Rroxscaffold_7G00199120

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003166
Physical Location & Seq
Reverse (-)
45048994 .. 45051655
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199120.1

Sequence Viewer

Length: 720 bp
ATGAAAATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTTCTCCTCAGCAACAAAACCAGGCAAAACTTTCGCATTATGTTGCTACTTTACGAGAACAGGTAGAACAGCTAGCTGAAGAGAGAACGCCTGAAGGCTTACCTACAGTTTCAAAGGCTGTCTTAAGTGACTATTCAGAGAAGATCGAAGCCATTGCTTCGAAATTAGCTGCTCCGTTGCCTGATTTGCAGGAACCACAGGAGTCCCTTGCAAGAATTTCGGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATCTGTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCCTAGTGCAGATTCTTTGTCACCTGTCAAACTTGATGCTGCAGCTCAAGCGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTCAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCTAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGAGCTCCAAGACTTCATGTTTCACATGGCTTTTGATGTTTCTAATGACATGTATATTCATCATGGTGGTACTTTTAATTCGTGTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

239

Amino Acids

26.41

Weight (kDa)

6.61

Isoelectric Point (pI)

69.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 5 - 239 8.7e-70 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 3 cut(s) 144, 159, 434
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 1 cut(s) 606
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 2 cut(s) 159, 434
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 2 cut(s) 66, 316
AluBI AGCT 7 cut(s) 47, 118, 122, 215, 419, 579, 633
AluI AGCT 7 cut(s) 47, 118, 122, 215, 419, 579, 633
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 4 cut(s) 288, 365, 494, 512
ApeKI GCWGC 5 cut(s) 37, 44, 215, 413, 416
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 34, 387
AsuII TTCGAA 1 cut(s) 206
AsuNHI GCTAGC 2 cut(s) 118, 584
BaeGI GKGCMC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 635
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 273, 451
Bbv12I GWGCWC 1 cut(s) 635
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 5 cut(s) 24, 56, 202, 400, 428
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 6 cut(s) 60, 94, 182, 216, 246, 280
BciT130I CCWGG 2 cut(s) 68, 318
BcoDI GTCTC 4 cut(s) 288, 365, 494, 512
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 4 cut(s) 119, 378, 504, 585
BfmI CTRYAG 4 cut(s) 150, 414, 555, 567
BfrI CTTAAG 1 cut(s) 169
BglII AGATCT 1 cut(s) 332
BisI GCNGC 5 cut(s) 38, 45, 216, 414, 417
BlsI GCNGC 5 cut(s) 39, 46, 217, 415, 418
Bme1390I CCNGG 2 cut(s) 68, 318
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 68, 318
BmsI GCATC 2 cut(s) 400, 620
BmtI GCTAGC 2 cut(s) 122, 588
BpiI GAAGAC 2 cut(s) 273, 451
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 49, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 68, 318
BseGI GGATG 2 cut(s) 351, 611
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 68, 314
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 42, 46, 575
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 5 cut(s) 24, 56, 202, 400, 428
BsgI GTGCAG 2 cut(s) 402, 588
BsiHKAI GWGCWC 1 cut(s) 635
BslFI GGGAC 2 cut(s) 235, 291
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 4 cut(s) 288, 365, 494, 512
BsmFI GGGAC 2 cut(s) 235, 291
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 342, 635
Bsp143I GATC 2 cut(s) 189, 332
BspCNI CTCAG 2 cut(s) 67, 315
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 2 cut(s) 122, 588
BspT104I TTCGAA 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 595
BssMI GATC 2 cut(s) 189, 332
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 68, 318
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 42, 120, 586
BstDEI CTNAG 3 cut(s) 54, 323, 717
BstF5I GGATG 2 cut(s) 351, 611
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 2 cut(s) 192, 335
BstMAI GTCTC 4 cut(s) 288, 365, 494, 512
BstMBI GATC 2 cut(s) 189, 332
BstMWI GCNNNNNNNGC 3 cut(s) 232, 422, 585
BstNI CCWGG 2 cut(s) 68, 318
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 2 cut(s) 66, 316
BstSFI CTRYAG 4 cut(s) 150, 414, 555, 567
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 5 cut(s) 24, 56, 202, 400, 428
BstV2I GAAGAC 2 cut(s) 273, 451
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtsCI GGATG 2 cut(s) 351, 611
