Rorug06G0044000

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003166
Physical Location & Seq
Forward (+)
5597141 .. 5598513
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0044000.1

Sequence Viewer

Length: 645 bp
ATGTCGGATGAGGACTCGATGATGGCAGGGCTGCTCAAGTCTATCTGGGTTCAGATTCGATCGAGTGCACCTTGGCTTCTGTCTCTGGGAACATCGGCTTGGATTTGTGCGTTGCCTCGGTGGCGGCGGCTGTGCAGTGGCAGTGCTGAGCTAGAAGCAATTGTTGTAAGATGGCAACGATACCTTGGCATGAAGGCCACAGATCATAGGTTGTTTCAGCTCAATGTCTTTGATTGGCGTGACTTTTGTAAAAGAACTCTTGATTGGTCGGACCCCGAAACTCAAAAGAAGAGTGGGAGGATAAGGTTTGTGGTCGAGAGGAAGTTGAATGATCGTTGGAAGACATTTAAGGCGAAACTCCAGAAAGTATGGTATACCCCAAATGTTGGCACTGAAGAGAGTTTTAAATGCAAAGATGGGAGGTGGTGTTCTATTGTGAACAAGCAGAGTTGGGCAAAGCGTAGGATGATGCACACAACTGACACAAAGACATTTGCAGAGAAAAAAGAAAATGGAGGTGTAAACCCAGACCGTTGCACAATGTTTGAGCTTACCCATGTTCACGACTCTGAAAAACCTGATGAACCAAATTCTAGCCAAGCTATTGTAAGCATCAAATATGACATATTATTTTCAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

214

Amino Acids

25.05

Weight (kDa)

9.42

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AccI GTMKAC 1 cut(s) 374
AciI CCGC 2 cut(s) 124, 127
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 328, 636
AjuI GAANNNNNNNTTGG 4 cut(s) 82, 114, 247, 279
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 4 cut(s) 151, 220, 550, 602
AluI AGCT 4 cut(s) 151, 220, 550, 602
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 66
AoxI GGCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 271
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 16, 165, 410
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 152, 594
BglI GCCNNNNNGGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 32, 125, 128
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 3 cut(s) 33, 126, 129
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 2 cut(s) 459, 621
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 71, 116, 184
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 386
BseDI CCNNGG 3 cut(s) 71, 116, 184
BseGI GGATG 2 cut(s) 13, 471
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 59, 202, 331
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 2 cut(s) 124, 127
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 71, 116, 184
BssMI GATC 3 cut(s) 59, 202, 331
BssNAI GTATAC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 71, 184
Bst1107I GTATAC 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 284, 390
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 13, 471
BstKTI GATC 3 cut(s) 62, 205, 334
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 59, 202, 331
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 347
BstZ17I GTATAC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 13, 471
BtsI GCAGTG 2 cut(s) 142, 148
BtsIMutI CAGTG 3 cut(s) 142, 148, 390
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 2 cut(s) 190, 557
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 61, 204, 333
DpnII GATC 3 cut(s) 59, 202, 331
DraI TTTAAA 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 284, 390
EarI CTCTTC 2 cut(s) 284, 390
Eco130I CCWWGG 2 cut(s) 71, 184
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 71, 184
ErhI CCWWGG 2 cut(s) 71, 184
FaeI CATG 2 cut(s) 193, 560
FaiI YATR 7 cut(s) 191, 207, 370, 375, 558, 621, 626
FatI CATG 2 cut(s) 189, 556
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 3 cut(s) 32, 125, 128
FokI GGATG 2 cut(s) 20, 478
Fsp4HI GCNGC 3 cut(s) 32, 125, 128
FspBI CTAG 2 cut(s) 152, 594
GluI GCNGC 3 cut(s) 32, 125, 128
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 193, 560
HinfI GANTC 3 cut(s) 14, 55, 566
Hpy166II GTNNAC 5 cut(s) 68, 375, 439, 523, 562
Hpy188I TCNGA 4 cut(s) 7, 54, 271, 571
Hpy188III TCNNGA 4 cut(s) 260, 316, 361, 563
Hpy8I GTNNAC 5 cut(s) 68, 375, 439, 523, 562
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 6 cut(s) 68, 135, 411, 472, 497, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 193, 560
Kzo9I GATC 3 cut(s) 59, 202, 331
LpnPI CCDG 6 cut(s) 12, 31, 71, 374, 540, 591
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 459, 621
MaeI CTAG 2 cut(s) 152, 594
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 61, 204, 333
MboI GATC 3 cut(s) 59, 202, 331
MboII GAAGA 3 cut(s) 301, 352, 407
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 159, 589
MlyI GAGTC 2 cut(s) 8, 560
MmeI TCCRAC 2 cut(s) 249, 317
MnlI CCTC 6 cut(s) 4, 126, 291, 312, 414, 509
MseI TTAA 3 cut(s) 348, 405, 643
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 3 cut(s) 59, 202, 331
NlaIII CATG 2 cut(s) 193, 560
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 3 cut(s) 33, 126, 129
Ple19I CGATCG 1 cut(s) 62
PleI GAGTC 2 cut(s) 8, 560
PpsI GAGTC 2 cut(s) 8, 560
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 271
PvuI CGATCG 1 cut(s) 62
SaqAI TTAA 3 cut(s) 348, 405, 643
SatI GCNGC 3 cut(s) 32, 125, 128
Sau3AI GATC 3 cut(s) 59, 202, 331
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 8, 560
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 459, 621
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 159, 589
SsiI CCGC 2 cut(s) 124, 127
SspMI CTAG 2 cut(s) 152, 594
StyI CCWWGG 2 cut(s) 71, 184
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 4 cut(s) 17, 58, 62, 315
TasI AATT 2 cut(s) 159, 589
TauI GCSGC 2 cut(s) 127, 130
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 348, 405, 643
Tru9I TTAA 3 cut(s) 348, 405, 643
TscAI CASTG 3 cut(s) 142, 148, 397
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 206, 597
TspRI CASTG 3 cut(s) 142, 148, 397
Van91I CCANNNNNTGG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 374
XspI CTAG 2 cut(s) 152, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.