Rorug05G0301900

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003166
Physical Location & Seq
Forward (+)
35026454 .. 35027250
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0301900.1

Sequence Viewer

Length: 669 bp
ATGATTTTCGTTGGAAATGGTCAAGCATTTCCAACGGTTGGTCGGAAGAAAATTATTTCCGACCAAGGCATTTCCGACGACGACTTTTCGTCGAAAAAAGAACTTCAATCTCTAACTCCGTTTTGTGAAACCCATAAACATACACAAATCAAATACACTTCTTCACGAGAATGGGAACCTTGCGGGGCAACGCTTTTTTTTGTGCATCTCTTTCTTTTTCTATTACTCAATGTCACCCACCTTTTCAGTTTTGTGCAAACCCTTTGCCATGTTGATGAGGGCTCTGCCTTGTTGCAATTCAAGGAAACCTTTACTGTAATACACAATTCTGCGCATCCAAAGTTTGCATCTTGGACAGCACAAGGACAGATGAATCTTAGTTTTTGCTCATGGAGTGGTGTCGAGTGTGACGAGTACTTTGGCTATGTCATTGGCCTTGACCTAAGAAGCAGTTATCTTTATGCTTCTATCAATTCTAGCAGTAGCCTTTTTCTACTTGTTCACTTGCTAAGGCTGGATCTTTCCGATAATGACTTCAGTCTTTCTGAAATACCATTGAGATTAGGCCATGATCTTACCAGCCTAAACCTATCTCAACCTTTCATTCTGCTCATTTCATGGGGAGTTCTCTGTTGGCATCTTTCATCTACCAAACTTGCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

222

Amino Acids

24.98

Weight (kDa)

5.88

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 92 - 137 1.8e-08 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 650
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 520
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 107, 301
AhdI GACNNNNNGTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 525
AoxI GGCC 2 cut(s) 433, 565
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 226
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 1 cut(s) 165
BfaI CTAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 650
BmcAI AGTACT 1 cut(s) 416
BmeRI GACNNNNNGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 4 cut(s) 214, 343, 356, 646
BoxI GACNNNNGTC 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 38
BshFI GGCC 2 cut(s) 435, 567
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 435, 567
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 517, 571
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 435, 567
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 2 cut(s) 517, 571
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 37, 316
BstDEI CTNAG 3 cut(s) 377, 443, 509
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 520, 574
BstMBI GATC 2 cut(s) 517, 571
BstPAI GACNNNNGTC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 2 cut(s) 435, 567
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 650
CfoI GCGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 415
CviAII CATG 4 cut(s) 269, 390, 569, 618
CviJI RGCY 7 cut(s) 282, 423, 435, 486, 514, 567, 582
CviKI_1 RGCY 7 cut(s) 282, 423, 435, 486, 514, 567, 582
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 377, 443, 509
DpnI GATC 2 cut(s) 519, 573
DpnII GATC 2 cut(s) 517, 571
DriI GACNNNNNGTC 1 cut(s) 88
Eam1105I GACNNNNNGTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 272, 393, 572, 621
FaiI YATR 8 cut(s) 135, 141, 270, 391, 426, 462, 570, 619
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 4 cut(s) 268, 389, 568, 617
FauI CCCGC 1 cut(s) 176
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 284
FspBI CTAG 1 cut(s) 477
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 435, 567
HhaI GCGC 1 cut(s) 334
Hin1II CATG 4 cut(s) 272, 393, 572, 621
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 1 cut(s) 373
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 5 cut(s) 45, 61, 76, 526, 547
Hpy188III TCNNGA 2 cut(s) 165, 666
Hpy8I GTNNAC 1 cut(s) 502
Hpy99I CGWCG 3 cut(s) 80, 83, 94
HpyCH4III ACNGT 2 cut(s) 37, 316
HpyCH4V TGCA 5 cut(s) 205, 256, 295, 347, 659
HpyF3I CTNAG 3 cut(s) 377, 443, 509
Hsp92II CATG 4 cut(s) 272, 393, 572, 621
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 517, 571
LpnPI CCDG 3 cut(s) 500, 592, 645
LweI GCATC 4 cut(s) 214, 343, 356, 646
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 232, 407
MalI GATC 2 cut(s) 519, 573
MboI GATC 2 cut(s) 517, 571
MboII GAAGA 2 cut(s) 58, 153
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 4 cut(s) 51, 296, 325, 472
MmeI TCCRAC 4 cut(s) 23, 56, 84, 99
MnlI CCTC 1 cut(s) 271
MslI CAYNNNNRTG 2 cut(s) 169, 273
NdeII GATC 2 cut(s) 517, 571
NlaIII CATG 4 cut(s) 272, 393, 572, 621
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 232, 407
NsbI TGCGCA 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 38
PshAI GACNNNNGTC 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 169, 273
Sau3AI GATC 2 cut(s) 517, 571
ScaI AGTACT 1 cut(s) 416
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 181, 243, 311, 444, 591, 601, 664
SfaNI GCATC 4 cut(s) 214, 343, 356, 646
SmiMI CAYNNNNRTG 2 cut(s) 169, 273
Sse9I AATT 4 cut(s) 51, 296, 325, 472
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 37, 316
TaqI TCGA 2 cut(s) 92, 402
TasI AATT 4 cut(s) 51, 296, 325, 472
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 1 cut(s) 373
TseFI GTSAC 2 cut(s) 232, 407
Tsp45I GTSAC 2 cut(s) 232, 407
TspDTI ATGAA 4 cut(s) 386, 592, 606, 633
TspGWI ACGGA 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 38
XspI CTAG 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.