Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003166

Physical Location & Seq

Genomic Coordinates Forward (+)

5039171 .. 5044492

Gene Structure 5322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATAATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAACAAAACCAGGCAAAACTTGTACATTATATTGCTACTTTACGAGAACAGCTAGAACAACTAGCTGAAGAGAGAACTCCAGAAGGCTTACCAAGAGTTTCAAAGGCTGTCTTGAGTGATTATTCAGAGAAGATTGAAGTCATTGCTTCCAAATTAGCTGCTCCACCGCCTGATATTCAAGCACCCCCGGAGTCTCTTGCAAGAATTTCTGTCAAAGCAAACTCTTCTGATACAGGAGACAATCAGTTTCCCCTTTCTCCAGGCCTGAGAAGGAGATTCGTGCCTACCTCAAACGAAGATGGAACTCGTGAGACTCTTAGTGTTGATTCTTCAGCACCTGTCAAACTGGATGCTGCAGCCCAAGCACACATTGAAAAGCATAGAAAGCTTCAAGAGGATTTGACCGATGAAATGGTGGGATTGGCAAGGCAACTTAAAGAAAGTAGTCTCATGATGAGTCACTCCCTGAAAGACACTGAAAAGATACTTGATTCTACAGAGAAGGCTGTTGAAAGTAGCTTGGCAAGCACTGGCCATGCCACTACACGGGCGGCGGATATATACTCGAAGACGTCCAAAACTACGTGTTTCACATGGCTTGTAATGTTTGTAATGACATGTGTATTCGTCATGGTTGTACTTTTAATTCGTGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Use1

Protein Analysis

239

Amino Acids

26.23

Weight (kDa)

