Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003166

Physical Location & Seq

Genomic Coordinates Forward (+)

20400439 .. 20403232

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G148000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGCATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAACAAAACCAGTCAAAACTTGTACATTATGTTGCTACTTTACGAGAACAGGTAGAACAACTAGCTGAGGAGAGAACTCCAGAAGGCTTACCAAGAGTTTCAAAGGCTGTTTTGAGCGACTATTCAGAGAAGATCGAAGCAATTGCTTCCAAATTAGCTGCTCCGCCGCCTGATATTCAAGCACCCAAGGAGCCCCTTGCAAGAATTTCTGTCAAAGCAAACTCTTCTGATACAGGAGACAATCAGATTCCCCCTTCTCCAGGTCTGAGAAGGAGATTTGGGCTTACCTCAAATTCCGAAGATGGAACTCGTGAGATTCTTAGTGTTGATTCTTCAGCGCCTGTCAAACTGGATGCTGCAGCCCAAGCACACATTGAAAAACATAGAAAGCTTCAAGAGGATTTGACTGATGAAATGGTTGGATTGGCAAGGCAACTCAAAGAGAGTAGTCTCATGATGAATCACTCGCTGCAAGACACTGAAAAAATACTTGATTCTACAGAGAAGGCTGTTGAAAGTAGCTTGGCAAGCACTGGCCATGCCAATACACGGGCGACCAATATATACTCGAAGACGTCCAAAACTACATGTTTCACATGGCTTGTAATGTTTGTAATGACATGTGTATTCATCATGGTTGTACTTTTAATTCGTGTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Use1

Protein Analysis

240

Amino Acids

26.31

Weight (kDa)

