Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Reverse (-)

11716405 .. 11718043

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTGACGAGAAGCACCACCACGGCCTCTTCCACCACCACAAGGACAAGGACGACAATCCGTTAGAAACCTCCTCCTACGAATCTAAGACCTCTTACGGAGGCAGCGGCTACAGCAAAACCACTGGTTATTCCGCGGAGGGAGACGGTGGCAGGTACGGGAGTGAGACCACCGACGCGTATGGCTCTGCTGCTCCCGGCGGTGGCCGATACACCAGCGAGACTGCTGGTTACGTCAAGCAGGGACACGGTGGCAAGTACAGCGAGACCTCCACTGAAACTTATGGCACCACCGAGTCTGGAATCGATTACAAGAAGGAGGAGAAGCACCACAAGCATCTCGAAGAATTTGGGGAGATGGGTGCCGTTGCTGCAGGAGCCTATGCTTTGCATGAGAAGCATAAGGCGAAGAATGACCCAGAGCATGCACACAAGCACAAGGTAGAAGAGGAGATCGCTGCAGTTGCTGCAGTTGGATCTGGTGGGTTCGCCTTCCACGAGCACCATGATAAGAAAGAGGCCAAGGAAGAAGAAAAAGAGGCTCATGGCCTTGAAAAGAAGCACCATCATCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

