Rh6AG164700

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003166
Physical Location & Seq
Forward (+)
26314459 .. 26320260
5802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG164700.1

Sequence Viewer

Length: 720 bp
ATGAAAATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCCCCTCAGCAACAAAACCAGGCAAAACTTTCACATTATGTTGCTACTTTACGAGAACAGGTAGAACAGCTAGCTGAAGAGAGAACACCGGAAGGCTTACCTAGAGTTTCAAAGGCTGTCTTAAGTGACTATTCAGAGAAGATCGAAGCCATTGCTTCGAAATTAGCTGTTCCATTGCCTGATTTGCAAGAACCACAGGAGTCCCTTCCAAGAATTTCAGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATTTCTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCCTAGTGCAGATTCTTTGTCACCTGTCAAACTTGACGCTGCAGCTCAAGCGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTCAAAGAGACCAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCTAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGACCTCCAAGACTTCATGTTTCACATGGCTTTTGATGTTTCTAATGACGTGTATATTCATTATGGTGGTACTTTTAATTCGTGTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

239

Amino Acids

26.59

Weight (kDa)

7.03

Isoelectric Point (pI)

66.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 5 - 239 1.2e-68 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 144, 434
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 1 cut(s) 606
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 2 cut(s) 159, 434
AjiI CACGTC 1 cut(s) 678
AjnI CCWGG 2 cut(s) 66, 316
AluBI AGCT 6 cut(s) 47, 118, 122, 215, 419, 579
AluI AGCT 6 cut(s) 47, 118, 122, 215, 419, 579
Alw26I GTCTC 4 cut(s) 288, 365, 494, 512
ApeKI GCWGC 5 cut(s) 37, 44, 47, 413, 416
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 34, 387
AsuII TTCGAA 1 cut(s) 206
AsuNHI GCTAGC 2 cut(s) 118, 584
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 273, 451
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 5 cut(s) 24, 34, 56, 400, 428
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 2 cut(s) 68, 318
BcoDI GTCTC 4 cut(s) 288, 365, 494, 512
BfaI CTAG 4 cut(s) 119, 150, 378, 585
BfmI CTRYAG 3 cut(s) 414, 555, 567
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 5 cut(s) 38, 45, 48, 414, 417
BlsI GCNGC 5 cut(s) 39, 46, 49, 415, 418
Bme1390I CCNGG 2 cut(s) 68, 318
BmgBI CACGTC 1 cut(s) 678
BmrFI CCNGG 2 cut(s) 68, 318
BmsI GCATC 1 cut(s) 620
BmtI GCTAGC 2 cut(s) 122, 588
BpiI GAAGAC 2 cut(s) 273, 451
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 49, 405
BsaI GGTCTC 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse1I ACTGG 2 cut(s) 504, 595
Bse3DI GCAATG 2 cut(s) 198, 221
BseBI CCWGG 2 cut(s) 68, 318
BseGI GGATG 2 cut(s) 351, 611
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMI GCAATG 2 cut(s) 198, 221
BseMII CTCAG 2 cut(s) 68, 314
BseNI ACTGG 2 cut(s) 504, 595
BseRI GAGGAG 2 cut(s) 46, 575
BseXI GCAGC 5 cut(s) 24, 34, 56, 400, 428
BsgI GTGCAG 2 cut(s) 402, 588
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 235, 291
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 4 cut(s) 288, 365, 494, 512
BsmFI GGGAC 2 cut(s) 235, 291
Bso31I GGTCTC 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 67, 315
BspHI TCATGA 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 2 cut(s) 122, 588
BspT104I TTCGAA 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 2 cut(s) 198, 221
BsrI ACTGG 2 cut(s) 504, 595
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 68, 318
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 42, 120, 586
BstDEI CTNAG 3 cut(s) 54, 323, 717
BstF5I GGATG 2 cut(s) 351, 611
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 4 cut(s) 288, 365, 494, 512
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 232, 422, 585
BstNI CCWGG 2 cut(s) 68, 318
BstSCI CCNGG 2 cut(s) 66, 316
BstSFI CTRYAG 3 cut(s) 414, 555, 567
BstV1I GCAGC 5 cut(s) 24, 34, 56, 400, 428
