Rroxscaffold_1G00023600

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003166
Physical Location & Seq
Forward (+)
29120662 .. 29122810
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023600.1

Sequence Viewer

Length: 720 bp
ATGAAAATCAGTAAAACAGAGGTGAATTTGAGGAGGCTGCTTGCAGCTGCTCCTCATCAACAAAACCAGGCAAAACTTTCGCATTATGTTGCTACTTTACGAGAACAGGTAGAGCAGCTAGCTGAGGAGAGAACACCGGAAGGGTTACCTAGAGTTTCAAAGGCTGTTTTGAGTGACTATTCAGAGAAGATCGAAGCCATAGCTTTGAAATTAGCTGCTCCGTTGCCTAATTTGCAAGAAACCCAGGAGTCCCTGGCAAGAATTTCGGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATTTGTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCTTAGTGCAGATTCTTCGGCACCTGTCAAACTTGACGCCGCAGCTCAAGCACACATTGAAAAGCATAGGAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTTAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCAAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGACCTCCAAGACTTCGTGTTTCACATGGCTTTTGATGTTTCTAATGACATGTATATTCATCATGGTGGTACTTTTAATTCGTGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

239

Amino Acids

26.53

Weight (kDa)

7.82

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 5 - 239 1.8e-69 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AciI CCGC 1 cut(s) 414
AcsI RAATTY 2 cut(s) 25, 261
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 1 cut(s) 606
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 3 cut(s) 159, 208, 434
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 4 cut(s) 66, 243, 252, 316
AluBI AGCT 7 cut(s) 47, 118, 122, 203, 215, 419, 579
AluI AGCT 7 cut(s) 47, 118, 122, 203, 215, 419, 579
Alw26I GTCTC 5 cut(s) 288, 365, 439, 494, 512
ApeKI GCWGC 6 cut(s) 37, 44, 47, 115, 215, 416
ApoI RAATTY 2 cut(s) 25, 261
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 394
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 6 cut(s) 24, 34, 56, 127, 202, 428
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 6 cut(s) 60, 94, 246, 280, 372, 406
BciT130I CCWGG 4 cut(s) 68, 245, 254, 318
BcoDI GTCTC 5 cut(s) 288, 365, 439, 494, 512
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 3 cut(s) 119, 150, 504
BfmI CTRYAG 2 cut(s) 555, 567
BisI GCNGC 7 cut(s) 38, 45, 48, 116, 216, 414, 417
BlsI GCNGC 7 cut(s) 39, 46, 49, 117, 217, 415, 418
Bme1390I CCNGG 4 cut(s) 68, 245, 254, 318
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 4 cut(s) 68, 245, 254, 318
BmsI GCATC 1 cut(s) 620
BmtI GCTAGC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 243, 252
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 595
BseBI CCWGG 4 cut(s) 68, 245, 254, 318
BseDI CCNNGG 2 cut(s) 243, 252
BseGI GGATG 2 cut(s) 351, 611
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 114, 314
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 4 cut(s) 42, 46, 140, 575
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 6 cut(s) 24, 34, 56, 127, 202, 428
BsgI GTGCAG 2 cut(s) 402, 588
BshNI GGYRCC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 235, 291
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 5 cut(s) 288, 365, 439, 494, 512
BsmFI GGGAC 2 cut(s) 235, 291
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 115, 315
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 396
BspOI GCTAGC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 243, 252
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 411
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 4 cut(s) 68, 245, 254, 318
BstACI GRCGYC 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 42, 120, 586
BstDEI CTNAG 3 cut(s) 123, 323, 377
BstEII GGTNACC 1 cut(s) 144
BstF5I GGATG 2 cut(s) 351, 611
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 5 cut(s) 288, 365, 439, 494, 512
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 232, 422, 585
BstNI CCWGG 4 cut(s) 68, 245, 254, 318
BstNSI RCATGY 1 cut(s) 681
BstPI GGTNACC 1 cut(s) 144
BstSCI CCNGG 4 cut(s) 66, 243, 252, 316
