 510, 513, 1205
FspBI	CTAG	4 cut(s)	215, 246, 600, 1190
GluI	GCNGC	7 cut(s)	134, 141, 144, 212, 510, 513, 1205
GsuI	CTGGAG	2 cut(s)	396, 818
HaeIII	GGCC	1 cut(s)	1188
HapII	CCGG	4 cut(s)	960, 994, 1077, 1185
HgaI	GACGC	1 cut(s)	1133
Hin1II	CATG	5 cut(s)	610, 695, 778, 802, 815
HincII	GTYRAC	1 cut(s)	1259
HindII	GTYRAC	1 cut(s)	1259
HinfI	GANTC	9 cut(s)	23, 344, 400, 469, 482, 647, 882, 909, 955
HpaII	CCGG	4 cut(s)	960, 994, 1077, 1185
HphI	GGTGA	3 cut(s)	130, 958, 1121
Hpy166II	GTNNAC	1 cut(s)	1259
Hpy188I	TCNGA	7 cut(s)	280, 382, 399, 420, 712, 949, 1229
Hpy188III	TCNNGA	7 cut(s)	464, 548, 607, 835, 979, 1041, 1062
Hpy8I	GTNNAC	1 cut(s)	1259
Hpy99I	CGWCG	5 cut(s)	1023, 1026, 1089, 1106, 1127
HpyAV	CCTTC	3 cut(s)	230, 945, 1218
HpyCH4V	TGCA	6 cut(s)	140, 331, 479, 512, 701, 867
HpyF10VI	GCNNNNNNNGC	8 cut(s)	67, 328, 518, 681, 1003, 1012, 1086, 1095
HpyF3I	CTNAG	8 cut(s)	63, 150, 419, 473, 748, 1011, 1039, 1159
Hsp92II	CATG	5 cut(s)	610, 695, 778, 802, 815
Kzo9I	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
LmnI	GCTCC	6 cut(s)	9, 151, 319, 672, 1020, 1103
Lsp1109I	GCAGC	6 cut(s)	120, 130, 152, 223, 496, 524
LweI	GCATC	2 cut(s)	496, 716
MaeI	CTAG	4 cut(s)	215, 246, 600, 1190
MaeIII	GTNAC	2 cut(s)	240, 269
MalI	GATC	8 cut(s)	287, 839, 1066, 1083, 1121, 1145, 1233, 1237
MboI	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	6 cut(s)	39, 121, 305, 325, 357, 873
MlyI	GAGTC	5 cut(s)	353, 409, 463, 641, 891
MseI	TTAA	3 cut(s)	366, 591, 1267
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	960, 994, 1077, 1185
MspR9I	CCNGG	7 cut(s)	164, 341, 350, 414, 960, 1116, 1134
MvaI	CCWGG	6 cut(s)	164, 341, 350, 414, 1116, 1134
MwoI	GCNNNNNNNGC	8 cut(s)	67, 328, 518, 681, 1003, 1012, 1086, 1095
NciI	CCSGG	1 cut(s)	960
NdeII	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	610, 695, 778, 802, 815
NlaIV	GGNNCC	2 cut(s)	492, 951
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	802
PagI	TCATGA	1 cut(s)	606
PfeI	GAWTC	4 cut(s)	23, 482, 909, 955
PkrI	GCNGC	7 cut(s)	135, 142, 145, 213, 511, 514, 1206
Ple19I	CGATCG	1 cut(s)	1084
PleI	GAGTC	5 cut(s)	352, 408, 463, 641, 890
PpsI	GAGTC	5 cut(s)	352, 408, 463, 641, 890
Psp6I	CCWGG	6 cut(s)	162, 339, 348, 412, 1114, 1132
PspEI	GGTNACC	1 cut(s)	240
PspGI	CCWGG	6 cut(s)	162, 339, 348, 412, 1114, 1132
PspN4I	GGNNCC	2 cut(s)	492, 951
PspPI	GGNCC	2 cut(s)	949, 1043
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	1084
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	366, 591, 1267
SatI	GCNGC	7 cut(s)	134, 141, 144, 212, 510, 513, 1205
Sau3AI	GATC	8 cut(s)	285, 837, 1064, 1081, 1119, 1143, 1231, 1235
Sau96I	GGNCC	2 cut(s)	949, 1043
SchI	GAGTC	5 cut(s)	353, 409, 463, 641, 891
ScrFI	CCNGG	7 cut(s)	164, 341, 350, 414, 960, 1116, 1134
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	2 cut(s)	496, 716
SfcI	CTRYAG	3 cut(s)	510, 651, 663
SinI	GGWCC	2 cut(s)	949, 1043
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	6 cut(s)	39, 121, 305, 325, 357, 873
SsiI	CCGC	1 cut(s)	1205
SspMI	CTAG	4 cut(s)	215, 246, 600, 1190
StyD4I	CCNGG	7 cut(s)	162, 339, 348, 412, 958, 1114, 1132
TaqI	TCGA	5 cut(s)	288, 972, 1055, 1122, 1234
TaqII	GACCGA	1 cut(s)	1014
TasI	AATT	6 cut(s)	39, 121, 305, 325, 357, 873
TauI	GCSGC	1 cut(s)	1207
TfiI	GAWTC	4 cut(s)	23, 482, 909, 955
Tru1I	TTAA	3 cut(s)	366, 591, 1267
Tru9I	TTAA	3 cut(s)	366, 591, 1267
TscAI	CASTG	3 cut(s)	637, 691, 703
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	6 cut(s)	133, 140, 143, 211, 509, 512
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	65, 113, 579, 797, 927
TspGWI	ACGGA	5 cut(s)	306, 610, 776, 1007, 1090
TspRI	CASTG	3 cut(s)	637, 691, 703
VpaK11BI	GGWCC	2 cut(s)	949, 1043
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	3 cut(s)	121, 325, 357
XceI	RCATGY	1 cut(s)	802
XspI	CTAG	4 cut(s)	215, 246, 600, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.