6.54

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54110 AT1G54110 AT1G54110 AT3G55600 AT3G55600
fragaria_vesca	FvH4_2g10880 FvH4_6g47540
malus_domestica	MD08G1104600.v1.1 MD13G1238800.v1.1
prunus_persica	Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.1G071200_v2.0.a1 Prupe.2G148000_v2.0.a1
pyrus_communis	pycom13g21130 pycom16g20480
rosa_chinensis	RchiOBHm_Chr5g0056791 RchiOBHm_Chr6g0268981
rosa_laevigata	RLG00000013891 RLG00000035127
rosa_multiflora	Rmu_sc0001460.1_g000050
rosa_roxburghii	Rroxscaffold_1G00023600 Rroxscaffold_2G00084380 Rroxscaffold_7G00199120
rosa_rugosa	Rorug05G0301900 Rorug06G0043600 Rorug06G0044000
rosa_samantha	Rh5AG372600 Rh5BG383900 Rh5CG407000 Rh5DG397000 Rh6AG164700 Rh6BG169900 Rh6CG163400 Rh6DG155200
rosa_wichuraiana	Rw5G034920 Rw6G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	632
AciI	CCGC	3 cut(s)	224, 608, 611
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	144, 372
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	2 cut(s)	81, 696
AfiI	CCNNNNNNNGG	1 cut(s)	603
AflIII	ACRYGT	2 cut(s)	641, 674
AgsI	TTSAA	6 cut(s)	159, 194, 236, 431, 449, 569
AjnI	CCWGG	2 cut(s)	66, 316
AluBI	AGCT	6 cut(s)	47, 109, 122, 215, 445, 576
AluI	AGCT	6 cut(s)	47, 109, 122, 215, 445, 576
Alw26I	GTCTC	4 cut(s)	255, 288, 362, 509
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	319, 589
ApeKI	GCWGC	6 cut(s)	37, 44, 47, 215, 410, 413
ApoI	RAATTY	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	591
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	632
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	24, 34, 56, 202, 397, 425
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	68, 318
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	4 cut(s)	255, 288, 362, 509
BfaI	CTAG	2 cut(s)	110, 119
BfmI	CTRYAG	2 cut(s)	411, 552
BisI	GCNGC	7 cut(s)	38, 45, 48, 216, 411, 414, 609
BlsI	GCNGC	7 cut(s)	39, 46, 49, 217, 412, 415, 610
Bme1390I	CCNGG	3 cut(s)	68, 245, 318
BmrFI	CCNGG	3 cut(s)	68, 245, 318
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	2 cut(s)	120, 300
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	49, 190
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse1I	ACTGG	2 cut(s)	408, 592
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	68, 318
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	68, 314
BseNI	ACTGG	2 cut(s)	408, 592
BseRI	GAGGAG	2 cut(s)	42, 46
BseXI	GCAGC	6 cut(s)	24, 34, 56, 202, 397, 425
BshFI	GGCC	2 cut(s)	321, 591
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	4 cut(s)	255, 288, 362, 509
BsnI	GGCC	2 cut(s)	321, 591
Bsp1407I	TGTACA	1 cut(s)	79
BspACI	CCGC	3 cut(s)	224, 608, 611
BspANI	GGCC	2 cut(s)	321, 591
BspCNI	CTCAG	2 cut(s)	67, 315
BspHI	TCATGA	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	408, 592
BssECI	CCNNGG	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	629
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	68, 318
Bst6I	CTCTTC	2 cut(s)	120, 286
BstACI	GRCGYC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	42, 583
BstDEI	CTNAG	3 cut(s)	54, 323, 374
BstF5I	GGATG	1 cut(s)	412
BstMAI	GTCTC	4 cut(s)	255, 288, 362, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 442, 582
BstNI	CCWGG	2 cut(s)	68, 318
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	3 cut(s)	66, 243, 316
BstSFI	CTRYAG	2 cut(s)	411, 552
BstV1I	GCAGC	6 cut(s)	24, 34, 56, 202, 397, 425
BstV2I	GAAGAC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	321, 591
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	531, 585
Cac8I	GCNNGC	2 cut(s)	42, 583
CaiI	CAGNNNCTG	1 cut(s)	395
CciI	TCATGA	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	80, 695
CviAII	CATG	5 cut(s)	508, 593, 651, 675, 688
CviQI	GTAC	2 cut(s)	80, 695
DdeI	CTNAG	3 cut(s)	54, 323, 374
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	2 cut(s)	120, 286
EarI	CTCTTC	2 cut(s)	120, 286
EciI	GGCGGA	1 cut(s)	626
Eco147I	AGGCCT	1 cut(s)	321
Eco57I	CTGAAG	2 cut(s)	144, 372
EcoRII	CCWGG	2 cut(s)	66, 316
FaeI	CATG	5 cut(s)	511, 596, 654, 678, 691
FaiI	YATR	9 cut(s)	87, 438, 509, 594, 617, 619, 652, 676, 689
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	5 cut(s)	507, 592, 650, 674, 687
Fnu4HI	GCNGC	7 cut(s)	38, 45, 48, 216, 411, 414, 609
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	7 cut(s)	38, 45, 48, 216, 411, 414, 609
FspBI	CTAG	2 cut(s)	110, 119
GluI	GCNGC	7 cut(s)	38, 45, 48, 216, 411, 414, 609
GsuI	CTGGAG	2 cut(s)	120, 300
HaeIII	GGCC	2 cut(s)	321, 591
HapII	CCGG	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	5 cut(s)	511, 596, 654, 678, 691
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	6 cut(s)	248, 333, 370, 383, 514, 548
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	184, 286
Hpy188III	TCNNGA	5 cut(s)	137, 169, 365, 449, 508
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	134, 321, 553
HpyCH4IV	ACGT	2 cut(s)	629, 641
HpyCH4V	TGCA	3 cut(s)	44, 257, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 442, 582
HpyF3I	CTNAG	3 cut(s)	54, 323, 374
HpySE526I	ACGT	2 cut(s)	629, 641
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	5 cut(s)	511, 596, 654, 678, 691
LmnI	GCTCC	2 cut(s)	55, 223
Lsp1109I	GCAGC	6 cut(s)	24, 34, 56, 202, 397, 425
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	110, 119
MaeII	ACGT	2 cut(s)	629, 641
MaeIII	GTNAC	2 cut(s)	515, 709
MboII	GAAGA	6 cut(s)	137, 199, 273, 365, 378, 637
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	3 cut(s)	209, 261, 702
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	3 cut(s)	257, 364, 523
MnlI	CCTC	6 cut(s)	13, 24, 27, 63, 355, 445
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	492, 701
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	3 cut(s)	68, 245, 318
MvaI	CCWGG	2 cut(s)	68, 318
MwoI	GCNNNNNNNGC	3 cut(s)	419, 442, 582
NciI	CCSGG	1 cut(s)	245
NlaIII	CATG	5 cut(s)	511, 596, 654, 678, 691
NmuCI	GTSAC	2 cut(s)	515, 709
NspI	RCATGY	1 cut(s)	678
PagI	TCATGA	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	321
PciI	ACATGT	1 cut(s)	674
PfeI	GAWTC	3 cut(s)	333, 383, 548
PkrI	GCNGC	7 cut(s)	39, 46, 49, 217, 412, 415, 610
PleI	GAGTC	3 cut(s)	256, 364, 522
PpsI	GAGTC	3 cut(s)	256, 364, 522
Ppu21I	YACGTR	1 cut(s)	642
PscI	ACATGT	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	66, 316
PspGI	CCWGG	2 cut(s)	66, 316
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	81, 696
RsaNI	GTAC	2 cut(s)	80, 695
SaqAI	TTAA	2 cut(s)	492, 701
SatI	GCNGC	7 cut(s)	38, 45, 48, 216, 411, 414, 609
SchI	GAGTC	3 cut(s)	257, 364, 523
ScrFI	CCNGG	3 cut(s)	68, 245, 318
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	411, 552
SmlI	CTYRAG	2 cut(s)	28, 169
SmoI	CTYRAG	2 cut(s)	28, 169
Sse9I	AATT	3 cut(s)	209, 261, 702
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	224, 608, 611
SspMI	CTAG	2 cut(s)	110, 119
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	66, 243, 316
TaiI	ACGT	2 cut(s)	632, 644
TaqI	TCGA	1 cut(s)	623
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	209, 261, 702
TatI	WGTACW	2 cut(s)	79, 694
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	3 cut(s)	333, 383, 548
Tru1I	TTAA	2 cut(s)	492, 701
Tru9I	TTAA	2 cut(s)	492, 701
TscAI	CASTG	2 cut(s)	538, 592
TseFI	GTSAC	2 cut(s)	515, 709
TseI	GCWGC	6 cut(s)	37, 44, 47, 215, 410, 413
Tsp45I	GTSAC	2 cut(s)	515, 709
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	538, 592
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	678
XspI	CTAG	2 cut(s)	110, 119
ZraI	GACGTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.