pycom10g01920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004221
Physical Location & Seq
Forward (+)
2021574 .. 2022188
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01920.2

Sequence Viewer

Length: 561 bp
ATGAATAAGAAGACGAAAAAACCTCATCTTACTCTCAGTCTCAGTCTGGTTACAGTGCCCGGTCTGGTGGTGGCTACGGCGACTCCACTACTGGTTACTCTTCCCAAGCACGTACCGGGCCGTAGCGCCAGCGGCTACCGCGACAGCACTGATTACTCTGGTGAAGGACGCCTTACTGGTGGAGGCAGCTATGGAGAATGCAAAACTGATGATTACTCGGAAGAAGGACACGGAGCTGCGTACAACGAGACCACTGTTTACTCTAACAAAGGACGTCGTACTGGTGGAGGTGGCTACGGCGGGGCCAGCAACGCTGATAGTTACTCGGAAGAAGGACACGGAGGTCGTGCTACCGAGACCACTGATTACTCTGGTAAAGGACGTCGTACTAGCGGCGGAGGTGGCTATGGTGGGGAAAGCACTGATGATTACTCGGAGGAAGGACACGGAGGGCGTCGCGGGTACATAAAATATGATGATGATGACTCGGAAGAAGGATACGGAGGGCGTGACAGAGGAGGGTACAGCAACAGAAGTGAAATGAGAAATTTTTTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.64

Weight (kDa)