BstV2I GAAGAC 2 cut(s) 273, 451
BtrI CACGTC 1 cut(s) 678
BtsCI GGATG 2 cut(s) 351, 611
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 534, 588, 600
Cac8I GCNNGC 3 cut(s) 42, 120, 586
CciI TCATGA 1 cut(s) 510
CfoI GCGC 1 cut(s) 427
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 698
CviAII CATG 4 cut(s) 511, 596, 645, 654
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 3 cut(s) 54, 323, 717
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 144, 434
EcoRII CCWGG 2 cut(s) 66, 316
FaeI CATG 4 cut(s) 514, 599, 648, 657
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 235, 291
FatI CATG 4 cut(s) 510, 595, 644, 653
Fnu4HI GCNGC 5 cut(s) 38, 45, 48, 414, 417
FokI GGATG 2 cut(s) 338, 598
Fsp4HI GCNGC 5 cut(s) 38, 45, 48, 414, 417
FspBI CTAG 4 cut(s) 119, 150, 378, 585
GlaI GCGC 1 cut(s) 426
GluI GCNGC 5 cut(s) 38, 45, 48, 414, 417
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 427
Hin1II CATG 4 cut(s) 514, 599, 648, 657
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 5 cut(s) 248, 304, 373, 386, 551
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 34, 387
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 5 cut(s) 184, 286, 303, 324, 616
Hpy188III TCNNGA 3 cut(s) 368, 452, 511
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 134, 263
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 44, 235, 383, 416, 529, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 422, 585
HpyF3I CTNAG 3 cut(s) 54, 323, 717
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 4 cut(s) 514, 599, 648, 657
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 576
Lsp1109I GCAGC 5 cut(s) 24, 34, 56, 400, 428
LweI GCATC 1 cut(s) 620
MaeI CTAG 4 cut(s) 119, 150, 378, 585
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 3 cut(s) 173, 393, 712
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 6 cut(s) 137, 199, 273, 339, 342, 456
MluCI AATT 3 cut(s) 209, 261, 705
MlyI GAGTC 4 cut(s) 257, 313, 367, 545
MnlI CCTC 8 cut(s) 13, 24, 27, 63, 448, 553, 556, 643
MseI TTAA 3 cut(s) 170, 270, 704
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 68, 318
MvaI CCWGG 2 cut(s) 68, 318
MwoI GCNNNNNNNGC 3 cut(s) 232, 422, 585
NdeII GATC 1 cut(s) 189
NheI GCTAGC 2 cut(s) 118, 584
NlaIII CATG 4 cut(s) 514, 599, 648, 657
NmuCI GTSAC 3 cut(s) 173, 393, 712
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 510
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 39, 46, 49, 415, 418
PleI GAGTC 4 cut(s) 256, 312, 367, 545
PpsI GAGTC 4 cut(s) 256, 312, 367, 545
Psp6I CCWGG 2 cut(s) 66, 316
PspGI CCWGG 2 cut(s) 66, 316
PstI CTGCAG 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 3 cut(s) 170, 270, 704
SatI GCNGC 5 cut(s) 38, 45, 48, 414, 417
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 4 cut(s) 257, 313, 367, 545
ScrFI CCNGG 2 cut(s) 68, 318
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 3 cut(s) 414, 555, 567
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 3 cut(s) 28, 169, 420
SmoI CTYRAG 3 cut(s) 28, 169, 420
Sse9I AATT 3 cut(s) 209, 261, 705
SspMI CTAG 4 cut(s) 119, 150, 378, 585
StyD4I CCNGG 2 cut(s) 66, 316
TaiI ACGT 1 cut(s) 680
TaqI TCGA 2 cut(s) 192, 206
TasI AATT 3 cut(s) 209, 261, 705
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 170, 270, 704
Tru9I TTAA 3 cut(s) 170, 270, 704
TscAI CASTG 3 cut(s) 541, 595, 607
TseFI GTSAC 3 cut(s) 173, 393, 712
TseI GCWGC 5 cut(s) 37, 44, 47, 413, 416
Tsp45I GTSAC 3 cut(s) 173, 393, 712
TspDTI ATGAA 4 cut(s) 17, 483, 633, 676
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 3 cut(s) 541, 595, 607
Vha464I CTTAAG 1 cut(s) 169
XapI RAATTY 1 cut(s) 261
XspI CTAG 4 cut(s) 119, 150, 378, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.