BstSFI CTRYAG 2 cut(s) 555, 567
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 6 cut(s) 24, 34, 56, 127, 202, 428
BstV2I GAAGAC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 351, 611
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 534, 588, 600
Cac8I GCNNGC 3 cut(s) 42, 120, 586
CciI TCATGA 1 cut(s) 510
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 698
CviAII CATG 5 cut(s) 511, 596, 654, 678, 691
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 3 cut(s) 123, 323, 377
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 434
Eco91I GGTNACC 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 144
EcoRII CCWGG 4 cut(s) 66, 243, 252, 316
FaeI CATG 5 cut(s) 514, 599, 657, 681, 694
FaqI GGGAC 2 cut(s) 235, 291
FatI CATG 5 cut(s) 510, 595, 653, 677, 690
Fnu4HI GCNGC 7 cut(s) 38, 45, 48, 116, 216, 414, 417
FokI GGATG 2 cut(s) 338, 598
Fsp4HI GCNGC 7 cut(s) 38, 45, 48, 116, 216, 414, 417
FspBI CTAG 3 cut(s) 119, 150, 504
GluI GCNGC 7 cut(s) 38, 45, 48, 116, 216, 414, 417
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 5 cut(s) 514, 599, 657, 681, 694
HinfI GANTC 5 cut(s) 248, 304, 373, 386, 551
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 5 cut(s) 184, 286, 303, 324, 616
Hpy188III TCNNGA 3 cut(s) 368, 452, 511
HpyAV CCTTC 1 cut(s) 134
HpyCH4V TGCA 5 cut(s) 44, 235, 383, 529, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 422, 585
HpyF3I CTNAG 3 cut(s) 123, 323, 377
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 5 cut(s) 514, 599, 657, 681, 694
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 3 cut(s) 55, 223, 576
Lsp1109I GCAGC 6 cut(s) 24, 34, 56, 127, 202, 428
LweI GCATC 1 cut(s) 620
MaeI CTAG 3 cut(s) 119, 150, 504
MaeIII GTNAC 3 cut(s) 144, 173, 712
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 5 cut(s) 199, 273, 339, 342, 381
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 5 cut(s) 25, 209, 229, 261, 705
MlyI GAGTC 4 cut(s) 257, 313, 367, 545
MnlI CCTC 9 cut(s) 13, 24, 27, 63, 118, 448, 553, 556, 643
MseI TTAA 4 cut(s) 270, 495, 704, 718
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 4 cut(s) 68, 245, 254, 318
MvaI CCWGG 4 cut(s) 68, 245, 254, 318
MwoI GCNNNNNNNGC 3 cut(s) 232, 422, 585
NdeII GATC 1 cut(s) 189
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 5 cut(s) 514, 599, 657, 681, 694
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 173, 712
NspI RCATGY 1 cut(s) 681
PagI TCATGA 1 cut(s) 510
PciI ACATGT 1 cut(s) 677
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 7 cut(s) 39, 46, 49, 117, 217, 415, 418
PleI GAGTC 4 cut(s) 256, 312, 367, 545
PpsI GAGTC 4 cut(s) 256, 312, 367, 545
PscI ACATGT 1 cut(s) 677
Psp6I CCWGG 4 cut(s) 66, 243, 252, 316
PspEI GGTNACC 1 cut(s) 144
PspGI CCWGG 4 cut(s) 66, 243, 252, 316
PspN4I GGNNCC 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 4 cut(s) 270, 495, 704, 718
SatI GCNGC 7 cut(s) 38, 45, 48, 116, 216, 414, 417
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 4 cut(s) 257, 313, 367, 545
ScrFI CCNGG 4 cut(s) 68, 245, 254, 318
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 2 cut(s) 555, 567
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 5 cut(s) 25, 209, 229, 261, 705
SsiI CCGC 1 cut(s) 414
SspMI CTAG 3 cut(s) 119, 150, 504
StyD4I CCNGG 4 cut(s) 66, 243, 252, 316
TaqI TCGA 1 cut(s) 192
TasI AATT 5 cut(s) 25, 209, 229, 261, 705
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 270, 495, 704, 718
Tru9I TTAA 4 cut(s) 270, 495, 704, 718
TscAI CASTG 3 cut(s) 541, 595, 607
TseFI GTSAC 2 cut(s) 173, 712
TseI GCWGC 6 cut(s) 37, 44, 47, 115, 215, 416
Tsp45I GTSAC 2 cut(s) 173, 712
TspDTI ATGAA 3 cut(s) 17, 483, 676
TspGWI ACGGA 2 cut(s) 210, 514
TspRI CASTG 3 cut(s) 541, 595, 607
XapI RAATTY 2 cut(s) 25, 261
XceI RCATGY 1 cut(s) 681
XspI CTAG 3 cut(s) 119, 150, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.