Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004221

Physical Location & Seq

Genomic Coordinates Reverse (-)

34771426 .. 34773889

Gene Structure 2464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCTGAGGAGAAGCACCACCACGGCCTCTTCCACCACCACAAGGACGACGAGGACAAACCCTTAGAAACCTCCGCCTACGAATCTCAGACCGCTTACGGAGGCGGCGGCTACAGCGAGACCACCGGTTATTCCGCTGAGGGAGAGGGTGGCAGGTACAACAGTGAGACCACCGACGCCTATGGCTCAGCTGCTCCCGGCGGTGGCCGATACACCAGCGAGACCACTGGTTACGTCAAGGAGGGACATGGTGGCAAGTACAGCGAGACCACCACCCAAGCTTATGGCACCACTGAATCTGGAATCGATTACAAGAAGGAGGAGAAGCACCATAAACATCTCGAGCAACTCGGCGAGCTCGGTGCAGCTGCTGCTGGAGCTTATGCTTTGCATGAGAAGCATAAGGAAAAGAAAGACCCAGAGCATGCCCACAAGCACAAGATAGAAGAGGAGATCGCTGCAGTGGCTGCAGTTGGATCCGGTGGGTTCGCCTTCCACGAGCACCATGAAAAGAAAGAGACCAAGGAAGAAGAGGAAGAGGCTCATGGAAAGAAGCACCACCATCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0008270 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0032991 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_WDS

Protein Analysis

190

Amino Acids

20.88

Weight (kDa)