5.75

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 342
AatII GACGTC 2 cut(s) 277, 385
AccII CGCG 2 cut(s) 141, 459
AciI CCGC 6 cut(s) 132, 139, 300, 393, 396, 459
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 4 cut(s) 169, 274, 382, 454
AfaI GTAC 6 cut(s) 114, 242, 280, 388, 464, 524
AluBI AGCT 2 cut(s) 189, 236
AluI AGCT 2 cut(s) 189, 236
Alw26I GTCTC 3 cut(s) 44, 242, 350
AoxI GGCC 2 cut(s) 118, 303
ApeKI GCWGC 2 cut(s) 186, 236
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 118, 303
AsuC2I CCSGG 2 cut(s) 60, 117
AsuHPI GGTGA 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 198, 223
BceAI ACGGC 3 cut(s) 93, 105, 313
BciVI GTATCC 1 cut(s) 491
BcnI CCSGG 2 cut(s) 60, 117
BcoDI GTCTC 3 cut(s) 44, 242, 350
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 491
BisI GCNGC 4 cut(s) 133, 187, 237, 394
BlsI GCNGC 4 cut(s) 134, 188, 238, 395
Bme1390I CCNGG 2 cut(s) 60, 117
BmgT120I GGNCC 2 cut(s) 118, 303
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 60, 117
BpiI GAAGAC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 60, 117
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 4 cut(s) 169, 274, 382, 454
BsaI GGTCTC 2 cut(s) 242, 350
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bse1I ACTGG 3 cut(s) 96, 181, 286
BseMII CTCAG 2 cut(s) 49, 55
BseNI ACTGG 3 cut(s) 96, 181, 286
BseRI GAGGAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 198, 223
Bsh1236I CGCG 2 cut(s) 141, 459
BshFI GGCC 2 cut(s) 120, 305
BsiSI CCGG 2 cut(s) 60, 116
BsmAI GTCTC 3 cut(s) 44, 242, 350
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 2 cut(s) 120, 305
Bso31I GGTCTC 2 cut(s) 242, 350
Bsp1286I GDGCHC 1 cut(s) 60
BspACI CCGC 6 cut(s) 132, 139, 300, 393, 396, 459
BspANI GGCC 2 cut(s) 120, 305
BspCNI CTCAG 2 cut(s) 48, 54
BspFNI CGCG 2 cut(s) 141, 459
BspLI GGNNCC 1 cut(s) 304
BspTNI GGTCTC 2 cut(s) 242, 350
BsrI ACTGG 3 cut(s) 96, 181, 286
BssNI GRCGYC 4 cut(s) 169, 274, 382, 454
Bst4CI ACNGT 2 cut(s) 55, 256
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 4 cut(s) 169, 274, 382, 454
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 130, 307
BstDEI CTNAG 2 cut(s) 35, 41
BstFNI CGCG 2 cut(s) 141, 459
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 3 cut(s) 44, 242, 350
BstMWI GCNNNNNNNGC 5 cut(s) 132, 138, 306, 311, 402
BstSCI CCNGG 2 cut(s) 58, 115
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 2 cut(s) 141, 459
BstV1I GCAGC 2 cut(s) 198, 223
BstV2I GAAGAC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 2 cut(s) 120, 305
BtsIMutI CAGTG 5 cut(s) 60, 147, 252, 360, 420
Cac8I GCNNGC 2 cut(s) 130, 307
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 118, 303
CseI GACGC 2 cut(s) 177, 443
Csp6I GTAC 6 cut(s) 113, 241, 279, 387, 463, 523
CviJI RGCY 8 cut(s) 74, 120, 135, 189, 236, 294, 305, 405
CviKI_1 RGCY 8 cut(s) 74, 120, 135, 189, 236, 294, 305, 405
CviQI GTAC 6 cut(s) 113, 241, 279, 387, 463, 523
DdeI CTNAG 2 cut(s) 35, 41
DrdI GACNNNNNNGTC 1 cut(s) 342
DseDI GACNNNNNNGTC 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 411
Eco31I GGTCTC 2 cut(s) 242, 350
FaiI YATR 4 cut(s) 192, 408, 467, 474
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FauI CCCGC 2 cut(s) 293, 452
Fnu4HI GCNGC 4 cut(s) 133, 187, 237, 394
Fsp4HI GCNGC 4 cut(s) 133, 187, 237, 394
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 133, 187, 237, 394
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 120, 305
HapII CCGG 2 cut(s) 60, 116
HgaI GACGC 2 cut(s) 177, 443
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 4 cut(s) 169, 274, 382, 454
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 82, 485
HpaII CCGG 2 cut(s) 60, 116
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 220, 328, 436, 490
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 279, 387, 459
HpyAV CCTTC 5 cut(s) 158, 218, 326, 434, 488
HpyCH4III ACNGT 2 cut(s) 55, 256
HpyCH4IV ACGT 3 cut(s) 111, 274, 382
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 138, 306, 311, 402
HpyF3I CTNAG 2 cut(s) 35, 41
HpySE526I ACGT 3 cut(s) 111, 274, 382
Hsp92I GRCGYC 4 cut(s) 169, 274, 382, 454
HspAI GCGC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 198, 223
MaeI CTAG 1 cut(s) 390
MaeII ACGT 3 cut(s) 111, 274, 382
MaeIII GTNAC 4 cut(s) 49, 94, 320, 509
MboII GAAGA 5 cut(s) 22, 92, 233, 341, 503
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 547
MlyI GAGTC 2 cut(s) 76, 479
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 60, 116
MspR9I CCNGG 2 cut(s) 60, 117
Mva1269I GAATGC 1 cut(s) 203
MvnI CGCG 2 cut(s) 141, 459
MwoI GCNNNNNNNGC 5 cut(s) 132, 138, 306, 311, 402
NciI CCSGG 2 cut(s) 60, 117
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 509
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 134, 188, 238, 395
PleI GAGTC 2 cut(s) 76, 479
PpsI GAGTC 2 cut(s) 76, 479
Ppu21I YACGTR 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 118, 303
RsaI GTAC 6 cut(s) 114, 242, 280, 388, 464, 524
RsaNI GTAC 6 cut(s) 113, 241, 279, 387, 463, 523
SatI GCNGC 4 cut(s) 133, 187, 237, 394
Sau96I GGNCC 2 cut(s) 118, 303
SchI GAGTC 2 cut(s) 76, 479
ScrFI CCNGG 2 cut(s) 60, 117
SduI GDGCHC 1 cut(s) 60
SetI ASST 9 cut(s) 25, 114, 191, 238, 277, 292, 346, 385, 403
Sse9I AATT 1 cut(s) 547
SsiI CCGC 6 cut(s) 132, 139, 300, 393, 396, 459
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 58, 115
TaaI ACNGT 2 cut(s) 55, 256
TaiI ACGT 3 cut(s) 114, 277, 385
TasI AATT 1 cut(s) 547
TauI GCSGC 2 cut(s) 135, 396
TscAI CASTG 5 cut(s) 60, 154, 259, 367, 427
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 186, 236
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 246, 354, 462, 516
TspRI CASTG 5 cut(s) 60, 154, 259, 367, 427
XapI RAATTY 1 cut(s) 547
XspI CTAG 1 cut(s) 390
ZraI GACGTC 2 cut(s) 275, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.