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 534, 588, 600
Cac8I GCNNGC 3 cut(s) 42, 120, 586
CciI TCATGA 1 cut(s) 510
CfoI GCGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 698
CviAII CATG 6 cut(s) 511, 596, 645, 654, 678, 691
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 3 cut(s) 54, 323, 717
DpnI GATC 2 cut(s) 191, 334
DpnII GATC 2 cut(s) 189, 332
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 3 cut(s) 144, 159, 434
EcoICRI GAGCTC 1 cut(s) 633
EcoRII CCWGG 2 cut(s) 66, 316
EcoT38I GRGCYC 1 cut(s) 635
FaeI CATG 6 cut(s) 514, 599, 648, 657, 681, 694
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 235, 291
FatI CATG 6 cut(s) 510, 595, 644, 653, 677, 690
Fnu4HI GCNGC 5 cut(s) 38, 45, 216, 414, 417
FokI GGATG 2 cut(s) 338, 598
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 5 cut(s) 38, 45, 216, 414, 417
FspBI CTAG 4 cut(s) 119, 378, 504, 585
GlaI GCGC 1 cut(s) 426
GluI GCNGC 5 cut(s) 38, 45, 216, 414, 417
GsuI CTGGAG 1 cut(s) 300
HhaI GCGC 1 cut(s) 427
Hin1II CATG 6 cut(s) 514, 599, 648, 657, 681, 694
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 5 cut(s) 248, 304, 373, 386, 551
HphI GGTGA 2 cut(s) 34, 387
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 5 cut(s) 184, 286, 303, 324, 616
Hpy188III TCNNGA 3 cut(s) 368, 452, 511
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 7 cut(s) 44, 235, 257, 383, 416, 529, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 422, 585
HpyF3I CTNAG 3 cut(s) 54, 323, 717
Hsp92II CATG 6 cut(s) 514, 599, 648, 657, 681, 694
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 2 cut(s) 189, 332
LmnI GCTCC 3 cut(s) 223, 576, 638
Lsp1109I GCAGC 5 cut(s) 24, 56, 202, 400, 428
LweI GCATC 2 cut(s) 400, 620
MaeI CTAG 4 cut(s) 119, 378, 504, 585
MaeIII GTNAC 3 cut(s) 173, 393, 712
MalI GATC 2 cut(s) 191, 334
MboI GATC 2 cut(s) 189, 332
MboII GAAGA 6 cut(s) 137, 199, 273, 339, 342, 456
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 342, 635
MluCI AATT 3 cut(s) 209, 261, 705
MlyI GAGTC 4 cut(s) 257, 313, 367, 545
MnlI CCTC 7 cut(s) 13, 24, 27, 63, 448, 553, 556
MseI TTAA 3 cut(s) 170, 270, 704
MslI CAYNNNNRTG 1 cut(s) 692
MspCI CTTAAG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 68, 318
MvaI CCWGG 2 cut(s) 68, 318
MwoI GCNNNNNNNGC 3 cut(s) 232, 422, 585
NdeII GATC 2 cut(s) 189, 332
NheI GCTAGC 2 cut(s) 118, 584
NlaIII CATG 6 cut(s) 514, 599, 648, 657, 681, 694
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 3 cut(s) 173, 393, 712
NspI RCATGY 1 cut(s) 681
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 510
PciI ACATGT 1 cut(s) 677
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 39, 46, 217, 415, 418
PleI GAGTC 4 cut(s) 256, 312, 367, 545
PpsI GAGTC 4 cut(s) 256, 312, 367, 545
PscI ACATGT 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 66, 316
PspGI CCWGG 2 cut(s) 66, 316
PspN4I GGNNCC 1 cut(s) 240
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 692
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 3 cut(s) 170, 270, 704
SatI GCNGC 5 cut(s) 38, 45, 216, 414, 417
Sau3AI GATC 2 cut(s) 189, 332
SchI GAGTC 4 cut(s) 257, 313, 367, 545
ScrFI CCNGG 2 cut(s) 68, 318
SduI GDGCHC 2 cut(s) 342, 635
SfaNI GCATC 2 cut(s) 400, 620
SfcI CTRYAG 4 cut(s) 150, 414, 555, 567
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 3 cut(s) 28, 169, 420
SmoI CTYRAG 3 cut(s) 28, 169, 420
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 3 cut(s) 209, 261, 705
SspMI CTAG 4 cut(s) 119, 378, 504, 585
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 66, 316
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 192, 206
TasI AATT 3 cut(s) 209, 261, 705
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 170, 270, 704
Tru9I TTAA 3 cut(s) 170, 270, 704
TscAI CASTG 3 cut(s) 541, 595, 607
TseFI GTSAC 3 cut(s) 173, 393, 712
TseI GCWGC 5 cut(s) 37, 44, 215, 413, 416
Tsp45I GTSAC 3 cut(s) 173, 393, 712
TspDTI ATGAA 4 cut(s) 17, 483, 633, 676
TspGWI ACGGA 2 cut(s) 210, 514
TspRI CASTG 3 cut(s) 541, 595, 607
Vha464I CTTAAG 1 cut(s) 169
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 681
XspI CTAG 4 cut(s) 119, 378, 504, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.