5.78

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA_WDS	PF02496	103 - 180	4.7e-36	ABA/WDS induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004221)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13410
malus_domestica	MD05G1028100.v1.1 MD05G1028500.v1.1 MD10G1029000.v1.1 MD10G1029100.v1.1
prunus_persica	Prupe.6G160200_v2.0.a1 Prupe.8G034100_v2.0.a1 Prupe.8G034200_v2.0.a1
pyrus_communis	pycom05g02020 pycom05g02030 pycom10g01890 pycom10g01910 pycom10g01920
rosa_chinensis	RchiOBHm_Chr6g0274971 RchiOBHm_Chr6g0274981
rosa_laevigata	RLG00000013504 RLG00000013505
rosa_multiflora	Rmu_sc0000181.1_g000007 Rmu_sc0043110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193760 Rroxscaffold_7G00193770
rosa_rugosa	Rorug06G0086800 Rorug06G0086800
rosa_samantha	Rh6AG201600 Rh6AG201700 Rh6BG205100 Rh6BG205200 Rh6CG206600 Rh6CG206800 Rh6DG196800 Rh6DG196900
rosa_wichuraiana	Rw6G017530 Rw6G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
AclWI	GGATC	2 cut(s)	471, 484
AcoI	YGGCCR	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	158, 260
AfiI	CCNNNNNNNGG	2 cut(s)	43, 203
AgeI	ACCGGT	1 cut(s)	125
AluBI	AGCT	5 cut(s)	191, 281, 358, 368, 380
AluI	AGCT	5 cut(s)	191, 281, 358, 368, 380
Alw21I	GWGCWC	2 cut(s)	360, 504
Alw26I	GTCTC	5 cut(s)	113, 161, 215, 260, 512
AlwI	GGATC	2 cut(s)	471, 484
AlwNI	CAGNNNCTG	2 cut(s)	371, 467
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	25, 205
ApeKI	GCWGC	6 cut(s)	191, 365, 368, 371, 458, 467
AsiGI	ACCGGT	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	360, 504
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BccI	CCATC	1 cut(s)	570
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BfmI	CTRYAG	3 cut(s)	112, 459, 468
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	8 cut(s)	107, 110, 193, 367, 370, 373, 460, 469
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	289, 478
BmrFI	CCNGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsaJI	CCNNGG	2 cut(s)	22, 522
BsaWI	WCCGGW	2 cut(s)	125, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 203
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	22, 522
BseLI	CCNNNNNNNGG	2 cut(s)	43, 203
BseMII	CTCAG	3 cut(s)	101, 129, 201
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	3 cut(s)	23, 335, 464
BseXI	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	27, 207
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	360, 504
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	126, 198, 480
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	43, 203
BsmAI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	27, 207
Bso31I	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	360, 504
Bsp143I	GATC	2 cut(s)	453, 476
Bsp1720I	GCTNAGC	1 cut(s)	187
BspACI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
BspANI	GGCC	2 cut(s)	27, 207
BspCNI	CTCAG	3 cut(s)	100, 130, 200
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	289, 478
BspMAI	CTGCAG	2 cut(s)	463, 472
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	471, 484
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	22, 522
BssMI	GATC	2 cut(s)	453, 476
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	4 cut(s)	35, 441, 525, 531
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	371, 467
BstC8I	GCNNGC	2 cut(s)	356, 426
BstDEI	CTNAG	5 cut(s)	6, 64, 87, 138, 187
BstDSI	CCRYGG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	456, 479
BstMAI	GTCTC	5 cut(s)	113, 161, 215, 260, 512
BstMBI	GATC	2 cut(s)	453, 476
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	3 cut(s)	112, 459, 468
BstV1I	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	27, 207
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	4 cut(s)	169, 225, 291, 468
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	356, 426
CaiI	CAGNNNCTG	2 cut(s)	371, 467
Cfr10I	RCCGGY	1 cut(s)	125
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	157, 259
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	5 cut(s)	248, 392, 425, 506, 545
CviQI	GTAC	2 cut(s)	157, 259
DdeI	CTNAG	5 cut(s)	6, 64, 87, 138, 187
DpnI	GATC	2 cut(s)	455, 478
DpnII	GATC	2 cut(s)	453, 476
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	4 cut(s)	35, 441, 525, 531
EarI	CTCTTC	4 cut(s)	35, 441, 525, 531
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	5 cut(s)	113, 161, 215, 260, 512
Eco53kI	GAGCTC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	5 cut(s)	251, 395, 428, 509, 548
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	5 cut(s)	247, 391, 424, 505, 544
Fnu4HI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
GluI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	27, 207
HapII	CCGG	3 cut(s)	126, 198, 480
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	251, 395, 428, 509, 548
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	3 cut(s)	83, 296, 303
HpaII	CCGG	3 cut(s)	126, 198, 480
Hpy188I	TCNGA	2 cut(s)	7, 90
Hpy188III	TCNNGA	2 cut(s)	300, 341
Hpy99I	CGWCG	2 cut(s)	53, 179
HpyAV	CCTTC	2 cut(s)	310, 502
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	365, 391, 461, 470
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
HpyF3I	CTNAG	5 cut(s)	6, 64, 87, 138, 187
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	251, 395, 428, 509, 548
Kzo9I	GATC	2 cut(s)	453, 476
LmnI	GCTCC	2 cut(s)	199, 377
LpnPI	CCDG	9 cut(s)	139, 139, 211, 213, 229, 285, 360, 432, 493
Lsp1109I	GCAGC	6 cut(s)	178, 355, 358, 377, 445, 454
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	455, 478
MboI	GATC	2 cut(s)	453, 476
MboII	GAAGA	6 cut(s)	22, 458, 539, 542, 548, 559
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	360, 504
MmeI	TCCRAC	1 cut(s)	454
MspA1I	CMGCKG	3 cut(s)	137, 191, 368
MspI	CCGG	3 cut(s)	126, 198, 480
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	114, 261, 371, 377, 397, 464, 467
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	453, 476
NlaIII	CATG	5 cut(s)	251, 395, 428, 509, 548
NlaIV	GGNNCC	2 cut(s)	289, 478
NmeAIII	GCCGAG	1 cut(s)	330
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	83, 296, 303
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	8 cut(s)	107, 110, 193, 367, 370, 373, 460, 469
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	289, 478
PstI	CTGCAG	2 cut(s)	463, 472
PstNI	CAGNNNCTG	2 cut(s)	371, 467
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	2 cut(s)	191, 368
RsaI	GTAC	2 cut(s)	158, 260
RsaNI	GTAC	2 cut(s)	157, 259
SacI	GAGCTC	1 cut(s)	360
SatI	GCNGC	8 cut(s)	106, 109, 192, 366, 369, 372, 459, 468
Sau3AI	GATC	2 cut(s)	453, 476
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	360, 504
SetI	ASST	8 cut(s)	74, 158, 193, 237, 283, 360, 370, 382
SfcI	CTRYAG	3 cut(s)	112, 459, 468
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	6 cut(s)	75, 93, 105, 108, 135, 201
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	306, 342
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	108, 111
TfiI	GAWTC	3 cut(s)	83, 296, 303
TscAI	CASTG	4 cut(s)	169, 232, 298, 468
TseI	GCWGC	6 cut(s)	191, 365, 368, 371, 458, 467
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	169, 232, 298, 468
XceI	RCATGY	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.