6.03

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA_WDS	PF02496	103 - 180	1.6e-36	ABA/WDS induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	2 cut(s)	287, 362
AccII	CGCG	2 cut(s)	137, 179
AciI	CCGC	4 cut(s)	108, 135, 137, 201
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	2 cut(s)	158, 260
AfiI	CCNNNNNNNGG	2 cut(s)	43, 203
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	554
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	4 cut(s)	138, 161, 215, 260
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	4 cut(s)	25, 205, 519, 547
ApeKI	GCWGC	5 cut(s)	105, 191, 371, 458, 467
ApoI	RAATTY	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BanI	GGYRCC	2 cut(s)	287, 362
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	5 cut(s)	117, 178, 358, 445, 454
BccI	CCATC	2 cut(s)	352, 573
BceAI	ACGGC	2 cut(s)	40, 350
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	4 cut(s)	138, 161, 215, 260
BfmI	CTRYAG	4 cut(s)	112, 372, 459, 468
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	6 cut(s)	106, 109, 192, 372, 459, 468
BlsI	GCNGC	6 cut(s)	107, 110, 193, 373, 460, 469
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	3 cut(s)	289, 364, 379
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	306
BsaI	GGTCTC	2 cut(s)	161, 260
BsaJI	CCNNGG	3 cut(s)	22, 135, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 203
Bse1I	ACTGG	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	22, 135, 522
BseLI	CCNNNNNNNGG	2 cut(s)	43, 203
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	3 cut(s)	64, 335, 464
BseXI	GCAGC	5 cut(s)	117, 178, 358, 445, 454
Bsh1236I	CGCG	2 cut(s)	137, 179
BshFI	GGCC	4 cut(s)	27, 207, 521, 549
BshNI	GGYRCC	2 cut(s)	287, 362
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	43, 203
BsmAI	GTCTC	4 cut(s)	138, 161, 215, 260
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	4 cut(s)	27, 207, 521, 549
Bso31I	GGTCTC	2 cut(s)	161, 260
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	453, 476
BspACI	CCGC	4 cut(s)	108, 135, 137, 201
BspANI	GGCC	4 cut(s)	27, 207, 521, 549
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	137, 179
BspLI	GGNNCC	3 cut(s)	289, 364, 379
BspMAI	CTGCAG	3 cut(s)	376, 463, 472
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	484
BspT107I	GGYRCC	2 cut(s)	287, 362
BspTNI	GGTCTC	2 cut(s)	161, 260
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	22, 135, 522
BssMI	GATC	2 cut(s)	453, 476
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	149, 251
Bst6I	CTCTTC	2 cut(s)	35, 441
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	2 cut(s)	22, 135
BstFNI	CGCG	2 cut(s)	137, 179
BstKTI	GATC	2 cut(s)	456, 479
BstMAI	GTCTC	4 cut(s)	138, 161, 215, 260
BstMBI	GATC	2 cut(s)	453, 476
BstMWI	GCNNNNNNNGC	8 cut(s)	114, 261, 334, 371, 377, 397, 464, 467
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	4 cut(s)	112, 372, 459, 468
BstUI	CGCG	2 cut(s)	137, 179
BstV1I	GCAGC	5 cut(s)	117, 178, 358, 445, 454
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	4 cut(s)	27, 207, 521, 549
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	2 cut(s)	22, 135
BtsIMutI	CAGTG	2 cut(s)	123, 273
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr42I	CCGCGG	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	157, 259
CviAII	CATG	4 cut(s)	392, 425, 506, 545
CviJI	RGCY	8 cut(s)	27, 111, 186, 207, 380, 521, 542, 549
CviKI_1	RGCY	8 cut(s)	27, 111, 186, 207, 380, 521, 542, 549
CviQI	GTAC	2 cut(s)	157, 259
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	455, 478
DpnII	GATC	2 cut(s)	453, 476
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	35, 441
EarI	CTCTTC	2 cut(s)	35, 441
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	2 cut(s)	161, 260
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	4 cut(s)	395, 428, 509, 548
FaiI	YATR	8 cut(s)	183, 285, 384, 393, 402, 426, 507, 546
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	391, 424, 505, 544
Fnu4HI	GCNGC	6 cut(s)	106, 109, 192, 372, 459, 468
Fsp4HI	GCNGC	6 cut(s)	106, 109, 192, 372, 459, 468
GluI	GCNGC	6 cut(s)	106, 109, 192, 372, 459, 468
HaeIII	GGCC	4 cut(s)	27, 207, 521, 549
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	395, 428, 509, 548
HinfI	GANTC	3 cut(s)	83, 296, 303
HpaII	CCGG	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	300, 341
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	310, 502
HpyCH4III	ACNGT	2 cut(s)	149, 251
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	5 cut(s)	374, 391, 428, 461, 470
HpyF10VI	GCNNNNNNNGC	8 cut(s)	114, 261, 334, 371, 377, 397, 464, 467
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	395, 428, 509, 548
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	453, 476
LmnI	GCTCC	2 cut(s)	199, 377
Lsp1109I	GCAGC	5 cut(s)	117, 178, 358, 445, 454
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	455, 478
MboI	GATC	2 cut(s)	453, 476
MboII	GAAGA	7 cut(s)	22, 356, 421, 458, 539, 542, 565
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	1 cut(s)	347
MluI	ACGCGT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	454
MspA1I	CMGCKG	2 cut(s)	108, 137
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	137, 179
MwoI	GCNNNNNNNGC	8 cut(s)	114, 261, 334, 371, 377, 397, 464, 467
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	453, 476
NlaIII	CATG	4 cut(s)	395, 428, 509, 548
NlaIV	GGNNCC	3 cut(s)	289, 364, 379
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	83, 303
PkrI	GCNGC	6 cut(s)	107, 110, 193, 373, 460, 469
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	289, 364, 379
PstI	CTGCAG	3 cut(s)	376, 463, 472
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	158, 260
RsaNI	GTAC	2 cut(s)	157, 259
SacII	CCGCGG	1 cut(s)	138
SatI	GCNGC	6 cut(s)	106, 109, 192, 372, 459, 468
Sau3AI	GATC	2 cut(s)	453, 476
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	6 cut(s)	74, 95, 158, 237, 272, 444
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	4 cut(s)	112, 372, 459, 468
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	108, 135, 137, 201
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	149, 251
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	306, 342
TasI	AATT	1 cut(s)	347
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	83, 303
TscAI	CASTG	2 cut(s)	130, 280
TseI	GCWGC	5 cut(s)	105, 191, 371, 458, 467
TspGWI	ACGGA	2 cut(s)	51, 114
TspRI	CASTG	2 cut(s)	130, 280
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.