6.98

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54110 AT1G54110 AT1G54110 AT3G55600 AT3G55600
fragaria_vesca	FvH4_2g10880 FvH4_6g47540
malus_domestica	MD08G1104600.v1.1 MD13G1238800.v1.1
prunus_persica	Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.2G148000_v2.0.a1
pyrus_communis	pycom13g21130 pycom16g20480
rosa_chinensis	RchiOBHm_Chr5g0056791 RchiOBHm_Chr6g0268981
rosa_laevigata	RLG00000013891 RLG00000035127
rosa_multiflora	Rmu_sc0001460.1_g000050
rosa_roxburghii	Rroxscaffold_1G00023600 Rroxscaffold_2G00084380 Rroxscaffold_7G00199120
rosa_rugosa	Rorug05G0301900 Rorug06G0043600 Rorug06G0044000
rosa_samantha	Rh5AG372600 Rh5BG383900 Rh5CG407000 Rh5DG397000 Rh6AG164700 Rh6BG169900 Rh6CG163400 Rh6DG155200
rosa_wichuraiana	Rw5G034920 Rw6G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	635
AciI	CCGC	2 cut(s)	221, 224
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	261, 349
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	2 cut(s)	81, 699
AfiI	CCNNNNNNNGG	2 cut(s)	317, 606
AflIII	ACRYGT	2 cut(s)	644, 677
AgsI	TTSAA	5 cut(s)	159, 236, 434, 452, 572
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	47, 122, 215, 448, 579
AluI	AGCT	5 cut(s)	47, 122, 215, 448, 579
Alw26I	GTCTC	2 cut(s)	288, 512
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	7 cut(s)	37, 44, 47, 215, 413, 416, 526
ApoI	RAATTY	2 cut(s)	261, 349
AspLEI	GCGC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	635
BbvCI	CCTCAGC	2 cut(s)	54, 123
BbvI	GCAGC	7 cut(s)	24, 34, 56, 202, 400, 428, 513
BccI	CCATC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	288, 512
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	414, 555
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	8 cut(s)	38, 45, 48, 216, 224, 414, 417, 527
BlsI	GCNGC	8 cut(s)	39, 46, 49, 217, 225, 415, 418, 528
Bme1390I	CCNGG	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	15, 400
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	2 cut(s)	120, 300
Bpu10I	CCTNAGC	2 cut(s)	54, 123
BpuEI	CTTGAG	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 606
Bse1I	ACTGG	3 cut(s)	67, 411, 595
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	317, 606
BseMII	CTCAG	3 cut(s)	68, 114, 314
BseNI	ACTGG	3 cut(s)	67, 411, 595
BseRI	GAGGAG	3 cut(s)	42, 46, 140
BseXI	GCAGC	7 cut(s)	24, 34, 56, 202, 400, 428, 513
BshFI	GGCC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	317, 606
BsmAI	GTCTC	2 cut(s)	288, 512
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	221, 224
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	3 cut(s)	67, 115, 315
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	79
BsrI	ACTGG	3 cut(s)	67, 411, 595
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	632
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	42, 586
BstDEI	CTNAG	4 cut(s)	54, 123, 323, 377
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	288, 512
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 585
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	648, 681
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	414, 555
BstV1I	GCAGC	7 cut(s)	24, 34, 56, 202, 400, 428, 513
BstV2I	GAAGAC	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	534, 588
Cac8I	GCNNGC	2 cut(s)	42, 586
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	80, 698
CviAII	CATG	6 cut(s)	511, 596, 645, 654, 678, 691
CviQI	GTAC	2 cut(s)	80, 698
DdeI	CTNAG	4 cut(s)	54, 123, 323, 377
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	6 cut(s)	514, 599, 648, 657, 681, 694
FatI	CATG	6 cut(s)	510, 595, 644, 653, 677, 690
Fnu4HI	GCNGC	8 cut(s)	38, 45, 48, 216, 224, 414, 417, 527
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	8 cut(s)	38, 45, 48, 216, 224, 414, 417, 527
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	8 cut(s)	38, 45, 48, 216, 224, 414, 417, 527
GsuI	CTGGAG	2 cut(s)	120, 300
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	6 cut(s)	514, 599, 648, 657, 681, 694
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	304, 373, 386, 517, 551
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	184, 286, 303, 324, 355
Hpy188III	TCNNGA	4 cut(s)	137, 368, 452, 511
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	4 cut(s)	134, 321, 321, 556
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	4 cut(s)	44, 257, 416, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 585
HpyF3I	CTNAG	4 cut(s)	54, 123, 323, 377
HpySE526I	ACGT	1 cut(s)	632
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	6 cut(s)	514, 599, 648, 657, 681, 694
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	55, 223, 247
Lsp1109I	GCAGC	7 cut(s)	24, 34, 56, 202, 400, 428, 513
LweI	GCATC	2 cut(s)	15, 400
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	5 cut(s)	199, 273, 368, 381, 640
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	5 cut(s)	198, 209, 261, 349, 705
MluNI	TGGCCA	1 cut(s)	594
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	13, 24, 27, 63, 118, 355, 448
Mox20I	TGGCCA	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	2 cut(s)	704, 718
Msp20I	TGGCCA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	422, 585
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	6 cut(s)	514, 599, 648, 657, 681, 694
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	2 cut(s)	648, 681
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	2 cut(s)	644, 677
PfeI	GAWTC	5 cut(s)	304, 373, 386, 517, 551
PkrI	GCNGC	8 cut(s)	39, 46, 49, 217, 225, 415, 418, 528
PscI	ACATGT	2 cut(s)	644, 677
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	81, 699
RsaNI	GTAC	2 cut(s)	80, 698
SaqAI	TTAA	2 cut(s)	704, 718
SatI	GCNGC	8 cut(s)	38, 45, 48, 216, 224, 414, 417, 527
Sau3AI	GATC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	15, 400
SfcI	CTRYAG	2 cut(s)	414, 555
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	198, 209, 261, 349, 705
SsiI	CCGC	2 cut(s)	221, 224
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	2 cut(s)	192, 626
TasI	AATT	5 cut(s)	198, 209, 261, 349, 705
TatI	WGTACW	2 cut(s)	79, 697
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	304, 373, 386, 517, 551
Tru1I	TTAA	2 cut(s)	704, 718
Tru9I	TTAA	2 cut(s)	704, 718
TscAI	CASTG	2 cut(s)	541, 595
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	7 cut(s)	37, 44, 47, 215, 413, 416, 526
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	3 cut(s)	483, 530, 676
TspRI	CASTG	2 cut(s)	541, 595
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	261, 349
XceI	RCATGY	2 cut(s)	648, 681
XspI	CTAG	1 cut(s)	119
ZraI	GACGTC	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.